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Oryza sativa
cluster # 10540 cluster # 10540       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10540#0 length = 2264 sequences # 6  
consensus_10540#1 length = 517 sequences # 1  

consensusID : consensus_10540#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 2264
fasta sequence
                              [TCTCGTAATAATAACACAATAGGAGGAGCAGAGAGGAGAGAGCCACTGCACCGCGCGTCCGCCCGCGCTCCCTCCCTCTCCTCTCCTCGCACTCGCCGTCCCTCCCAATGGCCTCCGCTGCCGCCCACGCGGCCACCGCCACCGCCGCCGCCGTCCTCCTCGTCGTCTTCCTCGCCCCCCTTGCCGCCGCCTCCGACTCCGACCACAAGTACCAATCGGAGGAGAAGGTTATGCTCTGGGTGAACAAGGTTGGCCCGTACAACAACCCACAGGAAACTTACAACTACTACAGCCTTCCGTTTTGCCATCCGTCCAATAACCCCGTGCATAAATGGGGAGGGCTTGGGGAGGTTCTCGGTGGAAATGAGCTGATTGACAGCCAGATCGACATAAAGTTTGGAAGGGATGTTGACAAGGGTACCATTTGTTCAATTGAACTTGATCCTGACAAGGCCAAACAGTTATCTGATGCGATTGAGAGTTCATATTGGTTTGAATTCTTCATTGATGATTTGCCTCTATGGGGTTTTGTTGGAGAGGCAGACAGAAATAGCGATAACAAATATTTCCTTTTCACTCACAAGAACATCGTCATCAGATACAATGGCAATCAGATTATTCATGTTAATCTTACTCAAGAAAGTCCAAAGCTTATTGATGCGGGTAAGGCATTGGATATGACATATTCTGTCAAGTGGGAACCAACCAATGTAACATTTGCTCACCGCTTTGATGTATACCTTGACTACCCTTTCTTTGAACACCAGATCCATTGGTTCTCAATCTTCAATTCTTTCATGATGGTTATCTTTCTCACTGGGCTAGTGTCAATGATTTTGATGCGCACTCTAAGAAATGACTATGCAAAGTATGCCCGCGACGATGATGATCTTGAAACTCTGGAAAGAGATGTCAGTGAAGAATCTGGATGGAAGCTTGTCCATGGGGATGTTTTCCGGCCTCCTCGCAGTTTGGCTCTTCTTTCAGCCCTTGTTGGTGTTGGCACACAGTTGTCTGCTCTTATTCTGCTAGTGATTTTGTTGGCAATCATCGGAATGCTGTATATTGGGCGAGGAGCTATTGTCACAACATTCATTGTTTGTTATGCCCTTACTTCATTCATCTCTGGATATGTCAGTGGTGCACTTTATTCACGGCATGGGGGGAAAAACTGGATCAAGGCAATGATTATGACAGCATCACTATTTCCGTTTATGTGCTTTGGAATTGGCCTAGTGCTTAACACAATCGCTATATTCTATCGATCATTAGCTGCCATACCATTTGGTACTATGGTGGTTGTGTTCATCCTGTGGGCCTTCATATCTTTCCCTCTTGCTCTTTTGGGAACTGTTGTTGGTAGAAACTGGAGTGGTGCCCCAAATAATCCATGCAGAGTAAAGACTATTCCTCGCCCTATCCCTGAGAAGAAATGGTACCTCACGCCTTCTGTCATTGCCCTCATGGGAGGACTGCTTCCTTTTGGTAGCATCTTCATTGAGATGTACTTTGTCTTCACATCATTTTGGAACTACAAGGTGTACTATGTATATGGGTTCATGTTGCTAGTCTTTTTGATCCTCATAATTGTCACCATCTGTGTAACAATCGTTGGTACATATTTCCTGCTGAATGCGGAGAACTACCACTGGCAGTGGACTTCATTCTTCTCTGCTGCTTCTACTGCCGTCTATGTTTACCTCTACTCCGTATATTATTACCATGTGAAGACCAAGA-TGTCAGGATTCTTTCAGACAAGTTTCTACTTCGGCTACACTCTTAT-GTTCTGCCTAGGTTTAGGAACACTCTGCGGTGCTGTCGGGTATCTTGGATCGACACTGTTTGTGAGAAGGATCTACAGGAACATAAAGTGTGACTAAAAATTGACCCCGGTTTAGACAGATGGGGCGAAAAACTTTGTATGTGTGGCTTGTTCCGTGAAGTGATCAGCCATGTTTTGGTGGCCAAGAAGCCAGGGCAGTTTATGGAGTACAAACGTTCTTCGGCGACATTGCTGGGAT-GCCATGGTTTTT-GTTTTCTTGTCCCTT-TTGT-TCTCTTTGATCCCCCTCTCGGTGCCACAATTTTCATGTTCAACTAGCCAT-ATATAGCTGCGATCATAGTTTAGATGTTAGTATATACCAGAGTTGTTATTCTTGAGCCTCATATCTGTGTTGCTTCACTTAAAGCTGTAAGATCCATGACATTTGTTGACCTTTAATGATGAAAACATCTCCGAAAGACATCATTTTCAGATTTTAAAAAAA]

