These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10503#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1385 fasta sequence [CCTTTTTTTTCTTTTTGAAACCCAAATTAAATTTCCTTTCTTTTCGTTGTATAAACAATT-GGTTATGAA-ATCATAATACTTTGAGATCCCTCAAATTTCTTACAAACCTTTCTCCAACGGTCGACCCAACTCTCACAAACACAGCCGGGAAGCCAATCCGGGCCTCAACCTCGGCCTCAGACCCA-TGCGACATCCCCTC-TCCTACACCCCCTCTACTCGTACGACCACCGAACTCATCGCCGGTCCAAACGTGCTTCCATAAGCCGCCATCTGACATGGGAAAGTAGGCGGT-CACCGTGCTCCTCCCCTTGTCCAAGACCGGCACCACCAGCATCTCTGTCCCAACCAGGAAT-TGTTGGTATGTCATCT-TCTGCACACGCTGATCCTCCGGGTAGTGGAGGAAGAGGTGCCGCGCCACGGGAAGGCCCTTCTCCGCCGCCTCCTCGACGAGC-TGGATCCGGTAGAACTCCCAGGCTT-TGTAGATCTTTGCGCAGCGCGCGAAATGCGCGAGCGTGCGGTTATTGGAGTAGAACTGGCAGTTGGATCCTGGCTTGTTACCCTCGTGGGTGCGGAAGACGACGGTGAAGGCGCTGAGCTCCAGCCATCGGAGGAGGAGCTCCTCGCTGCGGCGGTAGCGGAGGAGCGGCAGGTCGACGGTGCAGTAGCCGCCGGCGTCGCCGTGGTTGAGCGGGAAGCCGGACATGCCGCCGGTGAGGAGGCCGACGACGCTGCTCTTGATGCCGTCGTTCGCCTGCCAGCTCACCATCTGGTCCCCTTCCCAGAACAGCATCGCCCACCTCAAGCTCTCCCTGAACCCCGCCCGCACGAAGAACACCAGCTCGCCGTCGCCGTCGCCGTCGTCGGCGTCGTCCGCGACGCGGCGGTGCTCGCCGGAGCGCCACTCGTCGGCGAACTCGCGGTTGACGCGCGCCCACAGCTCCGGGTACCGGTTGTGCGCCGCGACGGGGCCGTCGTCGCCGGAGCCGGAGGAGTGCAGCCGCGCGTTCAGCGGGAGGCCCTCGCCGAAGTCGGCCATCCAGCCGGCGGCGCCGCCGCGGGCCATCACGGCGAGGACCTCGCCCTTGAACCAGGCGCGCGCGGCCGGGTTGGTGAAGTCCAGCATGGCGACGTCGAACGCCGTGTTGGGCATCATGTACGGCTCGCCGGCGGCGTCCCGGACCAGGAGCCCCAGCTTCTTGGCCTCCTCGAACAGGTGCCTCCTCGCGTTCGCCTTCTTGTCCATCGGGACGAGGCATGGGTTGCAGTAGGTCATGGTCCTGACGCCGCGGCGCCGGAGATCGCGGACCAGATCATTCCATCCGGCGTAGTGGTCGTCGTCTACCTCCCAGTTCCACCATAGCTGGGATCCAATGGACGTCTTCCTC] [+] EMBL CB676026 [CCTTTTTTTTCTCTTTGAAACCCAAATTAAATTTCCTTTCCTTTCGTTGTATAAACAATT GGTTATGAA ATCATAATACTTTGAGATCCCTCAAATTTCTTACAAACCTTTCTCCAACGGTCGACCCAACTCTCACAAACACAGCCGGGAAGCCAATCCGGGCCTCAACCTCGGCCTCAGACCCA TGCGACATCCCCTC TCCTACACCCCCTCTACTCGTACGACCACCGAACTCATCGCCGGTCCAAACGTGCTTCCATAAGCCGCCATCTGACATGGGAAAGTAGGCGGT CACCGTGCTCCTCCCCTTGTCCAAGACCGGCACCACCAGCATCTCTGTCCCAACCAGGAAT TGTTGGTATGTCATCT TCTGCACACGCTGATCCTCCGGGTAGTGGAGGAAGAGGTGCCGCGCCACGGGAAGGCCCTTCTCCGCCGCCTCCTCGACGAGC TGGATCCGGTAGAACTCCCAGGCTT TGTAGATCTTTGCGCAGCGCGCGAAATGCGCGAGCGTGCGGTTATTGGAGTAGAACTGGCAGTTGGATCCTGGCTTGTTACCCTCGTGGGTGCGGAAGACGACGGTGAAGGCGCTGAGCTCCAGCCATCGGAGGAGGAGCTCCTCGCTGCGGCGGTAGCGGAGGAGCGGCAGGTCGACGGTGCAGTAGCCGCCGGCGTCGCCGTGGTTGAGCGGGAAGCCGGACATGCCGCCGGTGAGGAGGCCGACGACGCTGCTCTTGATGCCGTCGTTCGCCTGCCAGCTCACCATCTGGTCCCCTTCCCAGAACAGCATCGCCCACCTCAAGCTCT ] [-] EMBL BI812851 [ TTTTTTTTTGAAACCCAAATTAAATTTCCTTTCTTTTCG TGTATAAACAATG GGTTATGAA ATCATAATAC TTGAGATCCCTCAAATTTCTTACAAACCTTTCTCCAACGGTCGACCCAACTCTCACAAACACAGCCGGGAAGCCAATCCGGGCCTCAACCTCGGCCTCAGACCCA TGCGACATCCCCTC TCCTACACCCCCTCTACTCGTACGACCACCGAACTCATCGCCGGTCCAAACGTGCTTCCATAAGCCG CATCTGACATGGGAAAGTAGGCGGT CACCGTGCTCCTCCCCTTGTCCAAGACCGG ACCA CAG ATCTCTGTCCCAACCAGGAATGTGTTGGTATGTCATCT TCTGCACACGCTGATCCTCCGGGTAGTGGAGGAAGAGGTGCCGCGCCACGGGAAGG CCTTCTCCGCCGCCTCCTCGACGAGC TGGATCCGGTAGAACTCCCAGGC T TGTAGATCTTTGCG ] [-] EMBL BM420475 [ TTTTGAAA CCAAATTAAATTTCCTTTCTTTTCGTTGTATAAACAA T GGTTATGAAGATCATAATACTTTGAGATCCCTCAAATTTCTTACAAA CTTTCTCCAA GGTCGA CCAA TCTCACAAACACAG CGGGAAGCCAATCCGGGCCTCAA CTCGG CTCAGACCCAGTG GA ATCCCCTC TCCTACACCCCCTCTACTCGTACGACCACCGAACTCATCGCCGGTCCAAACGTGCTTCCATAAGCCGCCATCTGACATGGGAAAGTAGGCGGTACACCGTGCTCCTCCCCTTGTCCAAGACCGGCA CACCAGCATCTCTGTCCCAA CAGGAAT TGTTGGTATGTCATCT TCTGCACACGCTGATCCTCCGGGTAGTGGAGGAAGAGGTGCCG GCCACGGGAAGGCCCTTCTCCG CG CTCCTCGACGAGCTTGGATCCGGTAGAACTCCCAGGCTTGTGTAGATCTTTGCGCAGCGCGCGAAATGCGCGAGCGTGCGG TATT ] [+] EMBL CB646924 [ ATAAACAATTCGGTTATGAA ATCATAATACTTTGAGATCCCTCAAATTTCTTACAAACCTTTCTCCAACGGTCGACCCAACTCTCACAAACACAGCCGGGAAGCCAATCCGGGCCTCAACCTCGGCCTCAGACCCA TGCGACATCCCCTC TCCTACACCCCCTCTACTCGTACGACCACCGAACTCATCGCCGGTCCAAACGTGCTTCCATAAGCCGCCATCTGACATGGGAAAGTAGGCGGT CACCGTGCTCCTCCCCTTGTCCAAGACCGGCACCACCAGCATCTCTGTCCCAACCAGGAAT TGTTGGTATGTCATCT TCTGCACACGCTGATCCTCCGGGTAGTGGAGGAAGAGGTGCCGCGCCACGGGAAGGCCCTTCTCCGCCGCCTCCTCGACGAGC TGGATCCGGTAGAACTCCCAGGCTT TGTAGATCTTTGCGCAGCGCGCGAAATGCGCGAGCGTGCGGTTATTGGAGTAGAACTGGCAGTTGGATCCTGGCTTGTTACCCTCGTGGGTGCGGAAGACGACGGTGAAGGCGCTGAGCTCCAGCCATCGGAGGAGGAGCTCCTCGCTGCGGCGGTACCGGAGGAGCGGCAGGTCCACGGTGCAGTAGCCGCCGGCGTCGCCGTGGTT ] [-] EMBL BM419297 [ GAA ATCATAATACTTTGAGATCCCTCAAATTTCTTACAAACCTTTCTCCAACGGTCGACCCAACTCTCACAAACACAGCCGGGAAGCCAATCCGGGCCTCAACCTCGG CTCAGACCCA TGCGANATCCCCTCGTCCTAGACCCCCTCTACTCGTACGACCACCGAACTCATCGCCGGTCCAAACGTGCTTCCATAAGCCGCCATCTGACATGGGAAAGTAGGCGGT CACCGTGCTCCTCCCCTTGTCCAAGACCGGCACCACCAGCATCTCTGTCCCAACCAGGAAT TGTTGGTATGTCATCTCTCTGCACACGCTGATCCTCCGGGTAGTGGAGGAAGAGGTGCCGCGCCACGGGAAGGCCCTTCTCCGCCG CTCCTCGACGAGC TGGATCCGGTAGAACTCCCAGGCTTATGTAG ] [-] EMBL