|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10542#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1167 fasta sequence
[CCCTAACCCGCGATCCGCCTCCGCCGCCGCCACCACCACCACCCACCCGGATCCCCACCTCCCTCCCCGATCTCACCACCTCCGTATAAAGGCGGCTCGGTTTGAAAAATCTTTGCCTCCGGAGGAGGAGGGGGGGATGGCTGCCGCGGCGGTGGATCCGATGGCGCTGGGGCTGGGGACGAGCGGAGGAGGAGGAGGAGGCGAGTCGGCGGTGGGGGGTGATGGGGCGGAGCCGGTG-GATCTCGTCGAGCACCCCTCCGGGATCGTCCCCACCCTCCAGAACATTGTTTCGACAGTAAATCTGGACTGCAGGTTGGATCTGAAAAAAATCGCTCTACAGGCTCGTAATGCAGAGTACAACCCAAAGCGTTTTGCTGCAGTTATCATGAGGATAAGGGACCCAAAGACAACAGCCCTGATATTTGCTTCGGGAAAGATGGTTTGCACTGGAGCAAAGAGCGAAGACCATTCAAAGCTTGCTGCGAGGAAGTATGCGCGAATCGTCCAAAAGCTTGGCTTCCCAGCAAAGTTCAAGGATTTCAAGATCCAGAACATTGTTGGTTCATGTGATGTCAAATTTCCTATTCGCCTGGAGGGCCATGCTTATTCTCATGGCGCATTCTCTAGTTATGAGCCAGAGCTCTTCCCTGGGCTGATTTACCGGATGAAGCAGCCAAAGATTGTGCTTCTCATTTTTGTCTCTGGCAAGATTGTTCTCACTGGAGCTAAGTACCGCAAAGAGATTTACGCTGCCTTTGAGAACATGTTCCCGGTGCTCACTGAATACAGGAAAACTCAGCAGCGCTGAGGGAATGATTTGTCGACAGAATGGGGAGTTCGCTGCCGCTGTACATACCATCTTAAGGACCTGGCTGCCAAGATTTTGAGACATGCACCTGGCGTCATTCCTTTTTCTTTCCTTTGTTCTTCGTAGCAGTAGGGTAGGAGAGCAACTGCGTAAAGGAGAGTATGTAAACAAGTTGATCAAAGTATTCTTTTGATAAACTAATGCTGACATGCAAGAAATGCATCCTGACTTGAGATCATGTGTTGTGTGCCTGCGTTCTGAATTGTAAAGTACAGTTTGATTGTGAGAGAAGTGGTACTCCATACGAAGTATGGAAAATATCACATTCTTCTCTCTCCATGCAAAGCAAGATTCAGCTA]
[+] EMBL AK108240 [CCCTAACCCGCGATCCGCCTCCGCCGCCGCCACCACCACCACCCACCCGGATCCCCACCTCCCTCCCCGATCTCACCACCTCCGTATAAAGGCGGCTCGGTTTGAAAAATCTTTGCCTCCGGAGGAGGAGGGGGGGATGGCTGCCGCGGCGGTGGATCCGATGGCGCTGGGGCTGGGGACGAGCGGAGGAGGAGGAGGAGGCGAGTCGGCGGTGGGGGGTGATGGGGCGGAGCCGGTG GATCTCGTCGAGCACCCCTCCGGGATCGTCCCCACCCTCCAGAACATTGTTTCGACAGTAAATCTGGACTGCAGGTTGGATCTGAAAAAAATCGCTCTACAGGCTCGTAATGCAGAGTACAACCCAAAGCGTTTTGCTGCAGTTATCATGAGGATAAGGGACCCAAAGACAACAGCCCTGATATTTGCTTCGGGAAAGATGGTTTGCACTGGAGCAAAGAGCGAAGACCATTCAAAGCTTGCTGCGAGGAAGTATGCGCGAATCGTCCAAAAGCTTGGCTTCCCAGCAAAGTTCAAGGATTTCAAGATCCAGAACATTGTTGGTTCATGTGATGTCAAATTTCCTATTCGCCTGGAGGGCCATGCTTATTCTCATGGCGCATTCTCTAGTTATGAGCCAGAGCTCTTCCCTGGGCTGATTTACCGGATGAAGCAGCCAAAGATTGTGCTTCTCATTTTTGTCTCTGGCAAGATTGTTCTCACTGGAGCTAAGTACCGCAAAGAGATTTACGCTGCCTTTGAGAACATGTTCCCGGTGCTCACTGAATACAGGAAAACTCAGCAGCGCTGAGGGAATGATTTGTCGACAGAATGGGGAGTTCGCTGCCGCTGTACATACCATCTTAAGGACCTGGCTGCCAAGATTTTGAGACATGCACCTGGCGTCATTCCTTTTTCTTTCCTTTGTTCTTCGTAGCAGTAGGGTAGGAGAGCAACTGCGTAAAGGAGAGTATGTAAACAAGTTGATCAAAGTATTCTTTTGATAAACTAATGCTGACATGCAAGAAATGCATCCTGACTTGAGATCATGTGTTGTGTGCCTGCGTTCTGAATTGTAAAGTACAGTTTGATTGTGAGAGAAGTGGTACTCCATACGAAGTATGGAAAATATCACATTCTTCTCTCTCCATGCAAAGCAAGATTCAGCTA]