[+] EMBL AK067736             [TCTCGTAATAATAACACAATAGGAGGAGCAGAGAGGAGAGAGCCACTGCACCGCGCGTCCGCCCGCGCTCCCTCCCTCTCCTCTCCTCGCACTCGCCGTCCCTCCCAATGGCCTCCGCTGCCGCCCACGCGGCCACCGCCACCGCCGCCGCCGTCCTCCTCGTCGTCTTCCTCGCCCCCCTTGCCGCCGCCTCCGACTCCGACCACAAGTACCAATCGGAGGAGAAGGTTATGCTCTGGGTGAACAAGGTTGGCCCGTACAACAACCCACAGGAAACTTACAACTACTACAGCCTTCCGTTTTGCCATCCGTCCAATAACCCCGTGCATAAATGGGGAGGGCTTGGGGAGGTTCTCGGTGGAAATGAGCTGATTGACAGCCAGATCGACATAAAGTTTGGAAGGGATGTTGACAAGGGTACCATTTGTTCAATTGAACTTGATCCTGACAAGGCCAAACAGTTATCTGATGCGATTGAGAGTTCATATTGGTTTGAATTCTTCATTGATGATTTGCCTCTATGGGGTTTTGTTGGAGAGGCAGACAGAAATAGCGATAACAAATATTTCCTTTTCACTCACAAGAACATCGTCATCAGATACAATGGCAATCAGATTATTCATGTTAATCTTACTCAAGAAAGTCCAAAGCTTATTGATGCGGGTAAGGCATTGGATATGACATATTCTGTCAAGTGGGAACCAACCAATGTAACATTTGCTCACCGCTTTGATGTATACCTTGACTACCCTTTCTTTGAACACCAGATCCATTGGTTCTCAATCTTCAATTCTTTCATGATGGTTATCTTTCTCACTGGGCTAGTGTCAATGATTTTGATGCGCACTCTAAGAAATGACTATGCAAAGTATGCCCGCGACGATGATGATCTTGAAACTCTGGAAAGAGATGTCAGTGAAGAATCTGGATGGAAGCTTGTCCATGGGGATGTTTTCCGGCCTCCTCGCAGTTTGGCTCTTCTTTCAGCCCTTGTTGGTGTTGGCACACAGTTGTCTGCTCTTATTCTGCTAGTGATTTTGTTGGCAATCATCGGAATGCTGTATATTGGGCGAGGAGCTATTGTCACAACATTCATTGTTTGTTATGCCCTTACTTCATTCATCTCTGGATATGTCAGTGGTGCACTTTATTCACGGCATGGGGGGAAAAACTGGATCAAGGCAATGATTATGACAGCATCACTATTTCCGTTTATGTGCTTTGGAATTGGCCTAGTGCTTAACACAATCGCTATATTCTATCGATCATTAGCTGCCATACCATTTGGTACTATGGTGGTTGTGTTCATCCTGTGGGCCTTCATATCTTTCCCTCTTGCTCTTTTGGGAACTGTTGTTGGTAGAAACTGGAGTGGTGCCCCAAATAATCCATGCAGAGTAAAGACTATTCCTCGCCCTATCCCTGAGAAGAAATGGTACCTCACGCCTTCTGTCATTGCCCTCATGGGAGGACTGCTTCCTTTTGGTAGCATCTTCATTGAGATGTACTTTGTCTTCACATCATTTTGGAACTACAAGGTGTACTATGTATATGGGTTCATGTTGCTAGTCTTTTTGATCCTCATAATTGTCACCATCTGTGTAACAATCGTTGGTACATATTTCCTGCTGAATGCGGAGAACTACCACTGGCAGTGGACTTCATTCTTCTCTGCTGCTTCTACTGCCGTCTATGTTTACCTCTACTCCGTATATTATTACCATGTGAAGACCAAGA TGTCAGGATTCTTTCAGACAAGTTTCTACTTCGGCTACACTCTTAT GTTCTGCCTAGGTTTAGGAACACTCTGCGGTGCTGTCGGGTATCTTGGATCGACACTGTTTGTGAGAAGGATCTACAGGAACATAAAGTGTGACTAAAAATTGACCCCGGTTTAGACAGATGGGGCGAAAAACTTTGTATGTGTGGCTTGTTCCGTGAAGTGATCAGCCATGTTTTGGTGGCCAAGAAGCCAGGGCAGTTTATGGAGTACAAACGTTCTTCGGCGACATTGCTGGGAT GCCATGGTTTTT GTTTTCTTGTCCCTT TTGT TCTCTTTGATCCCCCTCTCGGTGCCACAATTTTCATGTTCAACTAGCCAT ATATAGCTGCGATCATAGTTTAGATGTTAGTATATACCAGAGTTGTTATTCTTGAGCCTCATATCTGTGTTGCTTCACTTAAAGCTGTAAGATCCATGACATTTGTTGACCTTTAATGATGAAAACATCTCCGAAAGACATCAT                  ]
[+] EMBL AK099161             [                         GAGCAGAGAGGAGAGAGCCACTGCACCGCGCGTCCGCCCGCGCTCCCTCCCTCTCCTCTCCTCGCACTCGCCGTCCCTCCCAATGGCCTCCGCTGCCGCCCACGCGGCCACCGCCACCGCCGCCGCCGTCCTCCTCGTCGTCTTCCTCGCCCCCCTTGCCGCCGCCTCCGACTCCGACCACAAGTACCAATCGGAGGAGAAGGTTATGCTCTGGGTGAACAAGGTTGGCCCGTACAACAACCCACAGGAAACTTACAACTACTACAGCCTTCCGTTTTGCCATCCGTCCAATAACCCCGTGCATAAATGGGGAGGGCTTGGGGAGGTTCTCGGTGGAAATGAGCTGATTGACAGCCAGATCGACATAAAGTTTGGAAGGGATGTTGACAAGGGTACCATTTGTTCAATTGAACTTGATCCTGACAAGGCCAAACAGTTATCTGATGCGATTGAGAGTTCATATTGGTTTGAATTCTTCATTGATGATTTGCCTCTATGGGGTTTTGTTGGAGAGGCAGACAGAAATAGCGATAACAAATATTTCCTTTTCACTCACAAGAACATCGTCATCAGATACAATGGCAATCAGATTATTCATGTTAATCTTACTCAAGAAAGTCCAAAGCTTATTGATGCGGGTAAGGCATTGGATATGACATATTCTGTCAAGTGGGAACCAACCAATGTAACATTTGCTCACCGCTTTGATGTATACCTTGACTACCCTTTCTTTGAACACCAGATCCATTGGTTCTCAATCTTCAATTCTTTCATGATGGTTATCTTTCTCACTGGGCTAGTGTCAATGATTTTGATGCGCACTCTAAGAAATGACTATGCAAAGTATGCCCGCGACGATGATGATCTTGAAACTCTGGAAAGAGATGTCAGTGAAGAATCTGGATGGAAGCTTGTCCATGGGGATGTTTTCCGGCCTCCTCGCAGTTTGGCTCTTCTTTCAGCCCTTGTTGGTGTTGGCACACAGTTGTCTGCTCTTATTCTGCTAGTGATTTTGTTGGCAATCATCGGAATGCTGTATATTGGGCGAGGAGCTATTGTCACAACATTCATTGTTTGTTATGCCCTTACTTCATTCATCTCTGGATATGTCAGTGGTGCACTTTATTCACGGCATGGGGGGAAAAACTGGATCAAGGCAATGATTATGACAGCATCACTATTTCCGTTTATGTGCTTTGGAATTGGCCTAGTGCTTAACACAATCGCTATATTCTATCGATCATTAGCTGCCATACCATTTGGTACTATGGTGGTTGTGTTCATCCTGTGGGCCTTCATATCTTTCCCTCTTGCTCTTTTGGGAACTGTTGTTGGTAGAAACTGGAGTGGTGCCCCAAATAATCCATGCAGAGTAAAGACTATTCCTCGCCCTATCCCTGAGAAGAAATGGTACCTCACGCCTTCTGTCATTGCCCTCATGGGAGGACTGCTTCCTTTTGGTAGCATCTTCATTGAGATGTACTTTGTCTTCACATCATTTTGGAACTACAAGGTGTACTATGTATATGGGTTCATGTTGCTAGTCTTTTTGATCCTCATAATTGTCACCATCTGTGTAACAATCGTTGGTACATATTTCCTGCTGAATGCGGAGAACTACCACTGGCAGTGGACTTCATTCTTCTCTGCTGCTTCTACTGCCGTCTATGTTTACCTCTACTCCGTATATTATTACCATGTGAAGACCAAGA