CB646923 [ AGCGGAGGAGCGGCAGGTCGACGGTGCAGTAGCCGCCGGCGTCGCCGTGGTTGAGCGGGAAGCCGGACATGCCGCCGGTGAGGAGGCCGACGACGCTGCTCTTGATGCCGTCGTTCGCCTGCCAGCTCACCATCTGGTCCCCTTCCCAGAACAGCATCGCCCACCTCGAGCTCTCCCTGAACCCCGCCCGCACGAAGAACACCAGCTCGCCGTCGCCGTCGCCGTCGTCGGCGTCGTCCGCGACGCGGCGGTGCTCGCCGGAGCGCCACTCGTCGGCGAACTCGCGGTTGACGCGCGCCCACAGCTCCGGGTACCGGTTGTGCGCCGCGACGGGGCCGTCGTCGCCGGAGCCGGAGGAGTGCAGCCGCGCGTTCAGCGGGAGGCCCTCGCCGAAGTCGGCCATCCAGCCGGCGGCGCCGCCGCGGGCCATCACGGCGAGGACCTCGCCCTTGAACCAGGCGCGCGCGGCCGGGTTGGTGAAGTCCAGCATGGCGACGTCGAACGCCGTGTTGGGCATCATGTACGGCTCGCCGGCGGCGTCCCGGACCAGGAGCCCCAGCTTCTTGGCCTCCTCGAACAGGTGCCTCCTCGCGTTCGCCTTCTTGTCCATCGGGACGAGGCATGGGTTGCAGTAGGTCATGGTCCTGACGCCGCGGCGCCGGAGATCGCGGACCAGATCATTCCATCCGGCGTAGTGGTCGTCGTCTACCTCCCAGTTCCACCATAGCTGGGATCCAATGGACGTCTTCCTC] consensusID : consensus_10503#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 725 fasta sequence [CGGGGCCGTCGTCGCCGGAGCCGGAGGAGTGCAGCCGCGCGTTCAGCGGGAGGCCTTCGCCGAAGTCGGCCATCCAGCCGGCGGCGCCGCCGCGGGCCATCACGGCGAGGACCTCGCCCTTGAACCAGGCGCGCGCGGCCGGGTTGGTGAAGTCCAGCATGGCGACGTCGAACGCCGTGTTGGGCATCATGTACGGCTCGCCGGCGGCGTCCCGGACCAGGAGCCCCAGCTTCTTGGCCTCCTCGAACAGGTGCCTCCTCGCGTTCGCCTTCTTGTCCATCTGCAGCCAGAATGCAGAGACCGGGACGTCGTGGTCCTGCAGCTGCTTCCAGACGCGGCGGACGGCGTCCGTGCCGCCCTGCATCCCGACCACCGCGCCGGACGTGATCCACCGGGGAAGAGCCGGCGGCCTCCCCGTCGACTCCGTGTAGCTCGTGATCAGCTCCGTCGGCGAGCCGCCGTGCAGGATCCTCCCCTGGACTGAACTCCCGTACACCTGAATCTGCACTCTATCAGGCTTTGTCAGGTCAAAAATGGAGTAATCGTATCCCTCGAGGTACAAAGATCTCATCTTTGAGGTCATGTAGAACGGAGACGGAGCATACGTAGTACTCCAGTTTCCTCCAGACCTATACATGACGAAACAAAGTAATAAACCACCATGAACAACAACATACTAAAAAATGCATATCAAGTTATCCAAAAGAAGAGAAGAAAAGTCGTAG] [-] EMBL CB676025 [CGGGGCCGTCGTCGCCGGAGCCGGAGGAGTGCAGCCGCGCGTTCAGCGGGAGGCCTTCGCCGAAGTCGGCCATCCAGCCGGCGGCGCCGCCGCGGGCCATCACGGCGAGGACCTCGCCCTTGAACCAGGCGCGCGCGGCCGGGTTGGTGAAGTCCAGCATGGCGACGTCGAACGCCGTGTTGGGCATCATGTACGGCTCGCCGGCGGCGTCCCGGACCAGGAGCCCCAGCTTCTTGGCCTCCTCGAACAGGTGCCTCCTCGCGTTCGCCTTCTTGTCCATCTGCAGCCAGAATGCAGAGACCGGGACGTCGTGGTCCTGCAGCTGCTTCCAGACGCGGCGGACGGCGTCCGTGCCGCCCTGCATCCCGACCACCGCGCCGGACGTGATCCACCGGGGAAGAGCCGGCGGCCTCCCCGTCGACTCCGTGTAGCTCGTGATCAGCTCCGTCGGCGAGCCGCCGTGCAGGATCCTCCCCTGGACTGAACTCCCGTACACCTGAATCTGCACTCTATCAGGCTTTGTCAGGTCAAAAATGGAGTAATCGTATCCCTCGAGGTACAAAGATCTCATCTTTGAGGTCATGTAGAACGGAGACGGAGCATACGTAGTACTCCAGTTTCCTCCAGACCTATACATGACGAAACAAAGTAATAAACCACCATGAACAACAACATACTAAAAAATGCATATCAAGTTATCCAAAAGAAGAGAAGAAAAGTCGTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10503#0 