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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10515#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1120 fasta sequence
[GCCGCCTCCGCCGTGGCCGTCCCCATCCACCTCCCCTCCCCACCACCACCACGTCCCACCGCCATCGCCGCCGGCCCGACCACGAGCCTTGCCCCCGCCGACCTCAGCCGCGCCGCCACGGCCATTGCCCACCACTCACAGCCTCTCCTCCTCCGCCGTTGCCGCTCGCGCGGTGCAGTGGTGCGCGCGCGCGCGCTTCTTGACCGGTGTCGCGTGCGTGTGAGCCGATGGGGGCGCGGGAGTACTACGACTACCGGAGGGCCATCTACGGCGACATCACCCACAAGGCCATCCTCGTCGACGCCGCCGGGACGCTCCTCGCCCCCACCGAGCCCATGGCGCAGGTATACAGAACAATTGGCGAAAAGTATGGAGTCAACTACTCAGAGGATGAGATCTTGATGAGATACAGGAGGGCTTATGCGCAGCCATGGGGTAGATCGC-GGCTGAGGTATGTGGATGATGGTAGGCCCTTCTGGCAGCATATAGTTAGCTCTTCAACTGGATGCTCAGATTTACAGTACTTTGAGGAACTTTATCAGTACTATACAACTGCAAAGGCTTGGCAGCTCTGCGACCCTGACGCTAAATATGTTTTTGAAGCATTGAGAAAGGCTGGTGTAAAAACAGCTGTTGTATCCAACTTTGACACACGTC-TTCGGCCACTTTTACAGGCCCTGAATTGTGATCACTGGTTTGATGCAGTTGCTGTATCTGCTGAGGTTGCTGCGGAAAAGCCAAACCCAACAATATTCTTGAAGGCTTGCGAGTTTTTAGGTGTGAAGCCTGAAGAAGCTGTGCATATTGGTGATGACCGCAGGAATGATCTCTGGGGAGCCAGGGATGCAGGCTGTGATGCCTGGCTCTGGGGCAGTGATGTTTACTCTTTCAAGGAGGTCGCAGAAAGGATCGGAGTTAAGGTGTAAGGAGTCGTTCGTCCGCTGGGTCACCTGAAAT-AAGAAGGCCGGGAGGTGTTGCATTTTTGTACATAGCGGCAACCCTTGTTGCTCCACTGATGTACATATTTTTCCAGAGAATAACCGATGGCAGTGTAGTATATATCTGTATGACTGCATTTGCATTTGAGACTTTGAGCGCTCAATTTACGTTAAAAAAAAAA]
[+] EMBL BI305208 [GCCGCCTCCGCCGTGGCCGTCCCCATCCACCTCCCCTCCCCACCACCACCACGTCCCACCGCCATCGCCGCCGGCCCGACCACGAGCCTTGCCCCCGCCGACCTCAGCCGCGCCGCCACGGCCATTGCCCACCACTCACAGCCTCTCCTCCTCCGCCGTTGCCGCTCGCGCGGTGCAGTGGTGCGCGCGCGCGCGCTTCTTGACCGGTGTCGCGTGCGTGTGAGCCGATGGGGGCGCGGGAGTACTACGACTACCGGAGGGCCATCTACGGCGACATCACCCACAAGGCCATCCTCGTCGACGCCGCCGGGACGCTCCTCGCCCCCACCGAGCCCATGGCGCAGGTATACAGAACAATTGGCGAAAAGTATGGAGTCAACTACTCAGAGGATGAGATCTTGATGAGATACAGGAGGGCTTATGCGCAGCCATGGGGTAGATCGC GGCTGAGGTATGTGGATGATGGTAGGCCCTTCTGGCAGCATATAGTTAGCGCTTCTACTGGATGCTCAGATTTACAGTACTTTGAGGAACTTTATCAGTACTATACAACTGCAAAGGCTTGGCAGCTCTGCGACCCTGACGCTAAATATGTTTTTGAAGCATTGAGAAAGGCTGGTGTAAAAACAGCTGTTGTATCCAACTTTGACACACGTC TTCGGCCACTTTTACAGGCCCTGAATTGTGATCACTGGTTTGATGCAGTTGCTGTATCTGCTGAGGTTGCTGCGGAAAAcc ]
