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Oryza sativa
cluster # 10515 cluster # 10515       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10515#0 length = 1120 sequences # 5  
consensus_10515#1 length = 323 sequences # 2  

consensusID : consensus_10515#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1120
fasta sequence
                              [GCCGCCTCCGCCGTGGCCGTCCCCATCCACCTCCCCTCCCCACCACCACCACGTCCCACCGCCATCGCCGCCGGCCCGACCACGAGCCTTGCCCCCGCCGACCTCAGCCGCGCCGCCACGGCCATTGCCCACCACTCACAGCCTCTCCTCCTCCGCCGTTGCCGCTCGCGCGGTGCAGTGGTGCGCGCGCGCGCGCTTCTTGACCGGTGTCGCGTGCGTGTGAGCCGATGGGGGCGCGGGAGTACTACGACTACCGGAGGGCCATCTACGGCGACATCACCCACAAGGCCATCCTCGTCGACGCCGCCGGGACGCTCCTCGCCCCCACCGAGCCCATGGCGCAGGTATACAGAACAATTGGCGAAAAGTATGGAGTCAACTACTCAGAGGATGAGATCTTGATGAGATACAGGAGGGCTTATGCGCAGCCATGGGGTAGATCGC-GGCTGAGGTATGTGGATGATGGTAGGCCCTTCTGGCAGCATATAGTTAGCTCTTCAACTGGATGCTCAGATTTACAGTACTTTGAGGAACTTTATCAGTACTATACAACTGCAAAGGCTTGGCAGCTCTGCGACCCTGACGCTAAATATGTTTTTGAAGCATTGAGAAAGGCTGGTGTAAAAACAGCTGTTGTATCCAACTTTGACACACGTC-TTCGGCCACTTTTACAGGCCCTGAATTGTGATCACTGGTTTGATGCAGTTGCTGTATCTGCTGAGGTTGCTGCGGAAAAGCCAAACCCAACAATATTCTTGAAGGCTTGCGAGTTTTTAGGTGTGAAGCCTGAAGAAGCTGTGCATATTGGTGATGACCGCAGGAATGATCTCTGGGGAGCCAGGGATGCAGGCTGTGATGCCTGGCTCTGGGGCAGTGATGTTTACTCTTTCAAGGAGGTCGCAGAAAGGATCGGAGTTAAGGTGTAAGGAGTCGTTCGTCCGCTGGGTCACCTGAAAT-AAGAAGGCCGGGAGGTGTTGCATTTTTGTACATAGCGGCAACCCTTGTTGCTCCACTGATGTACATATTTTTCCAGAGAATAACCGATGGCAGTGTAGTATATATCTGTATGACTGCATTTGCATTTGAGACTTTGAGCGCTCAATTTACGTTAAAAAAAAAA]

