Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 10530 cluster # 10530       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10530#0 length = 1181 sequences # 6  
consensus_10530#1 length = 347 sequences # 1  

consensusID : consensus_10530#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1181
fasta sequence
                              [CCTTAGCCCTCGAAGGCCTCGAGCCCTCCCCTACCTTGTTCTACCTCCTCCCATGGAGGTAGAACAAGTTCTATCTATCACCTCCAACCCCAAGGTAGACAGTATCACCAATGGCGACAATGTGATCATCATCCCTAGTGTGAGCACGGAGGAGAAGGAGCACATCAATGGAGCTGCAGAGACAAATCATGTTGTGATGATCACCGC-TGCTTCCATGGACAGAACCGACGGCGACGACAGGACGATGAAGGAGGAGGAGACGGACGGCATCGCCATCGCCAGGAGCGCCTCCTCCAACGGAAGCCGGCAGCAAGAC-AAGAAGCGGGGCGCG-TTCGGCCTCTTCCGGGCGATG-TTCATGTCCTTCAACGGCAGCGCCAGCA-TCAAGAAGAGGGCCGCCGCCGCCGCCGCCACCATGGGCT-ATCAGAAGAAGGCCGAGGCGGCCGGCGGCGGCGCGGCGGCTGACGTGGAGAGGTCGTCCAGCGACGTCGCGTCGTGGAAGAACCTCGTCGACGGCATGCGCCCGCTCCGCCTCCACGGCCACCTGGAGTACTACCCGCCGCCGTCGCCGGACAGGAGCGATGGCACGAGCATGACCAGCAGCTACTCGTCCGCCCAGGACCTGCAGGAGCTTGTCAATGGCCATGGAAAAGAAGACGAGGAAGAAGAAAAGAATTCTCTGGAGACGGAGGACGGTGGATGCAGCCCGAATCCGATCGACATGCAGGCCGAGGAGTTCATCGCGAAATTCTACGAGCAATTTAGGCTGCAAAAGTCGGACTCATTCAACAACCGAGCCTATTGATCGATCTCAGTGTTTTGATCTTGAAATTAGCATTCTTCTTCTCTTCCGATGTACATGGCGGATGGGGAGCAAGAAAAATCCATTGAAATGAAGTCATGAAGAAAAGTATATACCTCAATGTCGCGTCCATAATCACATTCGCTGTTTCTTCTCCATGTAATCTCCGTCCTTCAAAGAATTAATGGTATTCGCTAGATTTCAGATTCTTGAAAAGTACATAATAGAGTCGAGAAAACAGTGCGGTCAATTACATGTAAATTACTTTTTAGTTCTTACGTATTTGCTACACATCATTGTATGAACATAGGCAATAGGCCACCACATTGTTTGAATACTGAAATGGTGACGAATAAAGTACTGAAATTGGTATTATAAAAAA]