[+] EMBL C28467 [ CGATCCNNCTCCGCCGCCGCCACCACCACCACCCACCCGGATCCCCACCTCCCTCCCCGATCTCACCACNTCCGTATAAAGGCGGCTCGGTTTGAAAAATCTTTGCCTCCGGAGGANGNGNGGGGGATGGCTGCCGCGGCGGTGGATCCGATGGCGCTGGGGCTGGGGACGAGCGGAGGAGGAGGAGGAGGCGAGTCGGCGGTGGGGGGTGATGGGGCGG CGGTGNGATCTCGTCGAGCACCCCTCC GGATCGTCCCCACCCTCCAGAACATTGTTTCGACAGTAAATCTGGACTNCAGGTTGGATCTGAAAAAAATCGCTCTACAGGCTCGTAATNCAGAGTACAA CCAAAGCGTTTTNCTTCAGTTATCATGAGGATAAGGGACCAAA ]
[+] EMBL C28655 [ CCAAAGACAACAGCCCTGATATTTGCTTCGGGAAANATGGTTTGCACTGGAGCAAAGAGCGAAGACCATTCAAAGCTTGCTGCGAGGAAGTATGCGCGAATCGTCCAAAAGCTTGGCTTCCCAGCAAAGTTCAAGGATTTCAAGATCCAGAACATTGTTGGTTCATGTGATGTCAAATTTCCTATTCGCCTGGAGGGCCTTGCTTATTCTCATGGCGCATTCTCTAGTTATGAGCCAGAGCTCTTCCCTGGGCTGATTTACCGGATGANGCAGCCAAAGATTGTGCTTCTNATTTTTGTCTCTGGCAAGATTGTTCTCACTGGAGCTAAGTACCGCAAAGAGATTTACGCTGCCTTTGAGAACATGTTCCCGGTGCTCACTGAATACAGG AAACTCAGCAGCGTTG GGGGATGATTTNTCG CAGAATG ]
consensusID : consensus_10542#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 682 fasta sequence
[CATTCCAAAGCCTTGTTGCAAGAAAGGNAGAAATTGTTCACTTGTCCCTATTTTCGGGCTTTTGCTGAATTGCTCTATACCAATTTTTATCTGATTATTTGTTAGCNCAGTATGCGCGAATCGTCCAAAAGCTTGGCTTCCCAGCAAAGTTCAAGGATTTCAAGATCCAGAACATTGTTGGTTCATGTGATGTCAAATTTCCTATTCGCCTGGAGGGCCTTGCTTATTCTCATGGCGCATTCTCTAGTTATGAGCCAGAGCTCTTCCCTGGGCTGATTTACCGGATGAAGCAGCCAAAGATTGTGCTTCTCATTTTTGTCTCTGGCAAGATTGTTCTCACTGGAGCTAAGTACCGCAAAGAGATTTACGCTGCCTTTGAGAACATGTTCCCGGTGCTCACTGAATACAGGAAAACTCAGCAGCGCTGAGGGAATGATTTGTCGACAGAATGGGGAGTTCGCTGCCGCTGTACATACCATCTTAAGGACCTG-GCT-GCCAAGATTTTGAGACATGCACCTGGCGTCATTCCTTTTTCTTTCCTTTGTTCTTCGTAGCAGTAGGGTAGGAGAGCAACTGCGTAAAGGAGAGTATGTAAACAAGTTGATCAAAGTATTCTTTTGATAAACTAATGCTGACATG--CAAGAAATGCATCCTGACTTGAGATCAAAAAAAAAAAAAAAAA]
[+] EMBL AU091604 [CATTCCAAAGCCTTGTTGCAAGAAAGGNAGAAATTGTTCACTTGTCCCTATTTTCGGGCTTTTGCTGAATTGCTCTATACCAATTTTTATCTGATTATTTGTTAGCNCAGTATGCGCGAATCGTCCAAAAGCTTGGCTTCCCAGCAAAGTTCAAGGATTTCAAGATCCAGAACATTGTTGGTTCATGTGATGTCAAATTTCCTATTCGCCTGGAGGGCCTTGCTTATTCTCATGGCGCATTCTCTAGTTATGAGCCAGAGCTCTTCCCTGGGCTGATTTACCGGATGAAGCAGCCAAAGATTGTGCTTCTCATTTTTGTCTCTGGCAAGATTGTTCTCACTGGAGCTAAGTACCGCAAAGAGATTTACGCTGCCTTTGAGAACATGTTCCCGGTGCTCACTGAATACAGGAAAACTCAGCAGCGCTGAGGGAATGATTTGTCGACAGAATGGGGAGTTCGCTGCCGCTGTACATACCATCTTAAGGACCTG GCT GCCAAGATTTTGAGACATGCACCTGGCGTCATTCCTTTTTCTTTCCTTTGTTCTTCGTAGCAGTAGGGTAGGAGAGCAACTGCGTAAAGGAGAGTATGTAAACAAGTTGATCAAAGTATTCTTTTGATAAACTAATGCTGACATG CAAGAAATGCATCCTGACTTGAGATCAAAAAAAAAAAAAAAAA]