TGTCAGGATTCTTTCAGACAAGTTTCTACTTCGGCTACACTCTTAT GTTCTGCCTAGGTTTAGGAACACTCTGCGGTGCTGTCGGGTATCTTGGATCGACACTGTTTGTGAGAAGGATCTACAGGAACATAAAGTGTGACTAAAAATTGACCCCGGTTTAGACAGATGGGGCGAAAAACTTTGTATGTGTGGCTTGTTCCGTGAAGTGATCAGCCATGTTTTGGTGGCCAAGAAGCCAGGGCAGTTTATGGAGTACAAACGTTCTTCGGCGACATTGCTGGGAT GCCATGGTTTTT GTTTTCTTGTCCCTT TTGT TCTCTTTGATCCCCCTCTCGGTGCCACAATTTTCATGTTCAACTAGCCAT ATATAGCTGCGATCATAGTTTAGATGTTAGTATATACCAGAGTTGTTATTCTTGAGCCTCATATCTGTGTTGCTTCACTTAAAGCTGTAAGATCCATGACATTTGTTGACCTTTAATGATGAAAACATCTCCGAAAGACATCAT                  ]
[+] EMBL CB647297             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CAATGGCAATCAGATTATTCATGTTAATCTTACTCAAGAAAGTCCAAAGCTTATTGATGCGGGTAAGGCATTGGATATGACATATTCTGTCAAGTGGGAACCAACCAATGTAACATTTGCTCACCGCTTTGATGTATACCTTGACTACCCTTTCTTTGAACACCAGATCCATTGGTTCTCAATCTTCAATTCTTTCATGATGGTTATCTTTCTCACTGGGCTAGTGTCAATGATTTTGATGCGCACTCTAAGAAATGACTATGCAAAGTATGCCCGCGACGATGATGATCTTGAAACTCTGGAAAGAGATGTCAGTGAAGAATCTGGATGGAAGCTTGTCCATGGGGATGTTTTCCGGCCTCCTCGCAGTTTGGCTCTTCTTTCAGCCCTTGTTGGTGTTGGCACACAGTTGTCTGCTCTTATTCTGCTAGTGATTTTGTTGGCAATCATCGGAATGCTGTATATTGGGCGAGGAGCTATTGTCACAACATTCATTGTTTGTTATGCCCTTACTTCATTCATCTCTGGATATGTCAGTGGTGCACTTTATTCACGGCATGGGGGGAAAAACTGGATCAAGGCAATGATTATGACAGCATCACTATTTCCGTTTATGTGCTTTGGAATTGGCCTAGTGCTTAACACAATCGCTATATTCTATCGATCATTAGCTGCCATACCATTTGGTACTATGGTGGTTGTGTTCATCCTGTGGGCCTTCATATCTTTCCCTCTTGCTCTTTTGGGAACTGTTGTTGGTAAAAACTGGAGTGGTGCCCCAAATAATCCATGCAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CB647298             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AACTACAAGGTGTACTATGTATATGGGTTCATGTTGCTAGTCTTTTTGATCCTCATAATTGTCACCATCTGTGTAACAATCGTTGGTACATATTTCCTGCTGAATGCGGAGAACTACCACTGGCAGTGGACTTCATTCTTCTCTGCTGCTTCTACTGCCGTCTATGTTTACCTCTACTCCGTATATTATTACCATGTGAAGACCAAGA TGTCAGGATTCTTTCAGACAAGTTTCTACTTCGGCTACACTCTTAT GTTCTGCCTAGGTTTAGGAACACTCTGCGGTGCTGTCGGGTATCTTGGATCGACACTGTTTGTGAGAAGGATCTACAGGAACATAAAGTGTGACTAAAAATTGACCCCGGTTTAGACAGATGGGGCGAAAAACTTTGTATGTGTGGCTTGTTCCGTGAAGTGATCAGCCATGTTTTGGTGGCCAAGAAGCCAGGGCAGTTTATGGAGTACAAACGTTCTTCGGCGACATTGCTGGGAT GCCATGGTTTTT GTTTTCTTGTCCCTT TTGT TCTCTTTGATCCCCCTCTCGGTGCCACAATTTTCATGTTCAACTAGCCAT ATATAGCTGCGATCATAGTTTAGATGTTAGTATATACCAGAGTTGTTATTCTTGAGCCTCATATCTGTGTTGCTTCACTTAAAGCTGTAAGATCCATGACATTTGTTGACCTTTAATGAGGGAAACATCTCCGAAAGACATCATTTTCAGATTT        ]
[+] EMBL BM422098             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TATATTATNACCATGTGAAGACCAAGATTGTCAGGATTCTTTCAGACAAGTTTCTACTTCGGCTACACTCTTATGGTTCTGCCTAGGTTTAGGAACACTCTGCGGTGCTGTCGGGTATCTTGGATCGACACTGTTTGTGAGAAGGATCTACAGGAACATAAAGTGTGACTAAAAATTGACCCCGGTTTAGACAGATGGGGCGAAAAACTTTGTATGTGTGGCTTGTTCCGTGAAGTGATCAGCCATGTTTTGGTGGCCAAGAAGCCAGGGCAGTTTATGGAGTACAAACGTTCTTCGGCGACATTGCTGGGAT GCCATGGTTTTT GTTTTCTTGTCCCTT TTGT TCTCTTTGATCCCCCTCTCGGTGCCACAATTTTCATGTTCAACTAGCCAT ATATAGCTGCGATCATAGTTTAGATGTTAGTATATACCAGAGTTGTTATTCTTGAGCCTCATATCTGTGTTGCTTCACTTAAAGCTGTAAGATCCATGACATTTGTTGACGTTTAATGATGAAAACATCTCCGAAAGACATCATTTTCAGATTTTAAAAAAA]
[+] EMBL BM420690             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GTGTGGCTTGTTCCGTGAAGTGATCAGCCATGTTTTGGTGGCCAAGAAGCCAGGGCAGTTTATGGAGTACAAACGTTCTTCGGCGACATTGCTGGGATGGCCATGGTTTTTGGTTTTCTTGTCCCTTGTTGTGTCTCTTTGATCCCCCTCTCGGTGCCACAATTTTCATGTTCAACTAGCCATGATATAGCTGCGATCATAGTTTAGATGTTAGTATATACCAGAGTTGTTATTCTTGAGCCTCATATCTGTGTTGCTTCACTTAAAGCTGTAAGATCCATGACATTTGTTGACGTTTAATGATGAAAACATCTCCGAAAaaaaaaa                   ]


