These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10515#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1120 fasta sequence [GCCGCCTCCGCCGTGGCCGTCCCCATCCACCTCCCCTCCCCACCACCACCACGTCCCACCGCCATCGCCGCCGGCCCGACCACGAGCCTTGCCCCCGCCGACCTCAGCCGCGCCGCCACGGCCATTGCCCACCACTCACAGCCTCTCCTCCTCCGCCGTTGCCGCTCGCGCGGTGCAGTGGTGCGCGCGCGCGCGCTTCTTGACCGGTGTCGCGTGCGTGTGAGCCGATGGGGGCGCGGGAGTACTACGACTACCGGAGGGCCATCTACGGCGACATCACCCACAAGGCCATCCTCGTCGACGCCGCCGGGACGCTCCTCGCCCCCACCGAGCCCATGGCGCAGGTATACAGAACAATTGGCGAAAAGTATGGAGTCAACTACTCAGAGGATGAGATCTTGATGAGATACAGGAGGGCTTATGCGCAGCCATGGGGTAGATCGC-GGCTGAGGTATGTGGATGATGGTAGGCCCTTCTGGCAGCATATAGTTAGCTCTTCAACTGGATGCTCAGATTTACAGTACTTTGAGGAACTTTATCAGTACTATACAACTGCAAAGGCTTGGCAGCTCTGCGACCCTGACGCTAAATATGTTTTTGAAGCATTGAGAAAGGCTGGTGTAAAAACAGCTGTTGTATCCAACTTTGACACACGTC-TTCGGCCACTTTTACAGGCCCTGAATTGTGATCACTGGTTTGATGCAGTTGCTGTATCTGCTGAGGTTGCTGCGGAAAAGCCAAACCCAACAATATTCTTGAAGGCTTGCGAGTTTTTAGGTGTGAAGCCTGAAGAAGCTGTGCATATTGGTGATGACCGCAGGAATGATCTCTGGGGAGCCAGGGATGCAGGCTGTGATGCCTGGCTCTGGGGCAGTGATGTTTACTCTTTCAAGGAGGTCGCAGAAAGGATCGGAGTTAAGGTGTAAGGAGTCGTTCGTCCGCTGGGTCACCTGAAAT-AAGAAGGCCGGGAGGTGTTGCATTTTTGTACATAGCGGCAACCCTTGTTGCTCCACTGATGTACATATTTTTCCAGAGAATAACCGATGGCAGTGTAGTATATATCTGTATGACTGCATTTGCATTTGAGACTTTGAGCGCTCAATTTACGTTAAAAAAAAAA] [+] EMBL BI305208 [GCCGCCTCCGCCGTGGCCGTCCCCATCCACCTCCCCTCCCCACCACCACCACGTCCCACCGCCATCGCCGCCGGCCCGACCACGAGCCTTGCCCCCGCCGACCTCAGCCGCGCCGCCACGGCCATTGCCCACCACTCACAGCCTCTCCTCCTCCGCCGTTGCCGCTCGCGCGGTGCAGTGGTGCGCGCGCGCGCGCTTCTTGACCGGTGTCGCGTGCGTGTGAGCCGATGGGGGCGCGGGAGTACTACGACTACCGGAGGGCCATCTACGGCGACATCACCCACAAGGCCATCCTCGTCGACGCCGCCGGGACGCTCCTCGCCCCCACCGAGCCCATGGCGCAGGTATACAGAACAATTGGCGAAAAGTATGGAGTCAACTACTCAGAGGATGAGATCTTGATGAGATACAGGAGGGCTTATGCGCAGCCATGGGGTAGATCGC GGCTGAGGTATGTGGATGATGGTAGGCCCTTCTGGCAGCATATAGTTAGCGCTTCTACTGGATGCTCAGATTTACAGTACTTTGAGGAACTTTATCAGTACTATACAACTGCAAAGGCTTGGCAGCTCTGCGACCCTGACGCTAAATATGTTTTTGAAGCATTGAGAAAGGCTGGTGTAAAAACAGCTGTTGTATCCAACTTTGACACACGTC TTCGGCCACTTTTACAGGCCCTGAATTGTGATCACTGGTTTGATGCAGTTGCTGTATCTGCTGAGGTTGCTGCGGAAAAcc ] [+] EMBL BI305189 [ ACCACGTCCCACCGCCATCGCCGCCGGCCCGACCACGAGCGTTGCCCCCGCCGACCTCAGCCGCGCCGCCAGGGCCATTGCCCACCACTCACAGCCTCTCCTCCTCCGCCGTTGCCGCTCGCGCGGTGCAGTGGTGCGCGCGCGCGCGCTTCTTGACCGGTGTCGCGTGCGTGTGAGCCGATGGGGGCGCGGGAGTACTACGACTACCGGAGGGCCATCTACGGCGACATCACCCACAAGGCCATCCTCGTCGACGCCGTCGGGACGCTCCTCGCCCCCACCGAGCCCATGGCGCAGGTATACAGAACAATTGGCGAAAAGTATGGAGTCAACTACTCAGAGGATGAGATCTTGATGAGATACAGGAGGGCTTATGCGCAGCCATGGGGTAGATCGC GGCTGAGGTATGTGGATGATGGTAGGCCCTTCTGGCAGCATATAGa ] [+] EMBL OS0596A [ CCCACAAGGCCATCCTCGTCGACGCCGCCGGGACGCTCCTCGCCCCCACCGAGCCCATGGCGCAGGTATACAGAACAATTGGCGAAAAGTATGGAGTCAACTACTCAGAGGATGAGATCTTGATGAGATACAGGAGGGCTTATGCGCA NCATGGGGTAGATCGC GGCTGAGGTATGTGGATGATGGTAGGCCCTTCTGGCAGCATATAGTTAGCTCTTCAACTGGATGCTCAGATTTACAGTACTTTGAGGAACTTTATCAGTACTATACAACTGCAAAGGCTTGGCAGCTCTGCGACCCTGACGCTAAATATGTTTTTGAAGCATTGAGAAAGGCTGGTGTAAAAACAGCTGTTGTATCCANCTTTGACACACGTCTTTCGGCCACTTTTACAGGNCCTGAATTGTGATCACTGGTTTGATGCAGTTGCTGTATCTGCTGAGGTTGCTGCGG AAAGGCAAACCNNACAATATTNTNG AGGGTTGCGAG TTTTAGGTGT NAGGCTGAGGAg ] [+] EMBL AU091627 [ GGGTAGATCGCGGGNTAAGGTATGTGGATGATGGTAGGCCCTTCTGGCAGCATATAGTTAGCTCTTCAACTGNATGCTCAGATTTACAGTACTTTGAGGAACTTTATCAGTACTATACAACTGCAAAGGCTTGGCAGCTCTGCGACCCTGACGCTAAATATGTTTTTGAAGCATTGAGAAAGGCTGGTGTAAAAACAGCTGTTGTATCCAACTTTGACACACGTC TTCGGCCACTTTTACAGGCCCTGAATTGTGATCACTGGTTTGATGCAGTTGCTGTATCTGCTGAGGTTGCTGCGGAAAAGCCAAACCCAACAATATTCTTGAAGGCTTGCGAGTTTTTAGGTGTGAAGCCTGAAGAAGCTGTGCATATTGGTGATGACCGCAGGAATGATCTCTGGGGAGCCAGGGATGCAGGCTGTGATGCCTGGCTCTGGGGCAGTGATGTTTACTCTTTCAAGGAGGTCGCAGAAAGGATCGGAGTTAAGGTGTAAGGAGTCGTTCGTCCGCTGGGTCACCTGAAAT AAGAAGGCCGGGAGGTGTTGCATTTTTGTACATAGCGGCAACCCTTGTTGCTCCACTGATGTACATATTTTTCCAGAGAATAACCGATGGCAGTGTAGTATATATCTGTATGACTGCATTTGCATTTGAGACTTTGAGCGCTCAATTTACGTTAAAAAAAAAA] [+] EMBL AU174703 [ GGCTGGTGTAAAAACAGCTGTTGTATCCAACTTTGACACACGTC TTCGGCCACTTTTACAGGCCCTGAATTGTGATCACTGGTTTGATGCAGTTGCTGTATCTGCTGAGGTTGCTGCGGAAAAGCCAAACCCAACAATATTCTTGAAGGCTTGCGAGTTTTTAGGTGTGAAGCCTGAAGAAGCTGTGCATATTGGTGATGACCGCAGGAATGATCTCTGGGGAGCCAGGGATGCAGGCTGTGATGCCTGGCTCTGGGGCAGTGATGTTTACTCTTTCAAGGAGGTCGCAGAAAGGATCGGAGTTAAGGTGTAAGGAGTCGTTCGTCCGCTGGGTCACCTGAAATAAAGAAGGCCGGGAGGTGTTGCATTTTTGTACATANCGG ] consensusID : consensus_10515#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 323 fasta sequence [GAGGAGGAAGGGAAAAAGGGGAAGAAAAAGGGGGGGGAGAGGGGNNGGGGGGGANGNNGNNNNNNNNGGGGAAGNNCACCACCACCACGTCCCACCGCCATCGCCGCCGGCCCGACCACGAGCCTTGCCCCCGCCGACCTCAGCCGCGCCGCCACGGCCATTGCCCACCACTCACAGCCTCTCCTCCTCCGCCGTTGCCGCTCGCGCGGTGCAGTGGTGCGCGCGCGCGCGCTTCTTGACCGGTGTCGCGTGCGTGTGTGTGAAGGAGGAGTTTGAGTTTGTGTTCTTCGTTGGTTTATAGGAGGAGGAGGAGTGGTGAGTTG] [-] EMBL CA756999 [GAGGAGGAAGGGAAAAAGGGGAAGAAAAAGGGGGGGGAGAGGGGNNGGGGGGGANGNNGNNNNNNNNGGGGAAGNNCACCACCACCACGTCCCACCGCCATCGCCGCCGGCCCGACCACGAGCCTTGCCCCCGCCGACCTCAGCCGCGCCGCCACGGCCATTGCCCACCACTCACAGCCTCTCCTCCTCCGCCGTTGCCGCTCGCGCGGTGCAGTGGTGCGCGCGCGCGCGCTTCT ] [-] EMBL CB629446 [ tcccCACCACCACCACGTCCCACCGCCATCGCCGCCGGCCCGACCACGAGCCTTGCCCCCGCCGACCTCAGCCGCGCCGCCACGGCCATTGCCCACCACTCACAGCCTCTCCTCCTCCGCCGTTGCCGCTCGCGCGGTGCAGTGGTGCGCGCGCGCGCGCTTCTTGACCGGTGTCGCGTGCGTGTGTGTGAAGGAGGAGTTTGAGTTTGTGTTCTTCGTTGGTTTATAGGAGGAGGAGGAGTGGTGAGTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10515#0 ----------------------------------GCCGCCTCCGCCGTGGCCGTCCCCAT 26 consensus_10515#1 GAGGAGGAAGGGAAAAAGGGGAAGAAAAAGGGGGGGGAGAGGGGNNGGGGGGGANGNNGN 60 * * * ** * consensus_10515#0 CCACCTCCCCTC--CCCACCACCACCACGTCCCACCGCCATCGCCGCCGGCCCGACCACG 84 consensus_10515#1 NNNNNNNGGGGAAGNNCACCACCACCACGTCCCACCGCCATCGCCGCCGGCCCGACCACG 120 ******************************************** consensus_10515#0 AGCCTTGCCCCCGCCGACCTCAGCCGCGCCGCCACGGCCATTGCCCACCACTCACAGCCT 144 consensus_10515#1 AGCCTTGCCCCCGCCGACCTCAGCCGCGCCGCCACGGCCATTGCCCACCACTCACAGCCT 180 ************************************************************ consensus_10515#0 CTCCTCCTCCGCCGTTGCCGCTCGCGCGGTGCAGTGGTGCGCGCGCGCGCGCTTCTTGAC 204 consensus_10515#1 CTCCTCCTCCGCCGTTGCCGCTCGCGCGGTGCAGTGGTGCGCGCGCGCGCGCTTCTTGAC 240 ************************************************************ consensus_10515#0 CGGTGTCGCGTGCGTGTGAGCCGATGGGGGCGCGGGAGTACTACGACTACCGGAGGGCCA 264 consensus_10515#1 CGGTGTCGCGTGCGTGTGTGT-GAAGGAGGAGTTTGAGT-TTGTGTTCTTCGTTGGTTTA 298 ****************** * ** ** ** * **** * * ** ** * consensus_10515#0 TCTACGGCGACATCACCCACAAGGCCATCCTCGTCGACGCCGCCGGGACGCTCCTCGCCC 324 consensus_10515#1 TAGGAGGAGG-AGGAGTGGTGAGTTG---------------------------------- 323 * ** * * * ** consensus_10515#0 CCACCGAGCCCATGGCGCAGGTATACAGAACAATTGGCGAAAAGTATGGAGTCAACTACT 