[+] EMBL AU161367 [ TGCTTCTCATTTTTGTCTCTGGCAAGATTGTTCTCACTGGAGNTAAGTACCGCAAAGAGATTTACGCTGCCTTTGAGAACATGTTCCCGGTGCTCACTGAATACAGGAAAACTCAGCAGCGCTGAGGGAATGATTTGTCGACAGAATGGGGAGTTCGCTGCCGCTGTACATACCATCTTAAGGACCTG GCT GCCAAGATTTTGAGACATGCACCTGGCGTCATTCCTTTTTCTTTCCTTTGTTCTTCGTAGCAGTAGGGTAGGAGAGCAACTGCGTAAAGGAGAGTATGTAAACAAGTTGATCAAAGTATTCTTTTGATAAACTAATGCTGACATG CAAGAAATGCATCCTGACTTGAGATCAAAAAA ]
[+] EMBL BM038289 [ ATTTAC CT CCTTTGAGAACATGTTCCCGGTGCTCACTGAATACAGGAAAACTCAGCAGCGCTGAGGGAATGATTTGTCGACTGAATGGGGAGTTCGCT CCGCTGTACATACCATCTTAAGGACCTGCCCTCGCCCAGATTTTGAGACATGCACCTGGCGTCATTCCTTTTTCTTTCCTTTGTTCTTCGTA CAGTAGGGTAGGAGAGCAACTGCGTAAAGGAGAGTATGTAAACAAGTTGATC AAGTATTCTTTTGATAAACTAATGCTGACATGCCCACCCACCGCATCCTGACTTGAGATCAAAAAAA ]
consensusID : consensus_10542#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence
[CCCTAACCCGCGATCCGCCTCCGCCGCCGCCACCACCACCACCCACCCGGATCCCCACCTCCCTCCCCGATCTCACCACCTCCGTATAAAGGCGGCTCGGTTTGAAAAATCTTTGCCTCCGGAGGAGGAGGGGGGGATGGCTGCCGCGGCGGTGGATCCGATGGCGCTGGGGCTGGGGACGAGCGGAGGAGGAGGAGGAGGCGAGTCGGCGGTGGGGGGTGATGGGGCGGAGCCGGTGGATCTCGTCGAGCACCCCTCCGGGATCGTCCCCACCCTCCAGTGAGTCCCCCCCGCCACCCCCGCGTCGCAGGCTTGACGAGAACGATGGGGGTTGTTCTTGGATGATCTGGATCTGGGATATCTGAATGTGGGATGTGAACTTGACGGGGCTTGTGGATCTTGATGGGTTTGGGGTGGTGGTGGTGGTGGGGAGTAACAGCTAAACTTGACGGGGATTTTGTAGATCTGGACTTGCACGGGTTAGGGTTGGGGGAAACCTGCGGGTTCTTGATCTGATACGATCTTGCATTGGTTTGGAGGAGTGCGAGTTTATCTGATGTGGAGGCCG]
[+] EMBL AK111369 [CCCTAACCCGCGATCCGCCTCCGCCGCCGCCACCACCACCACCCACCCGGATCCCCACCTCCCTCCCCGATCTCACCACCTCCGTATAAAGGCGGCTCGGTTTGAAAAATCTTTGCCTCCGGAGGAGGAGGGGGGGATGGCTGCCGCGGCGGTGGATCCGATGGCGCTGGGGCTGGGGACGAGCGGAGGAGGAGGAGGAGGCGAGTCGGCGGTGGGGGGTGATGGGGCGGAGCCGGTGGATCTCGTCGAGCACCCCTCCGGGATCGTCCCCACCCTCCAGTGAGTCCCCCCCGCCACCCCCGCGTCGCAGGCTTGACGAGAACGATGGGGGTTGTTCTTGGATGATCTGGATCTGGGATATCTGAATGTGGGATGTGAACTTGACGGGGCTTGTGGATCTTGATGGGTTTGGGGTGGTGGTGGTGGTGGGGAGTAACAGCTAAACTTGACGGGGATTTTGTAGATCTGGACTTGCACGGGTTAGGGTTGGGGGAAACCTGCGGGTTCTTGATCTGATACGATCTTGCATTGGTTTGGAGGAGTGCGAGTTTATCTGATGTGGAGGCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10542#0 CCCTAACCCGCGATCCGCCTCCGCCGCCGCCACCACCACCACCCACCCGGATCCCCACCT 60
consensus_10542#1 ------------------------------------------------------------
consensus_10542#2 ------------------------------------------------------------
consensus_10542#0 CCCTCCCCGATCTCACCACCTCCGTATAAAGGCGGCTCGGTTTGAAAAATCTTTGCCTCC 120
consensus_10542#1 ------------------------------------------------------------