[+] EMBL AK070629             [CCTTAGCCCTCGAGGGCCTCGAGCCCTCCCCTACCTTGTTCTACCTCCTCCCATGGAGGTAGAACAAGTTCTATCTATCACCTCCAACCCCAAGGTAGACAGTATCACCAATGGCGACAATGTGATCATCATCCCTAGTGTGAGCACGGAGGAGAAGGAGCACATCAATGGAGCTGCAGAGACAAATCATGTTGTGATGATCACCGC TGCTTCCATGGACAGAACCGACGGCGACGACAGGACGATGAAGGAGGAGGAGACGGACGGCATCGCAATCGCCAGGAGCGCCTCCTCCAACGGAAGCCGGCAGCAAGAC AAGAAGCGGGGCGCG TTCGGCCTCTTCCGGGCGATG TTCATGTCCTTCAACGGCAGCGCCAGCA TCAAGAAGAGGGCCGCCGCCGCCGCCGCCACCATGGGCT ATCAGAAGAAGGCCGAGGCGGCCGGCGGCGGCGCGGCGGCTGACGTGGAGAGGTCGTCCAGCGACGTCGCGTCGTGGAAGAACCTCGTCGACGGCATGCGCCCGCTCCGCCTCCACGGCCACCTGGAGTACTACCCGCCGCCGTCGCCGGACAGGAGCGATGGCACGAGCATGACCAGCAGCTACTCGTCCGCCCAGGACCTGCAGGAGCTTGTCAATGGCCATGGAAAAGAAGACGAGGAAGAAGAAAAGAATTCTCTGGAGACGGAGGACGGTGGATGCAGCCCGAATCCGATCGACATGCAGGCCGAGGAGTTCATCGCGAAATTCTACGAGCAATTTAGGCTGCAAAAGTCGGACTCATTCAACAACCGAGCCTATTGATCGATCTCAGTGTTTTGATCTTGAAATTAGCATTCTTCTTCTCTTCCGATGTACATGGCGGATGGGGAGCAAGAAAAATCCATTGAAATGAAGTCATGAAGAAAAGTATATACCTCAATGTCGCGTCCATAATCACATTCGCTGTTTCTTCTCCATGTAATCTCCGTCCTTCAAAGAATTAATGGTATTCGCTAGATTTCAGATT                                                                                                                                                                              ]
[+] EMBL AU064770             [     GCCCTCGAAGGCCTCGAGCCCTCCCCTACCTTGTTCTACCTCCTCCCATGGAGGTAGAACAAGTTCTATCTATCACCTCCAACCCCAAGGTAGACAGTATCACCAATGGCGACAATGTGATCATCATCCCTAGTGTGAGCACGGAGGAGAAGGAGCACATCAATGGAGCTGCAGAGACAAATCATGTTGTGATGATCACCGCTTGCTTCCATGGACAGAACCGACGGCGACGACAGGACGATGAAGGAGGAGGAGACGGACGGCATCGCCATCGCCAGGAGCG CTTCTTCAACGGAAGCCGGCAGCAAGACAAAGAAGCGGGGCGCGTTTCGGCTTTTTCCGGGCGATGTTTCATGTCCTTCAACGGCAGCGCCAGAATTCAAGAAGAGGGCCGCCGCCGCCGCNGCCAACATTGGTTNTTCAGAAGGAGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU063795             [     GCCCTCGAAGGCCTCGAGCCCTCCCCTACNTTTTNCTACCTCCTCCCATGGAGGTAGAACAAGTTCTATCTATNACCTCCAACCCCAAGGTAGACAGTATCACCAATGGCGACANTATNATCATCATCCCTAGTGTGAGCACGGAGGAGAAGGAGCACATCANTGGAGCTGCAGAGACAAATCATGTTGTAATGATCACCGC TGCTTCCATGGACAGAACCGACGGCGACGACAGGACGATGAAGGAGGAGGAGACGGACGGCATCGNCATCGCCAGGAGCGCCTCCTCCAACGGANGCCGGCAGCAGGAC AAGAAGCGGGGCGCG TTCGGCCTCTTNCGGGCGATG TTCATGTCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL C71773               [         TCGAAGGCCTCGAGCCCTCCCCTACCTTNTNCTACCTCCTCCCATGGAGGTAGAACAAGTTCTATCTATCACCTCCAACCCCAAGGTAGACAGTATCACCAATGGCGACAATGTGATCATNATCCCTANTGTGAGCACGGAGGAGAAGGAGCACATCANTGGAGCTGCAGAGACAAATCATGTTGTNATGATCACCGC TGCTTCCATGGACAGAACCGACGGCGACGACAGGACGATGAAGGAGGAGGAGACGGACGGCATCGCNATCGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL C73407               [                                                                                                      TATCACCAATGGCGACAATGTNATCATNATCCCTAGTGTGAGCACGGNGGAGAAGGAGCACATCAATGGAGCTGCAGAGACAAATCATGTTGTGATGATCACCGC TGCTTCCATNGACAGAACCGTCGGCGACGACAGGACGATGAAGGAGGAGGAGACGGACGGCATCGNCATCGNCAGGAGCGCCTTCTACAACGNAAGCCGGCAGCAAGNC ANGAAGCGGGNCGCG T                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL C98486               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          nCCGATCGACATGCAGNCCGAGGAGTTCATCGCGAAATTCTACGNGCAATTTAGGCTGCAAAAGTCGGACTCATTCAACACCCGAGCCTATTGATCGATCTCAGTGTTTTGATCTTGAAATTAGCATTCTTCTTCTCTTCCGATGTACATGGCGGATGGGGAGCAAGAAAAATCCATTGAAATGAAGTCATGAAGAAAAGTATATACCTCAATGTCGCGTCCATAATCACATTCGCTGTTTCTTCTCCATGTAATCTCCGTCCTTCAAAGAATTAATGGTATTCGCTAGATTTCAGATTCTTGAAAAGTACATAATAGAGTCGAGAAAACAGTGCGGTCAATTACATGTAAATTACTTTTTAGTTCTTACGTATTTGCTACACATCATTGTATGAACATAGGCAATAGGCCACCACATTGTTTGAATACTGAAATGGTGACGAATAAAGTACTGAAATTGGTATTATAAAAAA]