>consensus_10540#0 TCTCGTAATAATAACACAATAGGAGGAGCAGAGAGGAGAGAGCCACTGCACCGCGCGTCC GCCCGCGCTCCCTCCCTCTCCTCTCCTCGCACTCGCCGTCCCTCCCAATGGCCTCCGCTG CCGCCCACGCGGCCACCGCCACCGCCGCCGCCGTCCTCCTCGTCGTCTTCCTCGCCCCCC TTGCCGCCGCCTCCGACTCCGACCACAAGTACCAATCGGAGGAGAAGGTTATGCTCTGGG TGAACAAGGTTGGCCCGTACAACAACCCACAGGAAACTTACAACTACTACAGCCTTCCGT TTTGCCATCCGTCCAATAACCCCGTGCATAAATGGGGAGGGCTTGGGGAGGTTCTCGGTG GAAATGAGCTGATTGACAGCCAGATCGACATAAAGTTTGGAAGGGATGTTGACAAGGGTA CCATTTGTTCAATTGAACTTGATCCTGACAAGGCCAAACAGTTATCTGATGCGATTGAGA GTTCATATTGGTTTGAATTCTTCATTGATGATTTGCCTCTATGGGGTTTTGTTGGAGAGG CAGACAGAAATAGCGATAACAAATATTTCCTTTTCACTCACAAGAACATCGTCATCAGAT ACAATGGCAATCAGATTATTCATGTTAATCTTACTCAAGAAAGTCCAAAGCTTATTGATG CGGGTAAGGCATTGGATATGACATATTCTGTCAAGTGGGAACCAACCAATGTAACATTTG CTCACCGCTTTGATGTATACCTTGACTACCCTTTCTTTGAACACCAGATCCATTGGTTCT CAATCTTCAATTCTTTCATGATGGTTATCTTTCTCACTGGGCTAGTGTCAATGATTTTGA TGCGCACTCTAAGAAATGACTATGCAAAGTATGCCCGCGACGATGATGATCTTGAAACTC TGGAAAGAGATGTCAGTGAAGAATCTGGATGGAAGCTTGTCCATGGGGATGTTTTCCGGC CTCCTCGCAGTTTGGCTCTTCTTTCAGCCCTTGTTGGTGTTGGCACACAGTTGTCTGCTC TTATTCTGCTAGTGATTTTGTTGGCAATCATCGGAATGCTGTATATTGGGCGAGGAGCTA TTGTCACAACATTCATTGTTTGTTATGCCCTTACTTCATTCATCTCTGGATATGTCAGTG GTGCACTTTATTCACGGCATGGGGGGAAAAACTGGATCAAGGCAATGATTATGACAGCAT CACTATTTCCGTTTATGTGCTTTGGAATTGGCCTAGTGCTTAACACAATCGCTATATTCT ATCGATCATTAGCTGCCATACCATTTGGTACTATGGTGGTTGTGTTCATCCTGTGGGCCT TCATATCTTTCCCTCTTGCTCTTTTGGGAACTGTTGTTGGTAGAAACTGGAGTGGTGCCC CAAATAATCCATGCAGAGTAAAGACTATTCCTCGCCCTATCCCTGAGAAGAAATGGTACC TCACGCCTTCTGTCATTGCCCTCATGGGAGGACTGCTTCCTTTTGGTAGCATCTTCATTG AGATGTACTTTGTCTTCACATCATTTTGGAACTACAAGGTGTACTATGTATATGGGTTCA TGTTGCTAGTCTTTTTGATCCTCATAATTGTCACCATCTGTGTAACAATCGTTGGTACAT ATTTCCTGCTGAATGCGGAGAACTACCACTGGCAGTGGACTTCATTCTTCTCTGCTGCTT CTACTGCCGTCTATGTTTACCTCTACTCCGTATATTATTACCATGTGAAGACCAAGATGT CAGGATTCTTTCAGACAAGTTTCTACTTCGGCTACACTCTTATGTTCTGCCTAGGTTTAG GAACACTCTGCGGTGCTGTCGGGTATCTTGGATCGACACTGTTTGTGAGAAGGATCTACA GGAACATAAAGTGTGACTAAAAATTGACCCCGGTTTAGACAGATGGGGCGAAAAACTTTG TATGTGTGGCTTGTTCCGTGAAGTGATCAGCCATGTTTTGGTGGCCAAGAAGCCAGGGCA GTTTATGGAGTACAAACGTTCTTCGGCGACATTGCTGGGATGCCATGGTTTTTGTTTTCT TGTCCCTTTTGTTCTCTTTGATCCCCCTCTCGGTGCCACAATTTTCATGTTCAACTAGCC ATATATAGCTGCGATCATAGTTTAGATGTTAGTATATACCAGAGTTGTTATTCTTGAGCC TCATATCTGTGTTGCTTCACTTAAAGCTGTAAGATCCATGACATTTGTTGACCTTTAATG ATGAAAACATCTCCGAAAGACATCATTTTCAGATTTTAAAAAAA