consensus_10542#2 ------------------------------------------------------------
consensus_10542#0 GGAGGAGGAGGGGGGGATGGCTGCCGCGGCGGTGGATCCGATGGCGCTGGGGCTGGGGAC 180
consensus_10542#1 ------------------------------------------------------------
consensus_10542#2 ------------------------------------------------------------
consensus_10542#0 GAGCGGAGGAGGAGGAGGAGGCGAGTCGGCGGTGGGGGGTGATGGGGCGGAGCCGGTGGA 240
consensus_10542#1 ------------------------------------------------------------
consensus_10542#2 ------------------------------------------------------------
consensus_10542#0 TCTCGTCGAGCACCCCTCCGGGATCGTCCCCACCCTCCAGAACATTGTTTCGACAGTAAA 300
consensus_10542#1 ------------------------------------------------------------
consensus_10542#2 ------------------------------------------------------------
consensus_10542#0 TCTGGACTGCAGGTTGGATCTGAAAAAAATCGCTCTACAGGCTCGTAATGCAGAGTACAA 360
consensus_10542#1 ---------------------------------------------------------CAT 3
consensus_10542#2 ------------------------------------------------------------
consensus_10542#0 CCCAAAGCGTTTTGCTGCAGTTATCATGAGGATAAGGGACCCAAAGACAACAGCCCTGAT 420
consensus_10542#1 TCCAAAGC--CTTGTTGCAA-------GAAAGGNAGAAATT---GTTCACTTGTCCCTAT 51
consensus_10542#2 ------------------------------------------------------------
consensus_10542#0 ATTTG--CTTCGGGAAAGATGGTTTGCACTGGAGCAAAGAGCGAAGACCATTCAAAGCTT 478
consensus_10542#1 TTTCGGGCTTTTGCTGAATTGCTCTATAC------------CAATTTTTATCTGATTATT 99
consensus_10542#2 ---------------------------------------------CCCTAACCCGCGATC 15
* *
consensus_10542#0 GCTGCGAGGAAGTATGCGCGAATCGTCCAAAAGCTTGGCTTCCCAGCAAAGTTCAAGGAT 538
consensus_10542#1 TGT-TAGCNCAGTATGCGCGAATCGTCCAAAAGCTTGGCTTCCCAGCAAAGTTCAAGGAT 158
consensus_10542#2 CGC-CTCCGCCGCCGCCACCA--CCACCACCCACCCGGATCCCCACCTCC-CTCCCCGAT 71
* * * * * *** * ** * **** * ** ***
consensus_10542#0 TTCAAGATC-CAGAACATTGTTGGTTCATGTGATGTCAAATTTCCTATTCGCCTGGAGGG 597
consensus_10542#1 TTCAAGATC-CAGAACATTGTTGGTTCATGTGATGTCAAATTTCCTATTCGCCTGGAGGG 217
consensus_10542#2 CTCACCACCTCCGTATAAAGGCGGCTCGGTTTGAAAAATCTTTGCCTCCGGAGGAGGAGG 131
*** * * * * * * * ** ** * * *** * * * **
consensus_10542#0 CCATGCTTATTCTCATGGCGCATTCTCTAGTTATGAGCCAGAGCTCTTCCCTGGGCTGAT 657
consensus_10542#1 CCTTGCTTATTCTCATGGCGCATTCTCTAGTTATGAGCCAGAGCTCTTCCCTGGGCTGAT 277
consensus_10542#2 GGGGGATGGCTGCCGCGGCGGTGGATCCGATGGC--GCTGGGGCTGGGGAC-GAGCGGAG 188
* * * * **** ** * ** * *** * * ** **