[+] EMBL BI305189 [ ACCACGTCCCACCGCCATCGCCGCCGGCCCGACCACGAGCGTTGCCCCCGCCGACCTCAGCCGCGCCGCCAGGGCCATTGCCCACCACTCACAGCCTCTCCTCCTCCGCCGTTGCCGCTCGCGCGGTGCAGTGGTGCGCGCGCGCGCGCTTCTTGACCGGTGTCGCGTGCGTGTGAGCCGATGGGGGCGCGGGAGTACTACGACTACCGGAGGGCCATCTACGGCGACATCACCCACAAGGCCATCCTCGTCGACGCCGTCGGGACGCTCCTCGCCCCCACCGAGCCCATGGCGCAGGTATACAGAACAATTGGCGAAAAGTATGGAGTCAACTACTCAGAGGATGAGATCTTGATGAGATACAGGAGGGCTTATGCGCAGCCATGGGGTAGATCGC GGCTGAGGTATGTGGATGATGGTAGGCCCTTCTGGCAGCATATAGa ]
[+] EMBL OS0596A [ CCCACAAGGCCATCCTCGTCGACGCCGCCGGGACGCTCCTCGCCCCCACCGAGCCCATGGCGCAGGTATACAGAACAATTGGCGAAAAGTATGGAGTCAACTACTCAGAGGATGAGATCTTGATGAGATACAGGAGGGCTTATGCGCA NCATGGGGTAGATCGC GGCTGAGGTATGTGGATGATGGTAGGCCCTTCTGGCAGCATATAGTTAGCTCTTCAACTGGATGCTCAGATTTACAGTACTTTGAGGAACTTTATCAGTACTATACAACTGCAAAGGCTTGGCAGCTCTGCGACCCTGACGCTAAATATGTTTTTGAAGCATTGAGAAAGGCTGGTGTAAAAACAGCTGTTGTATCCANCTTTGACACACGTCTTTCGGCCACTTTTACAGGNCCTGAATTGTGATCACTGGTTTGATGCAGTTGCTGTATCTGCTGAGGTTGCTGCGG AAAGGCAAACCNNACAATATTNTNG AGGGTTGCGAG TTTTAGGTGT NAGGCTGAGGAg ]
[+] EMBL AU091627 [ GGGTAGATCGCGGGNTAAGGTATGTGGATGATGGTAGGCCCTTCTGGCAGCATATAGTTAGCTCTTCAACTGNATGCTCAGATTTACAGTACTTTGAGGAACTTTATCAGTACTATACAACTGCAAAGGCTTGGCAGCTCTGCGACCCTGACGCTAAATATGTTTTTGAAGCATTGAGAAAGGCTGGTGTAAAAACAGCTGTTGTATCCAACTTTGACACACGTC TTCGGCCACTTTTACAGGCCCTGAATTGTGATCACTGGTTTGATGCAGTTGCTGTATCTGCTGAGGTTGCTGCGGAAAAGCCAAACCCAACAATATTCTTGAAGGCTTGCGAGTTTTTAGGTGTGAAGCCTGAAGAAGCTGTGCATATTGGTGATGACCGCAGGAATGATCTCTGGGGAGCCAGGGATGCAGGCTGTGATGCCTGGCTCTGGGGCAGTGATGTTTACTCTTTCAAGGAGGTCGCAGAAAGGATCGGAGTTAAGGTGTAAGGAGTCGTTCGTCCGCTGGGTCACCTGAAAT AAGAAGGCCGGGAGGTGTTGCATTTTTGTACATAGCGGCAACCCTTGTTGCTCCACTGATGTACATATTTTTCCAGAGAATAACCGATGGCAGTGTAGTATATATCTGTATGACTGCATTTGCATTTGAGACTTTGAGCGCTCAATTTACGTTAAAAAAAAAA]
[+] EMBL AU174703 [ GGCTGGTGTAAAAACAGCTGTTGTATCCAACTTTGACACACGTC TTCGGCCACTTTTACAGGCCCTGAATTGTGATCACTGGTTTGATGCAGTTGCTGTATCTGCTGAGGTTGCTGCGGAAAAGCCAAACCCAACAATATTCTTGAAGGCTTGCGAGTTTTTAGGTGTGAAGCCTGAAGAAGCTGTGCATATTGGTGATGACCGCAGGAATGATCTCTGGGGAGCCAGGGATGCAGGCTGTGATGCCTGGCTCTGGGGCAGTGATGTTTACTCTTTCAAGGAGGTCGCAGAAAGGATCGGAGTTAAGGTGTAAGGAGTCGTTCGTCCGCTGGGTCACCTGAAATAAAGAAGGCCGGGAGGTGTTGCATTTTTGTACATANCGG ]
consensusID : consensus_10515#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 323 fasta sequence