consensusID : consensus_10540#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 517
fasta sequence
                              [AATCTGGATGGAAGCTTGTCCATGGGGATGTTTTCCGCCCTCCTCCAGTTTGGCTCTTCTTTCAGCCCTTGTTGTGTTGGCACACAGTTGTCTGCTCTTATTCTGCTAGTGATTTTGTTGCAATCATCGGAATGCTGTATATTGGGCGAGGAGCTATTGTCACAACATTCATTGTTTGTTATGCCCTTACTTCATTCATCTCTGGATATGTCAGTGGTGCACTTTATTCACGGCATGGGGGGAAAAACTGGATCAAGGCAATGATTATGACAGCATCACTATTTCCGTTTATGTGCTTTGGAATTGGCCTAGTGCTTAACACATCGCTATATTCTATCGATCATTAGCTGCCATACCACTTTGGTACTATGGTGGTTGTGTTCATCCTGTGGGCCTTCATATCTTTCCCTCTTGCTCTTTTGGGAACTATCTAGTTTGTGTTAACTGTGTGGTTGCCCATCTGTGTTTTTGATCGCAAGAAGAAAGCTCGTCTCGTTTGCTTTGATCAAAAAAAAAA]

[+] EMBL BI807671             [AATCTGGATGGAAGCTTGTCCATGGGGATGTTTTCCGCCCTCCTCCAGTTTGGCTCTTCTTTCAGCCCTTGTTGTGTTGGCACACAGTTGTCTGCTCTTATTCTGCTAGTGATTTTGTTGCAATCATCGGAATGCTGTATATTGGGCGAGGAGCTATTGTCACAACATTCATTGTTTGTTATGCCCTTACTTCATTCATCTCTGGATATGTCAGTGGTGCACTTTATTCACGGCATGGGGGGAAAAACTGGATCAAGGCAATGATTATGACAGCATCACTATTTCCGTTTATGTGCTTTGGAATTGGCCTAGTGCTTAACACATCGCTATATTCTATCGATCATTAGCTGCCATACCACTTTGGTACTATGGTGGTTGTGTTCATCCTGTGGGCCTTCATATCTTTCCCTCTTGCTCTTTTGGGAACTATCTAGTTTGTGTTAACTGTGTGGTTGCCCATCTGTGTTTTTGATCGCAAGAAGAAAGCTCGTCTCGTTTGCTTTGATCAAAAAAAAAA]


