These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10524#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 3076 fasta sequence [AATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGCATAGGGGAGCCGAAGGGAAACCGAGTCTTAATTGGGCGTTAAGTTGCAGGGTATAGACCCGAAACCCGGTGATCTAGCCATGGGCAGGTTGAAGGTTGGGTAACACTAACTGGAGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCTAGGGGGCCATCCCGGCTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAGAGGGAAACAACCCAGACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGATGTTGGCTTAGAAGCAGCCATCATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACAC-TATGTGTTGTTGGGTA-GGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAA-GGGTTCCTGTCCAACGTTAATCGGGGCA-GGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTAGGTTATCCGGGCGACGGTTGTCCCGGTTTAAGCGTGCAGGTGTGAAGACCAGGCAAATCCGGTCTTCTTTAACACTGAGGCGTGATGACGAGCCGCCACGGCGGTGAAGTAACTGATGCCCTGCTTCCAGGAAAAGCCTCTAAGCTCCAGGTAACACGAAATCGTACCCCAAACCGACACAGGTGGTCAGGTAGAGAATACCAAGGCGCTTGAGAGAACTCGGGTGAAAGAACTAGGCAAAATGGTGCCGTAACTTCGGGAGAAGGCACGCTGGCGCGTAGGTGAAGGGACTTGCTCCCGGAGCCGAGGCCAGTCGAAGATACCAGCTGGCTGCAACTGTTTATTAAAAACACAGCACTGTGCAATCACGAAAGTGGACGTATACGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGATGGGGTTATCCGCAAGGAGAAGCTCTTGATCGAAGCCCCGGTAAACGGCGGCCGTAACGATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCTCCACCCGAGACTCAGTGAAATTGAAATCGCTGTGAAGATGCAGTGTACCCGCGGCAAGACGGAAAGACCCCGTGAACCTTTACTATAGCTTGACACTGAACATTGAGCCTTGATGTGTAGGATAGGTGGGAGGCTTTGAAGCGCGGACGCCAGTCTGCGTGGAGCCAACCTTGAAATACCACCCTTTAATGTTTGATGTTCTAACGTAGGCCCGTAATCCGGGCTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCCAAAGCGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGAGTGACGGCTCGAGCAGGTGCGAAAGCAGGTCATAGTGATCCGGTGGTTCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGAAGTAGGTCCCAAGGGTACGGCTGTTCGCCGTTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCTGCCGTGGGCGCTGGAGAATTGAGGGGGGTTGCTCCTAGTACGAGAGGACCGGAGTGAACGCACCGCTGGTGTTCGGGTTGTCATGCCAATGGCACTGCCCGGTAGCTAAGTGCGGAAGAGATAAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGAGTTCTCCCTGACCCTTTAAGGGTCCTGAAGGGACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGACCCGTGAGGCTTAACCTATCAACGAAAAACTACGTGACAGCGTGACACAGGGGGTAGTTAATTACTAGTTATTCGCAGTGCGTGCGTGTGTGTGTGTGAGCGATCGATTGATCGAGATCGACATGGCGGTGATCAGGGGTGTCGTGGTGGTGGTGCTCGCGCTGGTGGTGGTGGCGGCGGCGGCGGCGGACGGTGCAGGGGAGTGCGGGGCGACGCCGCCGGACAAGATGGCGCTGAAGCTGGCGCCGTGCGCGTCGGCGGCCAAGGACCCCAAGTCGACGCCGTCGAGCGGGTGCTGCACGGCGGTGCACACCATCGGGAAGCAGAGCCCCAAGTGCCTCTGCGCCGTCATGCTGTCCAGCACGACCAGGAACGCGGGGATCAAGCCCGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATCGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACTCTGCCATGAGCAACAAAGAGTACTGCATGCAGTGCCGGTGCCGTGTCTGTCATCCGCTTAATTTATCGAGTTTATGTCGTGTTACTTACTAAAGCTGTATGCTGTTGTGCGTTCGTGCAGTTTAGTGTCAGTGTCAAACACCAAATAAAAGG-GTTCCATCTTCCGTGGGACTTCGTGATTTCAGTCCGTAGAGTTGTTTCTCCAAGTCCAGGATAGTGTGTACTTGATCATATTATCTCGGAGGGATGCTGAGACGCTCCCCTGAATTCTCTGAATAATAGTACAACTTGGTTTGT] [+] EMBL AK110485 [AATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGCATAGGGGAGCCGAAGGGAAACCGAGTCTTAATTGGGCGTTAAGTTGCAGGGTATAGACCCGAAACCCGGTGATCTAGCCATGGGCAGGTTGAAGGTTGGGTAACACTAACTGGAGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCTAGGGGGCCATCCCGGCTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAGAGGGAAACAACCCAGACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCACAGACAGCCAGGATGTTGGCTTAGAAGCAGCCATCATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTA GGGGAGCGTTCTGTAAGCCGCTGAAGGTGTGCTGTGAGGCACGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAA GGGTTCCTGTCCGACGTTAATCGGGGCA GGGTGAGTCGACCCCTAAGGCGAGGCTGAAAAGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTAGGTTATCCGGGCGACGGTTGTCCCGGTTTAAGCGTGCAGGTGTGAAGACCAGGCAAATCCGGTCTTCTTTAACACTGAGGCGTGATGACGAGCCGCCACGGCGGTGAAGTAACTGATGCCCTGCTTCCAGGAAAAGCCTCTAAGCTCCAGGTAACACGAAATCGTACCCCAAACCGACACAGGTGGTCAGGTAGAGAATACCAAGGCGCTTGAGAGAACTCGGGTGAAAGAACTAGGCAAAATGGTGCCGTAACTTCGGGAGAAGGCACGCTGGCGCGTAGGTGAAGGGACTTGCTCCCGGAGCCGAGGCCAGTCGAAGATACCAGCTGGCTGCAACTGTTTATTAAAAACACAGCACTGTGCAATCACGAAAGTGGACGTATACGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGATGGGGTTATCCGCAAGGAGAAGCTCTTGATCGAAGCCCCGGTAAACGGCGGCCGTAACGATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCTCCACCCGAGACTCAGTGAAATTGAAATCGCTGTGAAGATGCAGTGTACCCGCGGCAAGACGGAAAGACCCCGTGAACCTTTACTATAGCTTGACACTGAACATTGAGCCTTGATGTGTAGGATAGGTGGGAGGCTTTGAAGCGCGGACGCCAGTCTGCGTGGAGCCAACCTTGAAATACCACCCTTTAATGTTTGATGTTCTAACGTAGGCCCGTAATCCGGGCTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCCAAAGCGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGAGTGACGGCTCGAGCAGGTGCGAAAGCAGGTCATAGTGATCCGGTGGTTCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGAAGTAGGTCCCAAGGGTACGGCTGTTCGCCGTTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCTGCCGTGGGCGCTGGAGAATTGAGGGGGGTTGCTCCTAGTACGAGAGGACCGGAGTGAACGCACCGCTGGTGTTCGGGTTGTCATGCCAATGGCACTGCCCGGTAGCTAAGTGCGGAAGAGATAAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGAGTTCTCCCTGACCCTTTAAGGGTCCTGAAGGGACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGACCCGTGAGGCTTAACCTATCAACGAAAAACTACGTGACAGCGTGACACAGGGGGTAGTTAATTACTAGTTATTCGCAGTGCGTGCGTGTGTGTGTGTGAGCGATCGATTGATCGAGATCGACATGGCGGTGATCAGGGGTGTCGTGGTGGTGGTGCTCGCGCTGGTGGTGGTGGCGGCGGCGGCGGCGGACGGTGCAGGGGAGTGCGGGGCGACGCCGCCGGACAAGATGGCGCTGAAGCTGGCGCCGTGCGCGTCGGCGGCCAAGGACCCCAAGTCGACGCCGTCGAGCGGGTGCTGCACGGCGGTGCACACCATTGGGAAGCAGAGCCCCAAGTGCCTCTGCGCCGTCATGCTGTCCAGCACGACCAGGAACGCCGGGATCAAGCCCGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATCGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACTCTGCCATGAGCAACAAAGAGTACTGCATGCAGTGCCGGTGCCGTGTCTGTCATCCGCTTAATTTATCGAGTTTATGTCGTGTTACTTACTAAAGCTGTATGCTGTTGTGCGTTCGTGCAGTTTAGTGTCAGTGTCAAACACCAAATAAAAGG GTTCCATCTTCCGTGGGACTTCGTGATTTCAGTCCGTAGAGTTGTTTCTCCAAGTCCAGGATAGTGTGTACTTGATCATATTATCTCGGAGGGATGCTGAGACGCTCCCCTGAATTCTCTGAATAATAGTACAACTTGGTTTGT] [+] EMBL CF323734 [ AGAATGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAGAGGGAAACAACCCAGACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGATGTTGGCTTAGAAGCAGCCATCATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACAC TATGTGTTGTTGGGTA GGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAA GGGTTCCTGTCCAACGTTAATCGGGGCA GGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGG ] [+] EMBL CF324018 [ AGAATGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAGAGGGAAACAACCCAGACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGATGTTGGCTTAGAAGCAGCCATCATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACAC TATGTGTTGTTGGGTAGGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGGTTCCTGTCCAACGTTAATCGGGGCAGGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCC ] [+] EMBL CA756111 [ GACACAGGGGGTAGTTAATTACTAGTTATTCGCAGTGCATGCGTGTGTGTGTGTGAGCGATCGATTGATCGAGATCGACATGGCGGTGATCAGGGGTGTCGTGGTGGTGGTGCTCGCGCTGGTGGTGGTGGCGGCGGCGGCGGCGGACGGTGCAGGGGAGTGCGGGGCGACGCCGCCGGACAAGATGGCGCTGAAGCTGGCGCCGTGCGCGTCGGCGGCCAAGGACCCCAAGTCGACGCCGTCGAGCGGGTGCTGCACGGCGGTGCACACCATCGGGAAGCAGAGCCCCAAGTGCCTCTGCGCCGTCATGCTGTCCAGCACGACCAGGAACGCGGGGATCAAGCCCGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATCGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACTCTGCCATGAGCAACAAAGAGTACTGTATGCATCGCCTTTGCCGTGTCTGTCATCCGATTAATTTATCGAGCTTATGTCAGGGTACTTACTACAGCTGCATGCTGATGCGCGTTCGTGCGCTTTAGTGTCAGTGTCAAACA CAAATAAAAGGTGTT CATCTTGCGTGGGACTTCGAGATTTCAGTCCag ] [+] EMBL CB096438 [ GCGACGCCGCCGGACAAGATGGCGCTGAAGCTGGCGCCGTGCGCGTCGGCGGCCAAGGACCCCAAGTCGACGCCGTCGAGCGGGTGCTGCACGGCGGTGCACACCATCGGGAAGCAGAGCCCCAAGTGCCTCTGCGCCGTCATGCTGTCCAGCACGACCAGGAACGCGGGGATCAAGCCCGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATCGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACTCTGCCATGAGCAACAAAGAGTACTGCATGCAGTGCTGGTGCCGTGTCTGTCACCCGCTTAATTTATCGAGTTTATGTCGTGTTACTTACTAAAGCTGTATGCTGTTGTGCGTGCGTGCAGTTTAGTGTCAGTGTCAAACACCAAATAAAAGG GTTCCATCTTCCGTGGGACTTCGTGATTTCAGTCCGTAGAGTTGTTTCTCCAAGTCCAGGATAGTGTGTACTTGATCATATTATCTCGGAGGGATGCAGAGACGCTCCCCTGAATTCTCTGAATAATAGTACAACTTG ] consensusID : consensus_10524#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1546 fasta sequence [TGCGAAGGGGGGACGGAGAAGGCTATATCAGCCGGGCGACGGTTGTCCCGGTTTAAGCGTGTAGGTGTGTGTTCCAGGCAAATCCGGTTCACTTTACACTGAGGCGTGACGACGAGGCACTACGGTGCTGAAGTGATAAATGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACACAAAATCGTACCCCAAACCGACACAGGTGGTCAGGTAGAGAATACCCAGGCGCTTGAGAGAACTCGGGTGAAGGAACTAGGCAAAATGGTGCCGTAACTTCGGGAGAAGGCACGCTGTCGGTAGGTGAAACCCCTCGCGGGTGGAGCTGAAGGCAGTCGAAGATACCAGCTGGCTGCAACTGTTTATTAAAAACACAGCACTGTGCAAACACGAAAGTGGACGTATACGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGATGGGGTTATCCGCAAGGAGAAGCTCTTGATCGAAGCCCCGGTAAACGGCGGCCGTAACAATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCTCCACCCGAGACTCAGTGAAATTGAAATCGCTGTGAAGATGCAGTGTACCCGCGGCAAGACGGAAAGACCCCGTGAACCTTTACTACAGCTTGACACTGAACACTGAGCCTTGATGTGTAGGATAGGTGGGAGGCTTTGAAGCGTGGACGCCAGTCTGCGTGGAGCCGGCCTTGAAATACCACCCTTTAATGTTTGGTGTTCTAACGTAGGCCCGTGATCCGGGCTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCCAAAGCGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGAGTGACGGCTCGAGCAGGTGCGAAAGCAGGTCATAGTGATCCGGTGGTTCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGAAGTAGGTCCCAAGGGTACGGCTGTTCGCCGTTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCTGCCGTGGGCGCTGGAGAATTGAGGGGGGTTGCTCCTAGTACGAGAGGACCGGAGTGAACGCACCGCTGGTGTCCGGGTTGTCACGCCAGTGGCACTGCCCGGTAACTAAGTGCGGAAAAGATAAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGAGTTCTCCCTGAGCCTTTAAGGCTCCTGAAGGGACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTTACCGGTACTAATGACCCGTGAGGCTTAACCTGTTCAGATATTACCGTGGCAGTGTAATTGTATACGAGTCTATAATGTATATAGCT] [+] EMBL AK107373 [TGCGAAGGGGGGACGGAGAAGGCTATATCAGCCGGGCGACGGTTGTCCCGGTTTAAGCGTGTAGGTGTGTGTTCCAGGCAAATCCGGTTCACTTTACACTGAGGCGTGACGACGAGGCACTACGGTGCTGAAGTGATAAATGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACACAAAATCGTACCCCAAACCGACACAGGTGGTCAGGTAGAGAATACCCAGGCGCTTGAGAGAACTCGGGTGAAGGAACTAGGCAAAATGGTGCCGTAACTTCGGGAGAAGGCACGCTGTCGGTAGGTGAAACCCCTCGCGGGTGGAGCTGAAGGCAGTCGAAGATACCAGCTGGCTGCAACTGTTTATTAAAAACACAGCACTGTGCAAACACGAAAGTGGACGTATACGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGATGGGGTTATCCGCAAGGAGAAGCTCTTGATCGAAGCCCCGGTAAACGGCGGCCGTAACAATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCTCCACCCGAGACTCAGTGAAATTGAAATCGCTGTGAAGATGCAGTGTACCCGCGGCAAGACGGAAAGACCCCGTGAACCTTTACTACAGCTTGACACTGAACACTGAGCCTTGATGTGTAGGATAGGTGGGAGGCTTTGAAGCGTGGACGCCAGTCTGCGTGGAGCCGGCCTTGAAATACCACCCTTTAATGTTTGGTGTTCTAACGTAGGCCCGTGATCCGGGCTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCCAAAGCGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGAGTGACGGCTCGAGCAGGTGCGAAAGCAGGTCATAGTGATCCGGTGGTTCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGAAGTAGGTCCCAAGGGTACGGCTGTTCGCCGTTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCTGCCGTGGGCGCTGGAGAATTGAGGGGGGTTGCTCCTAGTACGAGAGGACCGGAGTGAACGCACCGCTGGTGTCCGGGTTGTCACGCCAGTGGCACTGCCCGGTAACTAAGTGCGGAAAAGATAAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGAGTTCTCCCTGAGCCTTTAAGGCTCCTGAAGGGACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTTACCGGTACTAATGACCCGTGAGGCTTAACCTGTTCAGATATTACCGTGGCAGTGTAATTGTATACGAGTCTATAATGTATATAGCT] consensusID : consensus_10524#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 440 fasta sequence [NGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGGTTTAAGCGTGTAGGCTGGTTTTCCAGGCAAATCCGGAAAATCAAGGCTGAGGCGTGATGACGAGGCACTACGGTGCTGAAGCAACAAATGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTCAGGTAGAGAATACCAAGGCGCTTGAGAGAACTCGGGTGAAGGAACTAGGCAAAATGGTGCCGTAACTTCGGGAGAAGGCACGCTTGATATGTAGGTGAAGCGACTTGCTCGTGGAGCTTGAAATCAGTCCGAGATACCAGTNGCTTCAACTNGTTTATTAAAAACACAGCACTGTGCAACACGN] [+] EMBL AU175101 [NGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGGTTTAAGCGTGTAGGCTGGTTTTCCAGGCAAATCCGGAAAATCAAGGCTGAGGCGTGATGACGAGGCACTACGGTGCTGAAGCAACAAATGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTCAGGTAGAGAATACCAAGGCGCTTGAGAGAACTCGGGTGAAGGAACTAGGCAAAATGGTGCCGTAACTTCGGGAGAAGGCACGCTTGATATGTAGGTGAAGCGACTTGCTCGTGGAGCTTGAAATCAGTCCGAGATACCAGTNGCTTCAACTNGTTTATTAAAAACACAGCACTGTGCAACACGN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10524#0 AATGGGTCAGCGACTTATATTCTGTAGCAAGGTTAACCGCATAGGGGAGCCGAAGGGAAA 60 consensus_10524#1 ------------------------------------------------------------ consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 CCGAGTCTTAATTGGGCGTTAAGTTGCAGGGTATAGACCCGAAACCCGGTGATCTAGCCA 120 consensus_10524#1 ------------------------------------------------------------ consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 TGGGCAGGTTGAAGGTTGGGTAACACTAACTGGAGGACCGAACCGACTAATGTTGAAAAA 180 consensus_10524#1 ------------------------------------------------------------ consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 TTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCT 240 consensus_10524#1 ------------------------------------------------------------ consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 CCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTC 300 consensus_10524#1 ------------------------------------------------------------ consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 GGCTAGGGGGCCATCCCGGCTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTA 360 consensus_10524#1 ------------------------------------------------------------ consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 TCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAGAGGGAAACAACCCAGACCG 420 consensus_10524#1 ------------------------------------------------------------ consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 CCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCC 480 consensus_10524#1 ------------------------------------------------------------ consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 AGGATGTTGGCTTAGAAGCAGCCATCATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGT 540 consensus_10524#1 ------------------------------------------------------------ consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 CGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACACT 600 consensus_10524#1 ------------------------------------------------------------ consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 ATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCT 660 consensus_10524#1 ------------------------------------------------------------ consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 GGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCT 720 consensus_10524#1 ------------------------------------------------------------ consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 CGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAA 780 consensus_10524#1 ------------------------------------------------------------ consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 GGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTTGGTGTTAC 840 consensus_10524#1 ------------------------------------------------------------ consensus_10524#2 ---------------NGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTTGGTGTTAC 45 consensus_10524#0 TGCGAAGGGGGGACGGAGAAGGCTAGGTTATCCGGGCGACGGTTGTCCCGGTTTAAGCGT 900 consensus_10524#1 TGCGAAGGGGGGACGGAGAAGGCTATATCAGCCGGGCGACGGTTGTCCCGGTTTAAGCGT 60 consensus_10524#2 TGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGGTTTAAGCGT 105 ************************* * ***************************** consensus_10524#0 GCAGGTGTGAAGACCAGGCAAATCCGGTCTTCTTTAACACTGAGGCGTGATGACGAGCCG 960 consensus_10524#1 GTAGGTGTGTGTTCCAGGCAAATCCGGTTCACTTTA-CACTGAGGCGTGACGACGAGGCA 119 consensus_10524#2 GTAGGCTGGTTTTCCAGGCAAATCCGG--AAAATCAAGGCTGAGGCGTGATGACGAGGCA 163 * *** * ************** * * *********** ****** * consensus_10524#0 CCACGGCGGTGAAGTAACTGATGCCCTGCTTCCAGGAAAAGCCTCTAAGCTCCAGGTAAC 1020 consensus_10524#1 CTACGGTGCTGAAGTGATAAATGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAAC 179 consensus_10524#2 CTACGGTGCTGAAGCAACAAATGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAAC 223 * **** * ***** * ****************************** ******** consensus_10524#0 ACGAAATCGTACCCCAAACCGACACAGGTGGTCAGGTAGAGAATACCAAGGCGCTTGAGA 1080 consensus_10524#1 ACAAAATCGTACCCCAAACCGACACAGGTGGTCAGGTAGAGAATACCCAGGCGCTTGAGA 239 consensus_10524#2 ATCAAATCGTACCCCAAACCGACACAGGTGGTCAGGTAGAGAATACCAAGGCGCTTGAGA 283 * ******************************************** ************ consensus_10524#0 GAACTCGGGTGAAAGAACTAGGCAAAATGGTGCCGTAACTTCGGGAGAAGGCACGCT-GG 1139 consensus_10524#1 GAACTCGGGTGAAGGAACTAGGCAAAATGGTGCCGTAACTTCGGGAGAAGGCACGCT-GT 298 consensus_10524#2 GAACTCGGGTGAAGGAACTAGGCAAAATGGTGCCGTAACTTCGGGAGAAGGCACGCTTGA 343 ************* ******************************************* * consensus_10524#0 CGCGTAGGTGAAGGGACTTGCTCCCGGAGCC-GAGGCCAGTCGAAGATACCAGCTGGCTG 1198 consensus_10524#1 CG-GTAGGTGAAACCCCTCGCGGGTGGAGCT-GAAGGCAGTCGAAGATACCAGCTGGCTG 356 consensus_10524#2 TATGTAGGTGAAGCGACTTGCTCGTGGAGCTTGAAATCAGTCCGAGATACCAGTNGCTTC 403 ********* ** ** ***** ** ***** ********* * * consensus_10524#0 CAACTGTTTATTAAAAACACAGCACTGTGCAATCACGAAAGTGGACGTATACGGTGTGAC 1258 consensus_10524#1 