>consensus_10530#0 CCTTAGCCCTCGAAGGCCTCGAGCCCTCCCCTACCTTGTTCTACCTCCTCCCATGGAGGT AGAACAAGTTCTATCTATCACCTCCAACCCCAAGGTAGACAGTATCACCAATGGCGACAA TGTGATCATCATCCCTAGTGTGAGCACGGAGGAGAAGGAGCACATCAATGGAGCTGCAGA GACAAATCATGTTGTGATGATCACCGCTGCTTCCATGGACAGAACCGACGGCGACGACAG GACGATGAAGGAGGAGGAGACGGACGGCATCGCCATCGCCAGGAGCGCCTCCTCCAACGG AAGCCGGCAGCAAGACAAGAAGCGGGGCGCGTTCGGCCTCTTCCGGGCGATGTTCATGTC CTTCAACGGCAGCGCCAGCATCAAGAAGAGGGCCGCCGCCGCCGCCGCCACCATGGGCTA TCAGAAGAAGGCCGAGGCGGCCGGCGGCGGCGCGGCGGCTGACGTGGAGAGGTCGTCCAG CGACGTCGCGTCGTGGAAGAACCTCGTCGACGGCATGCGCCCGCTCCGCCTCCACGGCCA CCTGGAGTACTACCCGCCGCCGTCGCCGGACAGGAGCGATGGCACGAGCATGACCAGCAG CTACTCGTCCGCCCAGGACCTGCAGGAGCTTGTCAATGGCCATGGAAAAGAAGACGAGGA AGAAGAAAAGAATTCTCTGGAGACGGAGGACGGTGGATGCAGCCCGAATCCGATCGACAT GCAGGCCGAGGAGTTCATCGCGAAATTCTACGAGCAATTTAGGCTGCAAAAGTCGGACTC ATTCAACAACCGAGCCTATTGATCGATCTCAGTGTTTTGATCTTGAAATTAGCATTCTTC TTCTCTTCCGATGTACATGGCGGATGGGGAGCAAGAAAAATCCATTGAAATGAAGTCATG AAGAAAAGTATATACCTCAATGTCGCGTCCATAATCACATTCGCTGTTTCTTCTCCATGT AATCTCCGTCCTTCAAAGAATTAATGGTATTCGCTAGATTTCAGATTCTTGAAAAGTACA TAATAGAGTCGAGAAAACAGTGCGGTCAATTACATGTAAATTACTTTTTAGTTCTTACGT ATTTGCTACACATCATTGTATGAACATAGGCAATAGGCCACCACATTGTTTGAATACTGA AATGGTGACGAATAAAGTACTGAAATTGGTATTATAAAAAA



