These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10530#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1181 fasta sequence [CCTTAGCCCTCGAAGGCCTCGAGCCCTCCCCTACCTTGTTCTACCTCCTCCCATGGAGGTAGAACAAGTTCTATCTATCACCTCCAACCCCAAGGTAGACAGTATCACCAATGGCGACAATGTGATCATCATCCCTAGTGTGAGCACGGAGGAGAAGGAGCACATCAATGGAGCTGCAGAGACAAATCATGTTGTGATGATCACCGC-TGCTTCCATGGACAGAACCGACGGCGACGACAGGACGATGAAGGAGGAGGAGACGGACGGCATCGCCATCGCCAGGAGCGCCTCCTCCAACGGAAGCCGGCAGCAAGAC-AAGAAGCGGGGCGCG-TTCGGCCTCTTCCGGGCGATG-TTCATGTCCTTCAACGGCAGCGCCAGCA-TCAAGAAGAGGGCCGCCGCCGCCGCCGCCACCATGGGCT-ATCAGAAGAAGGCCGAGGCGGCCGGCGGCGGCGCGGCGGCTGACGTGGAGAGGTCGTCCAGCGACGTCGCGTCGTGGAAGAACCTCGTCGACGGCATGCGCCCGCTCCGCCTCCACGGCCACCTGGAGTACTACCCGCCGCCGTCGCCGGACAGGAGCGATGGCACGAGCATGACCAGCAGCTACTCGTCCGCCCAGGACCTGCAGGAGCTTGTCAATGGCCATGGAAAAGAAGACGAGGAAGAAGAAAAGAATTCTCTGGAGACGGAGGACGGTGGATGCAGCCCGAATCCGATCGACATGCAGGCCGAGGAGTTCATCGCGAAATTCTACGAGCAATTTAGGCTGCAAAAGTCGGACTCATTCAACAACCGAGCCTATTGATCGATCTCAGTGTTTTGATCTTGAAATTAGCATTCTTCTTCTCTTCCGATGTACATGGCGGATGGGGAGCAAGAAAAATCCATTGAAATGAAGTCATGAAGAAAAGTATATACCTCAATGTCGCGTCCATAATCACATTCGCTGTTTCTTCTCCATGTAATCTCCGTCCTTCAAAGAATTAATGGTATTCGCTAGATTTCAGATTCTTGAAAAGTACATAATAGAGTCGAGAAAACAGTGCGGTCAATTACATGTAAATTACTTTTTAGTTCTTACGTATTTGCTACACATCATTGTATGAACATAGGCAATAGGCCACCACATTGTTTGAATACTGAAATGGTGACGAATAAAGTACTGAAATTGGTATTATAAAAAA] [+] EMBL AK070629 [CCTTAGCCCTCGAGGGCCTCGAGCCCTCCCCTACCTTGTTCTACCTCCTCCCATGGAGGTAGAACAAGTTCTATCTATCACCTCCAACCCCAAGGTAGACAGTATCACCAATGGCGACAATGTGATCATCATCCCTAGTGTGAGCACGGAGGAGAAGGAGCACATCAATGGAGCTGCAGAGACAAATCATGTTGTGATGATCACCGC TGCTTCCATGGACAGAACCGACGGCGACGACAGGACGATGAAGGAGGAGGAGACGGACGGCATCGCAATCGCCAGGAGCGCCTCCTCCAACGGAAGCCGGCAGCAAGAC AAGAAGCGGGGCGCG TTCGGCCTCTTCCGGGCGATG TTCATGTCCTTCAACGGCAGCGCCAGCA TCAAGAAGAGGGCCGCCGCCGCCGCCGCCACCATGGGCT ATCAGAAGAAGGCCGAGGCGGCCGGCGGCGGCGCGGCGGCTGACGTGGAGAGGTCGTCCAGCGACGTCGCGTCGTGGAAGAACCTCGTCGACGGCATGCGCCCGCTCCGCCTCCACGGCCACCTGGAGTACTACCCGCCGCCGTCGCCGGACAGGAGCGATGGCACGAGCATGACCAGCAGCTACTCGTCCGCCCAGGACCTGCAGGAGCTTGTCAATGGCCATGGAAAAGAAGACGAGGAAGAAGAAAAGAATTCTCTGGAGACGGAGGACGGTGGATGCAGCCCGAATCCGATCGACATGCAGGCCGAGGAGTTCATCGCGAAATTCTACGAGCAATTTAGGCTGCAAAAGTCGGACTCATTCAACAACCGAGCCTATTGATCGATCTCAGTGTTTTGATCTTGAAATTAGCATTCTTCTTCTCTTCCGATGTACATGGCGGATGGGGAGCAAGAAAAATCCATTGAAATGAAGTCATGAAGAAAAGTATATACCTCAATGTCGCGTCCATAATCACATTCGCTGTTTCTTCTCCATGTAATCTCCGTCCTTCAAAGAATTAATGGTATTCGCTAGATTTCAGATT ] [+] EMBL AU064770 [ GCCCTCGAAGGCCTCGAGCCCTCCCCTACCTTGTTCTACCTCCTCCCATGGAGGTAGAACAAGTTCTATCTATCACCTCCAACCCCAAGGTAGACAGTATCACCAATGGCGACAATGTGATCATCATCCCTAGTGTGAGCACGGAGGAGAAGGAGCACATCAATGGAGCTGCAGAGACAAATCATGTTGTGATGATCACCGCTTGCTTCCATGGACAGAACCGACGGCGACGACAGGACGATGAAGGAGGAGGAGACGGACGGCATCGCCATCGCCAGGAGCG CTTCTTCAACGGAAGCCGGCAGCAAGACAAAGAAGCGGGGCGCGTTTCGGCTTTTTCCGGGCGATGTTTCATGTCCTTCAACGGCAGCGCCAGAATTCAAGAAGAGGGCCGCCGCCGCCGCNGCCAACATTGGTTNTTCAGAAGGAGGC ] [+] EMBL AU063795 [ GCCCTCGAAGGCCTCGAGCCCTCCCCTACNTTTTNCTACCTCCTCCCATGGAGGTAGAACAAGTTCTATCTATNACCTCCAACCCCAAGGTAGACAGTATCACCAATGGCGACANTATNATCATCATCCCTAGTGTGAGCACGGAGGAGAAGGAGCACATCANTGGAGCTGCAGAGACAAATCATGTTGTAATGATCACCGC TGCTTCCATGGACAGAACCGACGGCGACGACAGGACGATGAAGGAGGAGGAGACGGACGGCATCGNCATCGCCAGGAGCGCCTCCTCCAACGGANGCCGGCAGCAGGAC AAGAAGCGGGGCGCG TTCGGCCTCTTNCGGGCGATG TTCATGTCCT ] [+] EMBL C71773 [ TCGAAGGCCTCGAGCCCTCCCCTACCTTNTNCTACCTCCTCCCATGGAGGTAGAACAAGTTCTATCTATCACCTCCAACCCCAAGGTAGACAGTATCACCAATGGCGACAATGTGATCATNATCCCTANTGTGAGCACGGAGGAGAAGGAGCACATCANTGGAGCTGCAGAGACAAATCATGTTGTNATGATCACCGC TGCTTCCATGGACAGAACCGACGGCGACGACAGGACGATGAAGGAGGAGGAGACGGACGGCATCGCNATCGCC ] [+] EMBL C73407 [ TATCACCAATGGCGACAATGTNATCATNATCCCTAGTGTGAGCACGGNGGAGAAGGAGCACATCAATGGAGCTGCAGAGACAAATCATGTTGTGATGATCACCGC TGCTTCCATNGACAGAACCGTCGGCGACGACAGGACGATGAAGGAGGAGGAGACGGACGGCATCGNCATCGNCAGGAGCGCCTTCTACAACGNAAGCCGGCAGCAAGNC ANGAAGCGGGNCGCG T ] [+] EMBL C98486 [ nCCGATCGACATGCAGNCCGAGGAGTTCATCGCGAAATTCTACGNGCAATTTAGGCTGCAAAAGTCGGACTCATTCAACACCCGAGCCTATTGATCGATCTCAGTGTTTTGATCTTGAAATTAGCATTCTTCTTCTCTTCCGATGTACATGGCGGATGGGGAGCAAGAAAAATCCATTGAAATGAAGTCATGAAGAAAAGTATATACCTCAATGTCGCGTCCATAATCACATTCGCTGTTTCTTCTCCATGTAATCTCCGTCCTTCAAAGAATTAATGGTATTCGCTAGATTTCAGATTCTTGAAAAGTACATAATAGAGTCGAGAAAACAGTGCGGTCAATTACATGTAAATTACTTTTTAGTTCTTACGTATTTGCTACACATCATTGTATGAACATAGGCAATAGGCCACCACATTGTTTGAATACTGAAATGGTGACGAATAAAGTACTGAAATTGGTATTATAAAAAA] consensusID : consensus_10530#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 347 fasta