384 consensus_10515#1 ------------------------------------------------------------ consensus_10515#0 CAGAGGATGAGATCTTGATGAGATACAGGAGGGCTTATGCGCAGCCATGGGGTAGATCGC 444 consensus_10515#1 ------------------------------------------------------------ consensus_10515#0 GGCTGAGGTATGTGGATGATGGTAGGCCCTTCTGGCAGCATATAGTTAGCTCTTCAACTG 504 consensus_10515#1 ------------------------------------------------------------ consensus_10515#0 GATGCTCAGATTTACAGTACTTTGAGGAACTTTATCAGTACTATACAACTGCAAAGGCTT 564 consensus_10515#1 ------------------------------------------------------------ consensus_10515#0 GGCAGCTCTGCGACCCTGACGCTAAATATGTTTTTGAAGCATTGAGAAAGGCTGGTGTAA 624 consensus_10515#1 ------------------------------------------------------------ consensus_10515#0 AAACAGCTGTTGTATCCAACTTTGACACACGTCTTCGGCCACTTTTACAGGCCCTGAATT 684 consensus_10515#1 ------------------------------------------------------------ consensus_10515#0 GTGATCACTGGTTTGATGCAGTTGCTGTATCTGCTGAGGTTGCTGCGGAAAAGCCAAACC 744 consensus_10515#1 ------------------------------------------------------------ consensus_10515#0 CAACAATATTCTTGAAGGCTTGCGAGTTTTTAGGTGTGAAGCCTGAAGAAGCTGTGCATA 804 consensus_10515#1 ------------------------------------------------------------ consensus_10515#0 TTGGTGATGACCGCAGGAATGATCTCTGGGGAGCCAGGGATGCAGGCTGTGATGCCTGGC 864 consensus_10515#1 ------------------------------------------------------------ consensus_10515#0 TCTGGGGCAGTGATGTTTACTCTTTCAAGGAGGTCGCAGAAAGGATCGGAGTTAAGGTGT 924 consensus_10515#1 ------------------------------------------------------------ consensus_10515#0 AAGGAGTCGTTCGTCCGCTGGGTCACCTGAAATAAGAAGGCCGGGAGGTGTTGCATTTTT 984 consensus_10515#1 ------------------------------------------------------------ consensus_10515#0 GTACATAGCGGCAACCCTTGTTGCTCCACTGATGTACATATTTTTCCAGAGAATAACCGA 1044 consensus_10515#1 ------------------------------------------------------------ consensus_10515#0 TGGCAGTGTAGTATATATCTGTATGACTGCATTTGCATTTGAGACTTTGAGCGCTCAATT 1104 consensus_10515#1 ------------------------------------------------------------ consensus_10515#0 TACGTTAAAAAAAAAA 1120 consensus_10515#1 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||