>consensus_10540#1 AATCTGGATGGAAGCTTGTCCATGGGGATGTTTTCCGCCCTCCTCCAGTTTGGCTCTTCT TTCAGCCCTTGTTGTGTTGGCACACAGTTGTCTGCTCTTATTCTGCTAGTGATTTTGTTG CAATCATCGGAATGCTGTATATTGGGCGAGGAGCTATTGTCACAACATTCATTGTTTGTT ATGCCCTTACTTCATTCATCTCTGGATATGTCAGTGGTGCACTTTATTCACGGCATGGGG GGAAAAACTGGATCAAGGCAATGATTATGACAGCATCACTATTTCCGTTTATGTGCTTTG GAATTGGCCTAGTGCTTAACACATCGCTATATTCTATCGATCATTAGCTGCCATACCACT TTGGTACTATGGTGGTTGTGTTCATCCTGTGGGCCTTCATATCTTTCCCTCTTGCTCTTT TGGGAACTATCTAGTTTGTGTTAACTGTGTGGTTGCCCATCTGTGTTTTTGATCGCAAGA AGAAAGCTCGTCTCGTTTGCTTTGATCAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10540#0      TCTCGTAATAATAACACAATAGGAGGAGCAGAGAGGAGAGAGCCACTGCACCGCGCGTCC 60
consensus_10540#1      ------------------------------------------------------------
                                                                                   