consensus_10542#0 TTACCGGATGAAGC-AGCCAAAGATTGTGCTTCTCATTTTTGTCTCTGGCAAGATTGTTC 716
consensus_10542#1 TTACCGGATGAAGC-AGCCAAAGATTGTGCTTCTCATTTTTGTCTCTGGCAAGATTGTTC 336
consensus_10542#2 GAGGAGGAGGAGGCGAGTCGGCGGTGGGG------GGTGATGGGGCGGAGCCGGTGGATC 242
*** ** ** ** * * * * * * ** * * * * * **
consensus_10542#0 TCACTGGAGCTAAGTACCGCAAAGAGATTTACGCTGCCTTTGAGAACATGTTCCCGGTGC 776
consensus_10542#1 TCACTGGAGCTAAGTACCGCAAAGAGATTTACGCTGCCTTTGAGAACATGTTCCCGGTGC 396
consensus_10542#2 TCGTCG------AGCACCCCTCCGGGATCGTCCCCACCCTCCAG--TGAGTCCCCCCCGC 294
** * ** *** * * *** * * ** * ** ** *** **
consensus_10542#0 TCACTGAATACAGGAAAACTCAGCAGCGCTGAGGGAATGATTTGTCGACAGAATGGGGAG 836
consensus_10542#1 TCACTGAATACAGGAAAACTCAGCAGCGCTGAGGGAATGATTTGTCGACAGAATGGGGAG 456
consensus_10542#2 CACCCCCGCGTCGCAGGCTTGACGAGAACGATGGGGGTTGTTCTTGGATGATCTGGA--- 351
* * * * * ** * *** * ** * ** ***
consensus_10542#0 TTCGCTGCCGCTGTACATACCATCTTAAG--GACCTGGCTGCCAAGATTTTGA--GACAT 892
consensus_10542#1 TTCGCTGCCGCTGTACATACCATCTTAAG--GACCTGGCTGCCAAGATTTTGA--GACAT 512
consensus_10542#2 TCTGGGATATCTGAATGTGGGATGTGAACTTGACGGGGCTTGTG-GATCTTGATGGGTTT 410
* * *** * * ** * ** *** **** *** **** * *
consensus_10542#0 GCACCTGGCGTCATTCCTTTTTCTTTCCTTTGTTCTTCGTAGCAGTAGGGTAGGAGAGCA 952
consensus_10542#1 GCACCTGGCGTCATTCCTTTTTCTTTCCTTTGTTCTTCGTAGCAGTAGGGTAGGAGAGCA 572
consensus_10542#2 GGGGTGGTGGTGGTGGTGGGGAGTAACAGCTAAACTTGACGGGGATTTTGTAGATCTGGA 470
* * ** * * * * *** * * **** * *
consensus_10542#0 ACTGCGTAAAGGAGAGTATGTAAACAAGTTGATCAAAGTATTCTTTTGATA--AACTAAT 1010
consensus_10542#1 ACTGCGTAAAGGAGAGTATGTAAACAAGTTGATCAAAGTATTCTTTTGATA--AACTAAT 630
consensus_10542#2 CTTGCACGGGTTAGGGT-TGGGGGAAACCTG--CGGGTTCTTGATCTGATACGATCTTGC 527
*** ** ** ** ** ** * * ** * ***** * **
consensus_10542#0 GCTGACATGCAAGAAATGCATCCTGACTTGAGATCATGTGTTGTGTGCCTGCGTTCTGAA 1070
consensus_10542#1 GCTGACATGCAAGAAATGCATCCTGACTTGAGATCAAAAAAAAAAAAAAAAA-------- 682
consensus_10542#2 ATTGGTTTG-GAGGAGTGCGAGTTTATCTGATGTGGAGGCCG------------------ 568
** ** ** * *** * * *** *
consensus_10542#0 TTGTAAAGTACAGTTTGATTGTGAGAGAAGTGGTACTCCATACGAAGTATGGAAAATATC 1130
consensus_10542#1 ------------------------------------------------------------
consensus_10542#2 ------------------------------------------------------------
consensus_10542#0 ACATTCTTCTCTCTCCATGCAAAGCAAGATTCAGCTA 1167
consensus_10542#1 -------------------------------------
consensus_10542#2 -------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||