[GAGGAGGAAGGGAAAAAGGGGAAGAAAAAGGGGGGGGAGAGGGGNNGGGGGGGANGNNGNNNNNNNNGGGGAAGNNCACCACCACCACGTCCCACCGCCATCGCCGCCGGCCCGACCACGAGCCTTGCCCCCGCCGACCTCAGCCGCGCCGCCACGGCCATTGCCCACCACTCACAGCCTCTCCTCCTCCGCCGTTGCCGCTCGCGCGGTGCAGTGGTGCGCGCGCGCGCGCTTCTTGACCGGTGTCGCGTGCGTGTGTGTGAAGGAGGAGTTTGAGTTTGTGTTCTTCGTTGGTTTATAGGAGGAGGAGGAGTGGTGAGTTG]
[-] EMBL CA756999 [GAGGAGGAAGGGAAAAAGGGGAAGAAAAAGGGGGGGGAGAGGGGNNGGGGGGGANGNNGNNNNNNNNGGGGAAGNNCACCACCACCACGTCCCACCGCCATCGCCGCCGGCCCGACCACGAGCCTTGCCCCCGCCGACCTCAGCCGCGCCGCCACGGCCATTGCCCACCACTCACAGCCTCTCCTCCTCCGCCGTTGCCGCTCGCGCGGTGCAGTGGTGCGCGCGCGCGCGCTTCT ]
[-] EMBL CB629446 [ tcccCACCACCACCACGTCCCACCGCCATCGCCGCCGGCCCGACCACGAGCCTTGCCCCCGCCGACCTCAGCCGCGCCGCCACGGCCATTGCCCACCACTCACAGCCTCTCCTCCTCCGCCGTTGCCGCTCGCGCGGTGCAGTGGTGCGCGCGCGCGCGCTTCTTGACCGGTGTCGCGTGCGTGTGTGTGAAGGAGGAGTTTGAGTTTGTGTTCTTCGTTGGTTTATAGGAGGAGGAGGAGTGGTGAGTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10515#0 ----------------------------------GCCGCCTCCGCCGTGGCCGTCCCCAT 26
consensus_10515#1 GAGGAGGAAGGGAAAAAGGGGAAGAAAAAGGGGGGGGAGAGGGGNNGGGGGGGANGNNGN 60
* * * ** *
consensus_10515#0 CCACCTCCCCTC--CCCACCACCACCACGTCCCACCGCCATCGCCGCCGGCCCGACCACG 84
consensus_10515#1 NNNNNNNGGGGAAGNNCACCACCACCACGTCCCACCGCCATCGCCGCCGGCCCGACCACG 120
********************************************
consensus_10515#0 AGCCTTGCCCCCGCCGACCTCAGCCGCGCCGCCACGGCCATTGCCCACCACTCACAGCCT 144
consensus_10515#1 AGCCTTGCCCCCGCCGACCTCAGCCGCGCCGCCACGGCCATTGCCCACCACTCACAGCCT 180
************************************************************
consensus_10515#0 CTCCTCCTCCGCCGTTGCCGCTCGCGCGGTGCAGTGGTGCGCGCGCGCGCGCTTCTTGAC 204
consensus_10515#1 CTCCTCCTCCGCCGTTGCCGCTCGCGCGGTGCAGTGGTGCGCGCGCGCGCGCTTCTTGAC 240
************************************************************
consensus_10515#0 CGGTGTCGCGTGCGTGTGAGCCGATGGGGGCGCGGGAGTACTACGACTACCGGAGGGCCA 264
consensus_10515#1 CGGTGTCGCGTGCGTGTGTGT-GAAGGAGGAGTTTGAGT-TTGTGTTCTTCGTTGGTTTA 298
****************** * ** ** ** * **** * * ** ** *
consensus_10515#0 TCTACGGCGACATCACCCACAAGGCCATCCTCGTCGACGCCGCCGGGACGCTCCTCGCCC 324
consensus_10515#1 TAGGAGGAGG-AGGAGTGGTGAGTTG---------------------------------- 323
* ** * * * **
consensus_10515#0 CCACCGAGCCCATGGCGCAGGTATACAGAACAATTGGCGAAAAGTATGGAGTCAACTACT 384