consensusID : consensus_10530#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 347
fasta sequence
                              [GGTGGATGCAGCCCGAATCCGATCGACATGCAGGCCGAGGAGTTCATCGCGAAATTNTACGAGCAATTTAGGCTGCAAAAGTNGGACTCATTCAACAACCGAGCCTATTGATCGATCTCAGTGTTTTGATCTTGAAATTAGCATTNTTNTTNTCTTCCNAATGTACATGGNGGATGGGGAGCAANAAAAATCCATTGAAATGAAGTCATGAANAAAAGTATATACCTCAATGTGGGGTCCATAATCACATTCGCTGTTTNTTCTCCATGTAATCTCCGTCCTTCAAANAATTAATGGNATTCNGCTAGATTTCNGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU182556             [GGTGGATGCAGCCCGAATCCGATCGACATGCAGGCCGAGGAGTTCATCGCGAAATTNTACGAGCAATTTAGGCTGCAAAAGTNGGACTCATTCAACAACCGAGCCTATTGATCGATCTCAGTGTTTTGATCTTGAAATTAGCATTNTTNTTNTCTTCCNAATGTACATGGNGGATGGGGAGCAANAAAAATCCATTGAAATGAAGTCATGAANAAAAGTATATACCTCAATGTGGGGTCCATAATCACATTCGCTGTTTNTTCTCCATGTAATCTCCGTCCTTCAAANAATTAATGGNATTCNGCTAGATTTCNGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_10530#1 GGTGGATGCAGCCCGAATCCGATCGACATGCAGGCCGAGGAGTTCATCGCGAAATTNTAC GAGCAATTTAGGCTGCAAAAGTNGGACTCATTCAACAACCGAGCCTATTGATCGATCTCA GTGTTTTGATCTTGAAATTAGCATTNTTNTTNTCTTCCNAATGTACATGGNGGATGGGGA GCAANAAAAATCCATTGAAATGAAGTCATGAANAAAAGTATATACCTCAATGTGGGGTCC ATAATCACATTCGCTGTTTNTTCTCCATGTAATCTCCGTCCTTCAAANAATTAATGGNAT TCNGCTAGATTTCNGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10530#0      CCTTAGCCCTCGAAGGCCTCGAGCCCTCCCCTACCTTGTTCTACCTCCTCCCATGGAGGT 60
consensus_10530#1      ------------------------------------------------------------
                                                                                   

consensus_10530#0      AGAACAAGTTCTATCTATCACCTCCAACCCCAAGGTAGACAGTATCACCAATGGCGACAA 120
consensus_10530#1      ------------------------------------------------------------
                                                                                   

consensus_10530#0      TGTGATCATCATCCCTAGTGTGAGCACGGAGGAGAAGGAGCACATCAATGGAGCTGCAGA 180
consensus_10530#1      ------------------------------------------------------------
                                                                                   

consensus_10530#0      GACAAATCATGTTGTGATGATCACCGCTGCTTCCATGGACAGAACCGACGGCGACGACAG 240
consensus_10530#1      ------------------------------------------------------------
                                                                                   

consensus_10530#0      GACGATGAAGGAGGAGGAGACGGACGGCATCGCCATCGCCAGGAGCGCCTCCTCCAACGG 300
consensus_10530#1      ------------------------------------------------------------
                                                                                   

consensus_10530#0      AAGCCGGCAGCAAGACAAGAAGCGGGGCGCGTTCGGCCTCTTCCGGGCGATGTTCATGTC 360
consensus_10530#1      ------------------------------------------------------------
                                                                                   

consensus_10530#0      CTTCAACGGCAGCGCCAGCATCAAGAAGAGGGCCGCCGCCGCCGCCGCCACCATGGGCTA 420
consensus_10530#1      ------------------------------------------------------------
                                                                                   