[+] EMBL BI305208             [GCCGCCTCCGCCGTGGCCGTCCCCATCCACCTCCCCTCCCCACCACCACCACGTCCCACCGCCATCGCCGCCGGCCCGACCACGAGCCTTGCCCCCGCCGACCTCAGCCGCGCCGCCACGGCCATTGCCCACCACTCACAGCCTCTCCTCCTCCGCCGTTGCCGCTCGCGCGGTGCAGTGGTGCGCGCGCGCGCGCTTCTTGACCGGTGTCGCGTGCGTGTGAGCCGATGGGGGCGCGGGAGTACTACGACTACCGGAGGGCCATCTACGGCGACATCACCCACAAGGCCATCCTCGTCGACGCCGCCGGGACGCTCCTCGCCCCCACCGAGCCCATGGCGCAGGTATACAGAACAATTGGCGAAAAGTATGGAGTCAACTACTCAGAGGATGAGATCTTGATGAGATACAGGAGGGCTTATGCGCAGCCATGGGGTAGATCGC GGCTGAGGTATGTGGATGATGGTAGGCCCTTCTGGCAGCATATAGTTAGCGCTTCTACTGGATGCTCAGATTTACAGTACTTTGAGGAACTTTATCAGTACTATACAACTGCAAAGGCTTGGCAGCTCTGCGACCCTGACGCTAAATATGTTTTTGAAGCATTGAGAAAGGCTGGTGTAAAAACAGCTGTTGTATCCAACTTTGACACACGTC TTCGGCCACTTTTACAGGCCCTGAATTGTGATCACTGGTTTGATGCAGTTGCTGTATCTGCTGAGGTTGCTGCGGAAAAcc                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BI305189             [                                               ACCACGTCCCACCGCCATCGCCGCCGGCCCGACCACGAGCGTTGCCCCCGCCGACCTCAGCCGCGCCGCCAGGGCCATTGCCCACCACTCACAGCCTCTCCTCCTCCGCCGTTGCCGCTCGCGCGGTGCAGTGGTGCGCGCGCGCGCGCTTCTTGACCGGTGTCGCGTGCGTGTGAGCCGATGGGGGCGCGGGAGTACTACGACTACCGGAGGGCCATCTACGGCGACATCACCCACAAGGCCATCCTCGTCGACGCCGTCGGGACGCTCCTCGCCCCCACCGAGCCCATGGCGCAGGTATACAGAACAATTGGCGAAAAGTATGGAGTCAACTACTCAGAGGATGAGATCTTGATGAGATACAGGAGGGCTTATGCGCAGCCATGGGGTAGATCGC GGCTGAGGTATGTGGATGATGGTAGGCCCTTCTGGCAGCATATAGa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL OS0596A              [                                                                                                                                                                                                                                                                                       CCCACAAGGCCATCCTCGTCGACGCCGCCGGGACGCTCCTCGCCCCCACCGAGCCCATGGCGCAGGTATACAGAACAATTGGCGAAAAGTATGGAGTCAACTACTCAGAGGATGAGATCTTGATGAGATACAGGAGGGCTTATGCGCA NCATGGGGTAGATCGC GGCTGAGGTATGTGGATGATGGTAGGCCCTTCTGGCAGCATATAGTTAGCTCTTCAACTGGATGCTCAGATTTACAGTACTTTGAGGAACTTTATCAGTACTATACAACTGCAAAGGCTTGGCAGCTCTGCGACCCTGACGCTAAATATGTTTTTGAAGCATTGAGAAAGGCTGGTGTAAAAACAGCTGTTGTATCCANCTTTGACACACGTCTTTCGGCCACTTTTACAGGNCCTGAATTGTGATCACTGGTTTGATGCAGTTGCTGTATCTGCTGAGGTTGCTGCGG AAAGGCAAACCNNACAATATTNTNG AGGGTTGCGAG TTTTAGGTGT NAGGCTGAGGAg                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU091627             [                                                                                                                                                                                                                                                                                                                                                                                                                                                 GGGTAGATCGCGGGNTAAGGTATGTGGATGATGGTAGGCCCTTCTGGCAGCATATAGTTAGCTCTTCAACTGNATGCTCAGATTTACAGTACTTTGAGGAACTTTATCAGTACTATACAACTGCAAAGGCTTGGCAGCTCTGCGACCCTGACGCTAAATATGTTTTTGAAGCATTGAGAAAGGCTGGTGTAAAAACAGCTGTTGTATCCAACTTTGACACACGTC TTCGGCCACTTTTACAGGCCCTGAATTGTGATCACTGGTTTGATGCAGTTGCTGTATCTGCTGAGGTTGCTGCGGAAAAGCCAAACCCAACAATATTCTTGAAGGCTTGCGAGTTTTTAGGTGTGAAGCCTGAAGAAGCTGTGCATATTGGTGATGACCGCAGGAATGATCTCTGGGGAGCCAGGGATGCAGGCTGTGATGCCTGGCTCTGGGGCAGTGATGTTTACTCTTTCAAGGAGGTCGCAGAAAGGATCGGAGTTAAGGTGTAAGGAGTCGTTCGTCCGCTGGGTCACCTGAAAT AAGAAGGCCGGGAGGTGTTGCATTTTTGTACATAGCGGCAACCCTTGTTGCTCCACTGATGTACATATTTTTCCAGAGAATAACCGATGGCAGTGTAGTATATATCTGTATGACTGCATTTGCATTTGAGACTTTGAGCGCTCAATTTACGTTAAAAAAAAAA]
[+] EMBL AU174703             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GGCTGGTGTAAAAACAGCTGTTGTATCCAACTTTGACACACGTC TTCGGCCACTTTTACAGGCCCTGAATTGTGATCACTGGTTTGATGCAGTTGCTGTATCTGCTGAGGTTGCTGCGGAAAAGCCAAACCCAACAATATTCTTGAAGGCTTGCGAGTTTTTAGGTGTGAAGCCTGAAGAAGCTGTGCATATTGGTGATGACCGCAGGAATGATCTCTGGGGAGCCAGGGATGCAGGCTGTGATGCCTGGCTCTGGGGCAGTGATGTTTACTCTTTCAAGGAGGTCGCAGAAAGGATCGGAGTTAAGGTGTAAGGAGTCGTTCGTCCGCTGGGTCACCTGAAATAAAGAAGGCCGGGAGGTGTTGCATTTTTGTACATANCGG                                                                                                                             ]