consensus_10540#0      GCCCGCGCTCCCTCCCTCTCCTCTCCTCGCACTCGCCGTCCCTCCCAATGGCCTCCGCTG 120
consensus_10540#1      ------------------------------------------------------------
                                                                                   

consensus_10540#0      CCGCCCACGCGGCCACCGCCACCGCCGCCGCCGTCCTCCTCGTCGTCTTCCTCGCCCCCC 180
consensus_10540#1      ------------------------------------------------------------
                                                                                   

consensus_10540#0      TTGCCGCCGCCTCCGACTCCGACCACAAGTACCAATCGGAGGAGAAGGTTATGCTCTGGG 240
consensus_10540#1      ------------------------------------------------------------
                                                                                   

consensus_10540#0      TGAACAAGGTTGGCCCGTACAACAACCCACAGGAAACTTACAACTACTACAGCCTTCCGT 300
consensus_10540#1      ------------------------------------------------------------
                                                                                   

consensus_10540#0      TTTGCCATCCGTCCAATAACCCCGTGCATAAATGGGGAGGGCTTGGGGAGGTTCTCGGTG 360
consensus_10540#1      ------------------------------------------------------------
                                                                                   

consensus_10540#0      GAAATGAGCTGATTGACAGCCAGATCGACATAAAGTTTGGAAGGGATGTTGACAAGGGTA 420
consensus_10540#1      ------------------------------------------------------------
                                                                                   

consensus_10540#0      CCATTTGTTCAATTGAACTTGATCCTGACAAGGCCAAACAGTTATCTGATGCGATTGAGA 480
consensus_10540#1      ------------------------------------------------------------
                                                                                   

consensus_10540#0      GTTCATATTGGTTTGAATTCTTCATTGATGATTTGCCTCTATGGGGTTTTGTTGGAGAGG 540
consensus_10540#1      ------------------------------------------------------------
                                                                                   

consensus_10540#0      CAGACAGAAATAGCGATAACAAATATTTCCTTTTCACTCACAAGAACATCGTCATCAGAT 600
consensus_10540#1      ------------------------------------------------------------
                                                                                   

consensus_10540#0      ACAATGGCAATCAGATTATTCATGTTAATCTTACTCAAGAAAGTCCAAAGCTTATTGATG 660
consensus_10540#1      ------------------------------------------------------------
                                                                                   

consensus_10540#0      CGGGTAAGGCATTGGATATGACATATTCTGTCAAGTGGGAACCAACCAATGTAACATTTG 720
consensus_10540#1      ------------------------------------------------------------
                                                                                   

consensus_10540#0      CTCACCGCTTTGATGTATACCTTGACTACCCTTTCTTTGAACACCAGATCCATTGGTTCT 780
consensus_10540#1      ------------------------------------------------------------
                                                                                   

consensus_10540#0      CAATCTTCAATTCTTTCATGATGGTTATCTTTCTCACTGGGCTAGTGTCAATGATTTTGA 840
consensus_10540#1      ------------------------------------------------------------
                                                                                   

consensus_10540#0      TGCGCACTCTAAGAAATGACTATGCAAAGTATGCCCGCGACGATGATGATCTTGAAACTC 900
consensus_10540#1      ------------------------------------------------------------
                                                                                   

consensus_10540#0      TGGAAAGAGATGTCAGTGAAGAATCTGGATGGAAGCTTGTCCATGGGGATGTTTTCCGGC 960
consensus_10540#1      ---------------------AATCTGGATGGAAGCTTGTCCATGGGGATGTTTTCCGCC 39
                                            ************************************* *

consensus_10540#0      CTCCTCGCAGTTTGGCTCTTCTTTCAGCCCTTGTTGGTGTTGGCACACAGTTGTCTGCTC 1020
consensus_10540#1      CTCCTC-CAGTTTGGCTCTTCTTTCAGCCCTTGTTG-TGTTGGCACACAGTTGTCTGCTC 97
                       ****** ***************************** ***********************

consensus_10540#0      TTATTCTGCTAGTGATTTTGTTGGCAATCATCGGAATGCTGTATATTGGGCGAGGAGCTA 1080
consensus_10540#1      TTATTCTGCTAGTGATTTTGTTG-CAATCATCGGAATGCTGTATATTGGGCGAGGAGCTA 156
                       *********************** ************************************

consensus_10540#0      TTGTCACAACATTCATTGTTTGTTATGCCCTTACTTCATTCATCTCTGGATATGTCAGTG 1140
consensus_10540#1      TTGTCACAACATTCATTGTTTGTTATGCCCTTACTTCATTCATCTCTGGATATGTCAGTG 216
                       ************************************************************

consensus_10540#0      GTGCACTTTATTCACGGCATGGGGGGAAAAACTGGATCAAGGCAATGATTATGACAGCAT 1200
consensus_10540#1      GTGCACTTTATTCACGGCATGGGGGGAAAAACTGGATCAAGGCAATGATTATGACAGCAT 276
                       ************************************************************