consensus_10515#1 ------------------------------------------------------------
consensus_10515#0 CAGAGGATGAGATCTTGATGAGATACAGGAGGGCTTATGCGCAGCCATGGGGTAGATCGC 444
consensus_10515#1 ------------------------------------------------------------
consensus_10515#0 GGCTGAGGTATGTGGATGATGGTAGGCCCTTCTGGCAGCATATAGTTAGCTCTTCAACTG 504
consensus_10515#1 ------------------------------------------------------------
consensus_10515#0 GATGCTCAGATTTACAGTACTTTGAGGAACTTTATCAGTACTATACAACTGCAAAGGCTT 564
consensus_10515#1 ------------------------------------------------------------
consensus_10515#0 GGCAGCTCTGCGACCCTGACGCTAAATATGTTTTTGAAGCATTGAGAAAGGCTGGTGTAA 624
consensus_10515#1 ------------------------------------------------------------
consensus_10515#0 AAACAGCTGTTGTATCCAACTTTGACACACGTCTTCGGCCACTTTTACAGGCCCTGAATT 684
consensus_10515#1 ------------------------------------------------------------
consensus_10515#0 GTGATCACTGGTTTGATGCAGTTGCTGTATCTGCTGAGGTTGCTGCGGAAAAGCCAAACC 744
consensus_10515#1 ------------------------------------------------------------
consensus_10515#0 CAACAATATTCTTGAAGGCTTGCGAGTTTTTAGGTGTGAAGCCTGAAGAAGCTGTGCATA 804
consensus_10515#1 ------------------------------------------------------------
consensus_10515#0 TTGGTGATGACCGCAGGAATGATCTCTGGGGAGCCAGGGATGCAGGCTGTGATGCCTGGC 864
consensus_10515#1 ------------------------------------------------------------
consensus_10515#0 TCTGGGGCAGTGATGTTTACTCTTTCAAGGAGGTCGCAGAAAGGATCGGAGTTAAGGTGT 924
consensus_10515#1 ------------------------------------------------------------
consensus_10515#0 AAGGAGTCGTTCGTCCGCTGGGTCACCTGAAATAAGAAGGCCGGGAGGTGTTGCATTTTT 984
consensus_10515#1 ------------------------------------------------------------
consensus_10515#0 GTACATAGCGGCAACCCTTGTTGCTCCACTGATGTACATATTTTTCCAGAGAATAACCGA 1044
consensus_10515#1 ------------------------------------------------------------
consensus_10515#0 TGGCAGTGTAGTATATATCTGTATGACTGCATTTGCATTTGAGACTTTGAGCGCTCAATT 1104
consensus_10515#1 ------------------------------------------------------------
consensus_10515#0 TACGTTAAAAAAAAAA 1120
consensus_10515#1 ----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||