>consensus_10515#0 GCCGCCTCCGCCGTGGCCGTCCCCATCCACCTCCCCTCCCCACCACCACCACGTCCCACC GCCATCGCCGCCGGCCCGACCACGAGCCTTGCCCCCGCCGACCTCAGCCGCGCCGCCACG GCCATTGCCCACCACTCACAGCCTCTCCTCCTCCGCCGTTGCCGCTCGCGCGGTGCAGTG GTGCGCGCGCGCGCGCTTCTTGACCGGTGTCGCGTGCGTGTGAGCCGATGGGGGCGCGGG AGTACTACGACTACCGGAGGGCCATCTACGGCGACATCACCCACAAGGCCATCCTCGTCG ACGCCGCCGGGACGCTCCTCGCCCCCACCGAGCCCATGGCGCAGGTATACAGAACAATTG GCGAAAAGTATGGAGTCAACTACTCAGAGGATGAGATCTTGATGAGATACAGGAGGGCTT ATGCGCAGCCATGGGGTAGATCGCGGCTGAGGTATGTGGATGATGGTAGGCCCTTCTGGC AGCATATAGTTAGCTCTTCAACTGGATGCTCAGATTTACAGTACTTTGAGGAACTTTATC AGTACTATACAACTGCAAAGGCTTGGCAGCTCTGCGACCCTGACGCTAAATATGTTTTTG AAGCATTGAGAAAGGCTGGTGTAAAAACAGCTGTTGTATCCAACTTTGACACACGTCTTC GGCCACTTTTACAGGCCCTGAATTGTGATCACTGGTTTGATGCAGTTGCTGTATCTGCTG AGGTTGCTGCGGAAAAGCCAAACCCAACAATATTCTTGAAGGCTTGCGAGTTTTTAGGTG TGAAGCCTGAAGAAGCTGTGCATATTGGTGATGACCGCAGGAATGATCTCTGGGGAGCCA GGGATGCAGGCTGTGATGCCTGGCTCTGGGGCAGTGATGTTTACTCTTTCAAGGAGGTCG CAGAAAGGATCGGAGTTAAGGTGTAAGGAGTCGTTCGTCCGCTGGGTCACCTGAAATAAG AAGGCCGGGAGGTGTTGCATTTTTGTACATAGCGGCAACCCTTGTTGCTCCACTGATGTA CATATTTTTCCAGAGAATAACCGATGGCAGTGTAGTATATATCTGTATGACTGCATTTGC ATTTGAGACTTTGAGCGCTCAATTTACGTTAAAAAAAAAA