consensus_10540#0      CACTATTTCCGTTTATGTGCTTTGGAATTGGCCTAGTGCTTAACACAATCGCTATATTCT 1260
consensus_10540#1      CACTATTTCCGTTTATGTGCTTTGGAATTGGCCTAGTGCTTAACACA-TCGCTATATTCT 335
                       *********************************************** ************

consensus_10540#0      ATCGATCATTAGCTGCCATACCA-TTTGGTACTATGGTGGTTGTGTTCATCCTGTGGGCC 1319
consensus_10540#1      ATCGATCATTAGCTGCCATACCACTTTGGTACTATGGTGGTTGTGTTCATCCTGTGGGCC 395
                       *********************** ************************************

consensus_10540#0      TTCATATCTTTCCCTCTTGCTCTTTTGGGAACTGTT--GTTGGTAGAAACTGGAGTGGTG 1377
consensus_10540#1      TTCATATCTTTCCCTCTTGCTCTTTTGGGAACTATCTAGTTTGTGTTAACTGTGTGGTTG 455
                       ********************************* *   *** **   *****    * **

consensus_10540#0      CCC-CAAATAATCCATGCAGAGTAAAGACTATTCCTCGCCCTATCCCTGAGAAGAAATGG 1436
consensus_10540#1      CCCATCTGTGTTTTTGATCGCAAGAAGAAAGCTCGTCTCGTTTGCTTTGATCAAAAAAAA 515
                       ***     *  *       *    ****    ** ** *  *  *  ***  * ***   

consensus_10540#0      TACCTCACGCCTTCTGTCATTGCCCTCATGGGAGGACTGCTTCCTTTTGGTAGCATCTTC 1496
consensus_10540#1      AA---------------------------------------------------------- 517
                        *                                                          

consensus_10540#0      ATTGAGATGTACTTTGTCTTCACATCATTTTGGAACTACAAGGTGTACTATGTATATGGG 1556
consensus_10540#1      ------------------------------------------------------------
                                                                                   

consensus_10540#0      TTCATGTTGCTAGTCTTTTTGATCCTCATAATTGTCACCATCTGTGTAACAATCGTTGGT 1616
consensus_10540#1      ------------------------------------------------------------
                                                                                   

consensus_10540#0      ACATATTTCCTGCTGAATGCGGAGAACTACCACTGGCAGTGGACTTCATTCTTCTCTGCT 1676
consensus_10540#1      ------------------------------------------------------------
                                                                                   

consensus_10540#0      GCTTCTACTGCCGTCTATGTTTACCTCTACTCCGTATATTATTACCATGTGAAGACCAAG 1736
consensus_10540#1      ------------------------------------------------------------
                                                                                   

consensus_10540#0      ATGTCAGGATTCTTTCAGACAAGTTTCTACTTCGGCTACACTCTTATGTTCTGCCTAGGT 1796
consensus_10540#1      ------------------------------------------------------------
                                                                                   

consensus_10540#0      TTAGGAACACTCTGCGGTGCTGTCGGGTATCTTGGATCGACACTGTTTGTGAGAAGGATC 1856
consensus_10540#1      ------------------------------------------------------------
                                                                                   

consensus_10540#0      TACAGGAACATAAAGTGTGACTAAAAATTGACCCCGGTTTAGACAGATGGGGCGAAAAAC 1916
consensus_10540#1      ------------------------------------------------------------
                                                                                   

consensus_10540#0      TTTGTATGTGTGGCTTGTTCCGTGAAGTGATCAGCCATGTTTTGGTGGCCAAGAAGCCAG 1976
consensus_10540#1      ------------------------------------------------------------
                                                                                   

consensus_10540#0      GGCAGTTTATGGAGTACAAACGTTCTTCGGCGACATTGCTGGGATGCCATGGTTTTTGTT 2036
consensus_10540#1      ------------------------------------------------------------
                                                                                   

consensus_10540#0      TTCTTGTCCCTTTTGTTCTCTTTGATCCCCCTCTCGGTGCCACAATTTTCATGTTCAACT 2096
consensus_10540#1      ------------------------------------------------------------
                                                                                   

consensus_10540#0      AGCCATATATAGCTGCGATCATAGTTTAGATGTTAGTATATACCAGAGTTGTTATTCTTG 2156
consensus_10540#1      ------------------------------------------------------------
                                                                                   

consensus_10540#0      AGCCTCATATCTGTGTTGCTTCACTTAAAGCTGTAAGATCCATGACATTTGTTGACCTTT 2216
consensus_10540#1      ------------------------------------------------------------
                                                                                   

consensus_10540#0      AATGATGAAAACATCTCCGAAAGACATCATTTTCAGATTTTAAAAAAA 2264
consensus_10540#1      ------------------------------------------------
                                                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)