consensus_10530#0      TCAGAAGAAGGCCGAGGCGGCCGGCGGCGGCGCGGCGGCTGACGTGGAGAGGTCGTCCAG 480
consensus_10530#1      ------------------------------------------------------------
                                                                                   

consensus_10530#0      CGACGTCGCGTCGTGGAAGAACCTCGTCGACGGCATGCGCCCGCTCCGCCTCCACGGCCA 540
consensus_10530#1      ------------------------------------------------------------
                                                                                   

consensus_10530#0      CCTGGAGTACTACCCGCCGCCGTCGCCGGACAGGAGCGATGGCACGAGCATGACCAGCAG 600
consensus_10530#1      ------------------------------------------------------------
                                                                                   

consensus_10530#0      CTACTCGTCCGCCCAGGACCTGCAGGAGCTTGTCAATGGCCATGGAAAAGAAGACGAGGA 660
consensus_10530#1      ------------------------------------------------------------
                                                                                   

consensus_10530#0      AGAAGAAAAGAATTCTCTGGAGACGGAGGACGGTGGATGCAGCCCGAATCCGATCGACAT 720
consensus_10530#1      -------------------------------GGTGGATGCAGCCCGAATCCGATCGACAT 29
                                                      *****************************

consensus_10530#0      GCAGGCCGAGGAGTTCATCGCGAAATTCTACGAGCAATTTAGGCTGCAAAAGTCGGACTC 780
consensus_10530#1      GCAGGCCGAGGAGTTCATCGCGAAATTNTACGAGCAATTTAGGCTGCAAAAGTNGGACTC 89
                       *************************** ************************* ******

consensus_10530#0      ATTCAACAACCGAGCCTATTGATCGATCTCAGTGTTTTGATCTTGAAATTAGCATTCTTC 840
consensus_10530#1      ATTCAACAACCGAGCCTATTGATCGATCTCAGTGTTTTGATCTTGAAATTAGCATTNTTN 149
                       ******************************************************** ** 

consensus_10530#0      TTCTCTTCCGA-TGTACATGGCGGATGGGGAGCAAGAAAAATCCATTGAAATGAAGTCAT 899
consensus_10530#1      TTNTCTTCCNAATGTACATGGNGGATGGGGAGCAANAAAAATCCATTGAAATGAAGTCAT 209
                       ** ****** * ********* ************* ************************

consensus_10530#0      GAAGAAAAGTATATACCTCAATGTCGCGTCCATAATCACATTCGCTGTTTCTTCTCCATG 959
consensus_10530#1      GAANAAAAGTATATACCTCAATGTGGGGTCCATAATCACATTCGCTGTTTNTTCTCCATG 269
                       *** ******************** * *********************** *********

consensus_10530#0      TAATCTCCGTCCTTCAAAGAATTAATGGTATTCG-CTAGATTTCAGATTCTTGAAAAGTA 1018
consensus_10530#1      TAATCTCCGTCCTTCAAANAATTAATGGNATTCNGCTAGATTTCNGATTAAAAAAAAAAA 329
                       ****************** ********* ****  ********* ****    ****  *

consensus_10530#0      CATAATAGAGTCGAGAAAACAGTGCGGTCAATTACATGTAAATTACTTTTTAGTTCTTAC 1078
consensus_10530#1      AAAAAAAAAAAAAAAAAA------------------------------------------ 347
                        * ** * *    * ***                                          

consensus_10530#0      GTATTTGCTACACATCATTGTATGAACATAGGCAATAGGCCACCACATTGTTTGAATACT 1138
consensus_10530#1      ------------------------------------------------------------
                                                                                   

consensus_10530#0      GAAATGGTGACGAATAAAGTACTGAAATTGGTATTATAAAAAA 1181
consensus_10530#1      -------------------------------------------
                                                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)