CAACTGTTTATTAAAAACACAGCACTGTGCAAACACGAAAGTGGACGTATACGGTGTGAC 416 consensus_10524#2 AACTNGTTTATTAAAAACACAGCACTGTGCAA-CACGN---------------------- 440 * *************************** **** consensus_10524#0 GCCTGCCCGGTGCCGGAAGGTTAATTGATGGGGTTATCCGCAAGGAGAAGCTCTTGATCG 1318 consensus_10524#1 GCCTGCCCGGTGCCGGAAGGTTAATTGATGGGGTTATCCGCAAGGAGAAGCTCTTGATCG 476 consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 AAGCCCCGGTAAACGGCGGCCGTAACGATAACGGTCCTAAGGTAGCGAAATTCCTTGTCG 1378 consensus_10524#1 AAGCCCCGGTAAACGGCGGCCGTAACAATAACGGTCCTAAGGTAGCGAAATTCCTTGTCG 536 consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 GGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCTCCACCCGAGACTC 1438 consensus_10524#1 GGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCTCCACCCGAGACTC 596 consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 AGTGAAATTGAAATCGCTGTGAAGATGCAGTGTACCCGCGGCAAGACGGAAAGACCCCGT 1498 consensus_10524#1 AGTGAAATTGAAATCGCTGTGAAGATGCAGTGTACCCGCGGCAAGACGGAAAGACCCCGT 656 consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 GAACCTTTACTATAGCTTGACACTGAACATTGAGCCTTGATGTGTAGGATAGGTGGGAGG 1558 consensus_10524#1 GAACCTTTACTACAGCTTGACACTGAACACTGAGCCTTGATGTGTAGGATAGGTGGGAGG 716 consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 CTTTGAAGCGCGGACGCCAGTCTGCGTGGAGCCAACCTTGAAATACCACCCTTTAATGTT 1618 consensus_10524#1 CTTTGAAGCGTGGACGCCAGTCTGCGTGGAGCCGGCCTTGAAATACCACCCTTTAATGTT 776 consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 TGATGTTCTAACGTAGGCCCGTAATCCGGGCTGCGGACAGTGTCTGGTGGGTAGTTTGAC 1678 consensus_10524#1 TGGTGTTCTAACGTAGGCCCGTGATCCGGGCTGCGGACAGTGTCTGGTGGGTAGTTTGAC 836 consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 TGGGGCGGTCTCCTCCCAAAGCGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGG 1738 consensus_10524#1 TGGGGCGGTCTCCTCCCAAAGCGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGG 896 consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 ACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGAGTGACGGCTCGAGC 1798 consensus_10524#1 ACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGAGTGACGGCTCGAGC 956 consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 AGGTGCGAAAGCAGGTCATAGTGATCCGGTGGTTCTGAATGGAAGGGCCATCGCTCAACG 1858 consensus_10524#1 AGGTGCGAAAGCAGGTCATAGTGATCCGGTGGTTCTGAATGGAAGGGCCATCGCTCAACG 1016 consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 GATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGG 1918 consensus_10524#1 GATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGG 1076 consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 TGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGAAGTAGGTCCCAAGGGTAC 1978 consensus_10524#1 TGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGAAGTAGGTCCCAAGGGTAC 1136 consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 GGCTGTTCGCCGTTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGG 2038 consensus_10524#1 GGCTGTTCGCCGTTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGG 1196 consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 TCCCTATCTGCCGTGGGCGCTGGAGAATTGAGGGGGGTTGCTCCTAGTACGAGAGGACCG 2098 consensus_10524#1 TCCCTATCTGCCGTGGGCGCTGGAGAATTGAGGGGGGTTGCTCCTAGTACGAGAGGACCG 1256 consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 GAGTGAACGCACCGCTGGTGTTCGGGTTGTCATGCCAATGGCACTGCCCGGTAGCTAAGT 2158 consensus_10524#1 GAGTGAACGCACCGCTGGTGTCCGGGTTGTCACGCCAGTGGCACTGCCCGGTAACTAAGT 1316 consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 GCGGAAGAGATAAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGAGTTCTCC 2218 consensus_10524#1 GCGGAAAAGATAAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGAGTTCTCC 1376 consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 CTGACCCTTTAAGGGTCCTGAAGGGACGTTGAAGACGACGACGTTGATAGGCCGGGTGTG 2278 consensus_10524#1 CTGAGCCTTTAAGGCTCCTGAAGGGACGTTGAAGACGACGACGTTGATAGGCCGGGTGTG 1436 consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 TAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGACCCGTGAGGCTTAACCTATCAA 2338 consensus_10524#1 TAAGCGCAGCGATGCGTTGAGCTTACCGGTACTAATGACCCGTGAGGCTTAACCTGTT-- 1494 consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 CGAAAAACTACGTGACAGCGTGAC---ACAGGGGGTAGTTAATTAC-TAGTTATTCGCAG 2394 consensus_10524#1 CAGATATTACCGTGGCAGTGTAATTGTATACGAGTCTATAATGTATATAGCT-------- 1546 consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 TGCGTGCGTGTGTGTGTGTGAGCGATCGATTGATCGAGATCGACATGGCGGTGATCAGGG 2454 consensus_10524#1 ------------------------------------------------------------ consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 GTGTCGTGGTGGTGGTGCTCGCGCTGGTGGTGGTGGCGGCGGCGGCGGCGGACGGTGCAG 2514 consensus_10524#1 ------------------------------------------------------------ consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 GGGAGTGCGGGGCGACGCCGCCGGACAAGATGGCGCTGAAGCTGGCGCCGTGCGCGTCGG 2574 consensus_10524#1 ------------------------------------------------------------ consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 CGGCCAAGGACCCCAAGTCGACGCCGTCGAGCGGGTGCTGCACGGCGGTGCACACCATCG 2634 consensus_10524#1 ------------------------------------------------------------ consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 GGAAGCAGAGCCCCAAGTGCCTCTGCGCCGTCATGCTGTCCAGCACGACCAGGAACGCGG 2694 consensus_10524#1 ------------------------------------------------------------ consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 GGATCAAGCCCGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATCGCCGACCGCCCCG 2754 consensus_10524#1 ------------------------------------------------------------ consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 TCGGCTACAAGTGCGGAGATTACACTCTGCCATGAGCAACAAAGAGTACTGCATGCAGTG 2814 consensus_10524#1 ------------------------------------------------------------ consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 CCGGTGCCGTGTCTGTCATCCGCTTAATTTATCGAGTTTATGTCGTGTTACTTACTAAAG 2874 consensus_10524#1 ------------------------------------------------------------ consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 CTGTATGCTGTTGTGCGTTCGTGCAGTTTAGTGTCAGTGTCAAACACCAAATAAAAGGGT 2934 consensus_10524#1 ------------------------------------------------------------ consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 TCCATCTTCCGTGGGACTTCGTGATTTCAGTCCGTAGAGTTGTTTCTCCAAGTCCAGGAT 2994 consensus_10524#1 ------------------------------------------------------------ consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 AGTGTGTACTTGATCATATTATCTCGGAGGGATGCTGAGACGCTCCCCTGAATTCTCTGA 3054 consensus_10524#1 ------------------------------------------------------------ consensus_10524#2 ------------------------------------------------------------ consensus_10524#0 ATAATAGTACAACTTGGTTTGT 3076 consensus_10524#1 ---------------------- consensus_10524#2 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||