consensusID : consensus_10515#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 323
fasta sequence
                              [GAGGAGGAAGGGAAAAAGGGGAAGAAAAAGGGGGGGGAGAGGGGNNGGGGGGGANGNNGNNNNNNNNGGGGAAGNNCACCACCACCACGTCCCACCGCCATCGCCGCCGGCCCGACCACGAGCCTTGCCCCCGCCGACCTCAGCCGCGCCGCCACGGCCATTGCCCACCACTCACAGCCTCTCCTCCTCCGCCGTTGCCGCTCGCGCGGTGCAGTGGTGCGCGCGCGCGCGCTTCTTGACCGGTGTCGCGTGCGTGTGTGTGAAGGAGGAGTTTGAGTTTGTGTTCTTCGTTGGTTTATAGGAGGAGGAGGAGTGGTGAGTTG]

[-] EMBL CA756999             [GAGGAGGAAGGGAAAAAGGGGAAGAAAAAGGGGGGGGAGAGGGGNNGGGGGGGANGNNGNNNNNNNNGGGGAAGNNCACCACCACCACGTCCCACCGCCATCGCCGCCGGCCCGACCACGAGCCTTGCCCCCGCCGACCTCAGCCGCGCCGCCACGGCCATTGCCCACCACTCACAGCCTCTCCTCCTCCGCCGTTGCCGCTCGCGCGGTGCAGTGGTGCGCGCGCGCGCGCTTCT                                                                                       ]
[-] EMBL CB629446             [                                                                        tcccCACCACCACCACGTCCCACCGCCATCGCCGCCGGCCCGACCACGAGCCTTGCCCCCGCCGACCTCAGCCGCGCCGCCACGGCCATTGCCCACCACTCACAGCCTCTCCTCCTCCGCCGTTGCCGCTCGCGCGGTGCAGTGGTGCGCGCGCGCGCGCTTCTTGACCGGTGTCGCGTGCGTGTGTGTGAAGGAGGAGTTTGAGTTTGTGTTCTTCGTTGGTTTATAGGAGGAGGAGGAGTGGTGAGTTG]


>consensus_10515#1 GAGGAGGAAGGGAAAAAGGGGAAGAAAAAGGGGGGGGAGAGGGGNNGGGGGGGANGNNGN NNNNNNNGGGGAAGNNCACCACCACCACGTCCCACCGCCATCGCCGCCGGCCCGACCACG AGCCTTGCCCCCGCCGACCTCAGCCGCGCCGCCACGGCCATTGCCCACCACTCACAGCCT CTCCTCCTCCGCCGTTGCCGCTCGCGCGGTGCAGTGGTGCGCGCGCGCGCGCTTCTTGAC CGGTGTCGCGTGCGTGTGTGTGAAGGAGGAGTTTGAGTTTGTGTTCTTCGTTGGTTTATA GGAGGAGGAGGAGTGGTGAGTTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10515#0      ----------------------------------GCCGCCTCCGCCGTGGCCGTCCCCAT 26
consensus_10515#1      GAGGAGGAAGGGAAAAAGGGGAAGAAAAAGGGGGGGGAGAGGGGNNGGGGGGGANGNNGN 60
                                                         *        *  * **  *       

consensus_10515#0      CCACCTCCCCTC--CCCACCACCACCACGTCCCACCGCCATCGCCGCCGGCCCGACCACG 84
consensus_10515#1      NNNNNNNGGGGAAGNNCACCACCACCACGTCCCACCGCCATCGCCGCCGGCCCGACCACG 120
                                       ********************************************

consensus_10515#0      AGCCTTGCCCCCGCCGACCTCAGCCGCGCCGCCACGGCCATTGCCCACCACTCACAGCCT 144
consensus_10515#1      AGCCTTGCCCCCGCCGACCTCAGCCGCGCCGCCACGGCCATTGCCCACCACTCACAGCCT 180
                       ************************************************************

consensus_10515#0      CTCCTCCTCCGCCGTTGCCGCTCGCGCGGTGCAGTGGTGCGCGCGCGCGCGCTTCTTGAC 204
consensus_10515#1      CTCCTCCTCCGCCGTTGCCGCTCGCGCGGTGCAGTGGTGCGCGCGCGCGCGCTTCTTGAC 240
                       ************************************************************