sequence [GGTGGATGCAGCCCGAATCCGATCGACATGCAGGCCGAGGAGTTCATCGCGAAATTNTACGAGCAATTTAGGCTGCAAAAGTNGGACTCATTCAACAACCGAGCCTATTGATCGATCTCAGTGTTTTGATCTTGAAATTAGCATTNTTNTTNTCTTCCNAATGTACATGGNGGATGGGGAGCAANAAAAATCCATTGAAATGAAGTCATGAANAAAAGTATATACCTCAATGTGGGGTCCATAATCACATTCGCTGTTTNTTCTCCATGTAATCTCCGTCCTTCAAANAATTAATGGNATTCNGCTAGATTTCNGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU182556 [GGTGGATGCAGCCCGAATCCGATCGACATGCAGGCCGAGGAGTTCATCGCGAAATTNTACGAGCAATTTAGGCTGCAAAAGTNGGACTCATTCAACAACCGAGCCTATTGATCGATCTCAGTGTTTTGATCTTGAAATTAGCATTNTTNTTNTCTTCCNAATGTACATGGNGGATGGGGAGCAANAAAAATCCATTGAAATGAAGTCATGAANAAAAGTATATACCTCAATGTGGGGTCCATAATCACATTCGCTGTTTNTTCTCCATGTAATCTCCGTCCTTCAAANAATTAATGGNATTCNGCTAGATTTCNGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10530#0 CCTTAGCCCTCGAAGGCCTCGAGCCCTCCCCTACCTTGTTCTACCTCCTCCCATGGAGGT 60 consensus_10530#1 ------------------------------------------------------------ consensus_10530#0 AGAACAAGTTCTATCTATCACCTCCAACCCCAAGGTAGACAGTATCACCAATGGCGACAA 120 consensus_10530#1 ------------------------------------------------------------ consensus_10530#0 TGTGATCATCATCCCTAGTGTGAGCACGGAGGAGAAGGAGCACATCAATGGAGCTGCAGA 180 consensus_10530#1 ------------------------------------------------------------ consensus_10530#0 GACAAATCATGTTGTGATGATCACCGCTGCTTCCATGGACAGAACCGACGGCGACGACAG 240 consensus_10530#1 ------------------------------------------------------------ consensus_10530#0 GACGATGAAGGAGGAGGAGACGGACGGCATCGCCATCGCCAGGAGCGCCTCCTCCAACGG 300 consensus_10530#1 ------------------------------------------------------------ consensus_10530#0 AAGCCGGCAGCAAGACAAGAAGCGGGGCGCGTTCGGCCTCTTCCGGGCGATGTTCATGTC 360 consensus_10530#1 ------------------------------------------------------------ consensus_10530#0 CTTCAACGGCAGCGCCAGCATCAAGAAGAGGGCCGCCGCCGCCGCCGCCACCATGGGCTA 420 consensus_10530#1 ------------------------------------------------------------ consensus_10530#0 TCAGAAGAAGGCCGAGGCGGCCGGCGGCGGCGCGGCGGCTGACGTGGAGAGGTCGTCCAG 480 consensus_10530#1 ------------------------------------------------------------ consensus_10530#0 CGACGTCGCGTCGTGGAAGAACCTCGTCGACGGCATGCGCCCGCTCCGCCTCCACGGCCA 540 consensus_10530#1 ------------------------------------------------------------ consensus_10530#0 CCTGGAGTACTACCCGCCGCCGTCGCCGGACAGGAGCGATGGCACGAGCATGACCAGCAG 600 consensus_10530#1 ------------------------------------------------------------ consensus_10530#0 CTACTCGTCCGCCCAGGACCTGCAGGAGCTTGTCAATGGCCATGGAAAAGAAGACGAGGA 660 consensus_10530#1 ------------------------------------------------------------ consensus_10530#0 AGAAGAAAAGAATTCTCTGGAGACGGAGGACGGTGGATGCAGCCCGAATCCGATCGACAT 720 consensus_10530#1 -------------------------------GGTGGATGCAGCCCGAATCCGATCGACAT 29 ***************************** consensus_10530#0 GCAGGCCGAGGAGTTCATCGCGAAATTCTACGAGCAATTTAGGCTGCAAAAGTCGGACTC 780 consensus_10530#1 GCAGGCCGAGGAGTTCATCGCGAAATTNTACGAGCAATTTAGGCTGCAAAAGTNGGACTC 89 *************************** ************************* ****** consensus_10530#0 ATTCAACAACCGAGCCTATTGATCGATCTCAGTGTTTTGATCTTGAAATTAGCATTCTTC 840 consensus_10530#1 ATTCAACAACCGAGCCTATTGATCGATCTCAGTGTTTTGATCTTGAAATTAGCATTNTTN 149 ******************************************************** ** consensus_10530#0 TTCTCTTCCGA-TGTACATGGCGGATGGGGAGCAAGAAAAATCCATTGAAATGAAGTCAT 899 consensus_10530#1 TTNTCTTCCNAATGTACATGGNGGATGGGGAGCAANAAAAATCCATTGAAATGAAGTCAT 209 ** ****** * ********* ************* ************************ consensus_10530#0 GAAGAAAAGTATATACCTCAATGTCGCGTCCATAATCACATTCGCTGTTTCTTCTCCATG 959 consensus_10530#1 GAANAAAAGTATATACCTCAATGTGGGGTCCATAATCACATTCGCTGTTTNTTCTCCATG 269 *** ******************** * *********************** ********* consensus_10530#0 TAATCTCCGTCCTTCAAAGAATTAATGGTATTCG-CTAGATTTCAGATTCTTGAAAAGTA 1018 consensus_10530#1 TAATCTCCGTCCTTCAAANAATTAATGGNATTCNGCTAGATTTCNGATTAAAAAAAAAAA 329 ****************** ********* **** ********* **** **** * consensus_10530#0 CATAATAGAGTCGAGAAAACAGTGCGGTCAATTACATGTAAATTACTTTTTAGTTCTTAC 1078 consensus_10530#1 AAAAAAAAAAAAAAAAAA------------------------------------------ 347 * ** * * * *** consensus_10530#0 GTATTTGCTACACATCATTGTATGAACATAGGCAATAGGCCACCACATTGTTTGAATACT 1138 consensus_10530#1 ------------------------------------------------------------ consensus_10530#0 GAAATGGTGACGAATAAAGTACTGAAATTGGTATTATAAAAAA 1181 consensus_10530#1 ------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||