CCTTTTTTTTCTTTTTGAAACCCAAATTAAATTTCCTTTCTTTTCGTTGTATAAACAATT 60 consensus_10503#1 ------------------------------------------------------------ consensus_10503#0 GGTTATGAAATCATAATACTTTGAGATCCCTCAAATTTCTTACAAACCTTTCTCCAACGG 120 consensus_10503#1 ------------------------------------------------------------ consensus_10503#0 TCGACCCAACTCTCACAAACACAGCCGGGAAGCCAATCCGGGCCTCAACCTCGGCCTCAG 180 consensus_10503#1 ------------------------------------------------------------ consensus_10503#0 ACCCATGCGACATCCCCTCTCCTACACCCCCTCTACTCGTACGACCACCGAACTCATCGC 240 consensus_10503#1 ------------------------------------------------------------ consensus_10503#0 CGGTCCAAACGTGCTTCCATAAGCCGCCATCTGACATGGGAAAGTAGGCGGTCACCGTGC 300 consensus_10503#1 ------------------------------------------------------------ consensus_10503#0 TCCTCCCCTTGTCCAAGACCGGCACCACCAGCATCTCTGTCCCAACCAGGAATTGTTGGT 360 consensus_10503#1 ------------------------------------------------------------ consensus_10503#0 ATGTCATCTTCTGCACACGCTGATCCTCCGGGTAGTGGAGGAAGAGGTGCCGCGCCACGG 420 consensus_10503#1 ------------------------------------------------------------ consensus_10503#0 GAAGGCCCTTCTCCGCCGCCTCCTCGACGAGCTGGATCCGGTAGAACTCCCAGGCTTTGT 480 consensus_10503#1 ------------------------------------------------------------ consensus_10503#0 AGATCTTTGCGCAGCGCGCGAAATGCGCGAGCGTGCGGTTATTGGAGTAGAACTGGCAGT 540 consensus_10503#1 ------------------------------------------------------------ consensus_10503#0 TGGATCCTGGCTTGTTACCCTCGTGGGTGCGGAAGACGACGGTGAAGGCGCTGAGCTCCA 600 consensus_10503#1 ---------------------CGGGGCCGTCGTCGCCGGAGCCGGAGGAGTGCAGCCGC- 38 ** ** * * * ** * * *** * *** * consensus_10503#0 GCCATCGGAGGAGGAGCTCCTCGCTGCGGCGGTAGCGGAGGAGCGGCAGGTCGACGGTGC 660 consensus_10503#1 GCGTTCAGCG--GGAGGCCTTCGCCGAAGTCG---------GCCATCCAGCCGGCGGCGC 87 ** ** * * **** * **** * * * * * * ** *** ** consensus_10503#0 AGTAGCCGCCGGCGTCGCCGTGGTTGAGCGGGAAGCCGGACATGCCGCCGGTGAGGAGGC 720 consensus_10503#1 CGCCGCGGGC--CATCACGGCGAG-GACCTCGCCCTTGAACCAGGCGCGCGCGGCCGGGT 144 * ** * * * ** * * * ** * * * ** * *** * * ** consensus_10503#0 CGACGACGCTGCTCTTGATGCCGTCGTTCGCCTGCCAGCTCACCATCTGGTCCCCTTCCC 780 