consensus_10515#0      CGGTGTCGCGTGCGTGTGAGCCGATGGGGGCGCGGGAGTACTACGACTACCGGAGGGCCA 264
consensus_10515#1      CGGTGTCGCGTGCGTGTGTGT-GAAGGAGGAGTTTGAGT-TTGTGTTCTTCGTTGGTTTA 298
                       ****************** *  ** ** ** *   ****  *  *     **  **   *

consensus_10515#0      TCTACGGCGACATCACCCACAAGGCCATCCTCGTCGACGCCGCCGGGACGCTCCTCGCCC 324
consensus_10515#1      TAGGAGGAGG-AGGAGTGGTGAGTTG---------------------------------- 323
                       *    ** *  *  *      **                                     

consensus_10515#0      CCACCGAGCCCATGGCGCAGGTATACAGAACAATTGGCGAAAAGTATGGAGTCAACTACT 384
consensus_10515#1      ------------------------------------------------------------
                                                                                   

consensus_10515#0      CAGAGGATGAGATCTTGATGAGATACAGGAGGGCTTATGCGCAGCCATGGGGTAGATCGC 444
consensus_10515#1      ------------------------------------------------------------
                                                                                   

consensus_10515#0      GGCTGAGGTATGTGGATGATGGTAGGCCCTTCTGGCAGCATATAGTTAGCTCTTCAACTG 504
consensus_10515#1      ------------------------------------------------------------
                                                                                   

consensus_10515#0      GATGCTCAGATTTACAGTACTTTGAGGAACTTTATCAGTACTATACAACTGCAAAGGCTT 564
consensus_10515#1      ------------------------------------------------------------
                                                                                   

consensus_10515#0      GGCAGCTCTGCGACCCTGACGCTAAATATGTTTTTGAAGCATTGAGAAAGGCTGGTGTAA 624
consensus_10515#1      ------------------------------------------------------------
                                                                                   

consensus_10515#0      AAACAGCTGTTGTATCCAACTTTGACACACGTCTTCGGCCACTTTTACAGGCCCTGAATT 684
consensus_10515#1      ------------------------------------------------------------
                                                                                   

consensus_10515#0      GTGATCACTGGTTTGATGCAGTTGCTGTATCTGCTGAGGTTGCTGCGGAAAAGCCAAACC 744
consensus_10515#1      ------------------------------------------------------------
                                                                                   

consensus_10515#0      CAACAATATTCTTGAAGGCTTGCGAGTTTTTAGGTGTGAAGCCTGAAGAAGCTGTGCATA 804
consensus_10515#1      ------------------------------------------------------------
                                                                                   

consensus_10515#0      TTGGTGATGACCGCAGGAATGATCTCTGGGGAGCCAGGGATGCAGGCTGTGATGCCTGGC 864
consensus_10515#1      ------------------------------------------------------------
                                                                                   

consensus_10515#0      TCTGGGGCAGTGATGTTTACTCTTTCAAGGAGGTCGCAGAAAGGATCGGAGTTAAGGTGT 924
consensus_10515#1      ------------------------------------------------------------
                                                                                   

consensus_10515#0      AAGGAGTCGTTCGTCCGCTGGGTCACCTGAAATAAGAAGGCCGGGAGGTGTTGCATTTTT 984
consensus_10515#1      ------------------------------------------------------------
                                                                                   

consensus_10515#0      GTACATAGCGGCAACCCTTGTTGCTCCACTGATGTACATATTTTTCCAGAGAATAACCGA 1044
consensus_10515#1      ------------------------------------------------------------
                                                                                   

consensus_10515#0      TGGCAGTGTAGTATATATCTGTATGACTGCATTTGCATTTGAGACTTTGAGCGCTCAATT 1104
consensus_10515#1      ------------------------------------------------------------
                                                                                   

consensus_10515#0      TACGTTAAAAAAAAAA 1120
consensus_10515#1      ----------------
                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)