consensus_10503#1 TGGTGAAGTCCAGCATGGCGACGTCGAACGCCGTGTTGGGCATCATGTA--CGGCTCGCC 202 * ** * * ** * ***** **** * ** *** * * ** ** consensus_10503#0 AGAACAGCATCGCCCACCTCAAGCTCTCCCTGAACCCCGCCCGCACGAAGAA-CACCAGC 839 consensus_10503#1 GG--CGGCGTCCCGGACCAGGAGCCCCAGCTT--CTTGGCCTCCTCGAACAGGTGCCTCC 258 * * ** ** * *** *** * ** * *** * **** * ** * consensus_10503#0 TCGCCGTCGCCGTCGCCGTCGTCGGCGTCGTCCGCGACGCGGCGGTGCTCGCCGGAGCGC 899 consensus_10503#1 TCGCGTTCGCCTTCTTGTCCATCTGCAG---CCAGAATGCAGAGA------CCGGGACGT 309 **** ***** ** * ** ** ** * ** * * **** ** consensus_10503#0 CACTCGTCGGCGAACTCGCGGTTGACGCGCGCCCACAGCTCCGGGTACCGGTTGTGCGCC 959 consensus_10503#1 C--------GTGGTCCTGCAGCTG-CTTCCAGACGCGGCGGACGGCGTCCGTGCCGCCCT 360 * * * * ** * ** * * * * ** ** * ** ** * consensus_10503#0 GCGACGGGGCCGTCGTCGCCGGAGCCGGAGGAGTGCAGCCGCGCGTTCAGCGGGAGGCCC 1019 consensus_10503#1 GCATCCCGACCACCG-CGCCGGACGTGATCCACCGGGGAAGAGC---CGGCGGCC--TCC 414 ** * * ** ** ******* * * * * * ** * **** ** consensus_10503#0 TCGCCGAAGTCGGCCATCCAGCCGGCGGCGCCGCCG-CGGGCCATCACGGCGAGGACCTC 1078 consensus_10503#1 CCGTCGACTCCGTGTAGCTCGTGATCAGCTCCGTCGGCGAGCCGCCGTGC--AGGATCCT 472 ** *** ** * * * * ** *** ** ** *** * * **** * consensus_10503#0 GCCCTTGAACCAGGCGCGCGCGGCCGGGTTGGTGAAGTCCAGCATGGCGACGTCGAACGC 1138 consensus_10503#1 -CCCCTGGACTGAACTCCCGTACACCTGAATCTGCACTCTATCA-GGCTTTGTCAGGTCA 530 *** ** ** * * ** * * ** * ** * ** *** *** consensus_10503#0 CGTGTTGGGCATCATGTACGGCTCGCCG-GCGGCGTCCCGGACCAGGAGCCCCAGCTTCT 1197 consensus_10503#1 AAAATGGAGTAAT-CGTATCCCTCGAGGTACAAAGATCTCATCTTTGAGGTCATGTAGAA 589 * * * * *** **** * * * * * *** * * consensus_10503#0 TGGCCTCCTCGAACAGGTGCCTCCTCGCGTTCGCCTTCTTGTCCAT-CGGGACGAGGCAT 1256 consensus_10503#1 CGGAGACGGAGCATACGTAGTACTCCAGTTTC--CTCCAGACCTATACATGACGAAACAA 647 ** * * * * ** * * *** ** * * ** * ***** ** consensus_10503#0 GGGTTGCAGTAGGTCATGGTCCTGACGCCGCGGCGCCGGAGATCGCGGACCAGATCATTC 1316 consensus_10503#1 AG----TAATAAACCACCAT--GAACAACAACATACTAAAAAATGCATATCAAGTTATCC 701 * * ** ** * ** * * * * ** * ** * ** * consensus_10503#0 CATCCGGCGTAGTGGTCGTCGTCTACCTCCCAGTTCCACCATAGCTGGGATCCAATGGAC 1376 consensus_10503#1 AAAAGAAGAGAAGAAAAGTCGTAG------------------------------------ 725 * * ***** consensus_10503#0 GTCTTCCTC 1385 consensus_10503#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||