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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10548#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 776 fasta sequence
[GAGGTCGAGAGATGGCGACAAATAGGATGGCAGTGGCGATCATGGTGCAGTTGCTGGCAACGGCGGCGGCGGTGGCGAAGTCGTCGGAGCCGGCCCTTACCGGCAGCAGTATCTCCGCCGCCGACGACGACCTGGCGTCGAAGGTGGGGATAAGGAGGCTCCTTCAGGACGGCGGCGACTGCATCCCTAACTACAATGTTTGCTGCAGCAACTGCGGCTGGCCGTTCGAACGGACCAATTGCTGCGACCCGGACAACTACGTGTGCCAGTACTGGCCGGAAATGGATCCAGCACATGGCCAGGACTGGTGCATTCCTCGCAATTACTGGAGTACTTCCTCCACATAATGTTTGTTCAGTTTTATATCTTCACAATTTGATTTTTTTTGGAAGAGAGAGTAAGCCTTAAGGCCATGGAAAACGGTCCGTTCTGTTAACGTGATCGCCCGAATCAAAACTCCATTTTTAGCTAATAATTGGCCGTATCCCATTTAATCGTCTGAATAATCATTCACATGTTATACTTGATGGGTAGTATTTGGGAACCTTTTTAGTATTATTTTTTTCTACATATTTTGTTTTACTTATTCAATATAATATAACAAAACATGTCGCTGTTTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]
[+] EMBL CA758500 [GAGGTCGAGAGATGGCGACAAATAGGATGGCAGTGGCGATCATGGTGCAGTTGCTGGCAACGGCGGCGGCGGTGGCGAAGTCGTCGGAGCCGGCCCTTACCGGCAGCAGTATCTCCGCCGCCGACGACGACCTGGCGTCGAAGGTGGGGATAAGGAGGCTCCTTCAGGACGGCGGCGACTGCATCCCTAACTACAATGTTTGCTGCAGCAACTGCGGCTGGCCGTTCGAACGGACCAATTGCTGCGACCCGGACAACTACGTGTGCCAGTACTGGCCGGAAATGGATCCAGCACATGGCCAGGACTGGTGCATTCCTCGCAATTACTGGAGTACTTCCTCCACATAATGTTTGTTCAGTTTTATATCTTCACAATTTGATTTTTTTTGGAAGAGAGAGTAAGCCTTAAGGCCATGGAAAACGGTCCGTTCTGTTAACGTGATCGCCCGAATCAAAACTCCATTTTTAGCTAATAATTGGCCGTATCCCATTTAATCGTCTGAATAATCATTCACATGTTATACTTGATGGGTAGTATTTGGGAACCTTTTTAGTATTATTTTTTTCTACATATTTTGTTTTACTTATTCAATATAATATAACAAAACATGTCGCTGTTTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]
consensusID : consensus_10548#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 660 fasta sequence
[CAAATACCATCACAGAGAGAGGTCGAGAGATGGCGACGAATAGGATGGCAGTGGCGATCATGGTGCAGTTGCTGGCAACGGCGGCGGCGGCGGCGGCGAAGTCGTCGGAGCCGGCCCTTACCGGCAGCAGTATCTCCGCCGCCGACGACGACCTGGCGTCGAAGGTGGGGATAAGGAGGCTCCTTCAGGACGGCGGCGACTGCATCCCTAACTACAATGTTTGCTGCAGCAACTGCGGCTGGCCGTTCGAACGGACCAATTGCTGCGACCCGGACAACTACGTGTGCCAGTACTGGCCGGAAATGGATCCAGCACATGGCCAGGACTGGTGCATTCCTCGCAATTACTGGAGTACTTCCTCCCCATAATGTTTGTTCAGTTTTATATCTTCACAATTTGATTTTTTTTTGAAGAGAGAGTAAGCCTTAAGGCCATGGAAAACGGTCCGTTCTGTTAACGTGATCGCCCGAATCAAAACTCCATTTTTAGCTAATAATTGGCCGTATCCCATTTAATCGTCTGAATAATCATTCACATGTTATACTTGATGGGTAGTATTTGGGACCTTTTTTAGTATTATTTTTTTCTACATATTTTGTTTTACTTATTCAATATAATATAACAAAACATGTCGCTGTTTGGTGAATAAAAAAAAAAAAA]
[+] EMBL AK111347 [CAAATACCATCACAGAGAGAGGTCGAGAGATGGCGACGAATAGGATGGCAGTGGCGATCATGGTGCAGTTGCTGGCAACGGCGGCGGCGGCGGCGGCGAAGTCGTCGGAGCCGGCCCTTACCGGCAGCAGTATCTCCGCCGCCGACGACGACCTGGCGTCGAAGGTGGGGATAAGGAGGCTCCTTCAGGACGGCGGCGACTGCATCCCTAACTACAATGTTTGCTGCAGCAACTGCGGCTGGCCGTTCGAACGGACCAATTGCTGCGACCCGGACAACTACGTGTGCCAGTACTGGCCGGAAATGGATCCAGCACATGGCCAGGACTGGTGCATTCCTCGCAATTACTGGAGTACTTCCTCCCCATAATGTTTGTTCAGTTTTATATCTTCACAATTTGATTTTTTTTTGAAGAGAGAGTAAGCCTTAAGGCCATGGAAAACGGTCCGTTCTGTTAACGTGATCGCCCGAATCAAAACTCCATTTTTAGCTAATAATTGGCCGTATCCCATTTAATCGTCTGAATAATCATTCACATGTTATACTTGATGGGTAGTATTTGGGACCTTTTTTAGTATTATTTTTTTCTACATATTTTGTTTTACTTATTCAATATAATATAACAAAACATGTCGCTGTTTGGTGAATAAAAAAAAAAAA ]
[+] EMBL AU077925 [ TGCAGTTGCTGGCAACGGCGGCGGCGGCGGCGGCGAAGTCGTCGGAGCCGGCCCTTACCGGCAGCAGTATCTCCGCCGCCGACGACGACCTGGCGTCGAAGGTGGGGATAAGGAGGCTCCTTCAGGACGGCGGCGACTGCATCCCTAACTACAATGTTTGCTGCAGCAACTGCGGCTGGCCGTTCGAACGGACCAATTGCTGCGACCCGGACAACTACGTGTGCCAGTACTGGCCGGAAATGGATCCAGCACATGGCCAGGACTGGTGCATTCCTCGCAATTACTGGAGTACTTCCTCCCCATAATGTTTGTTCAGTTTTATATCTTCACAATTTGATTTTTTTTTGAAGAGAGAGTAAGCCTTAAGGCCATGGAAAACGGTCCGTTCTGTTAACGTGATCGCCCGAATCAAAACTCCATTTTTAGCTAATAATTGGCCGTATCCCATTTAATCGTCTGAATAATCATTCACATGTTATACTTGATGGGTAGTATTTGGGACCTTTTTTAGTATTATTTTTTTCTACATATTTTGTTTTACTTATTCAATATAATATAACAAAACATGTCGCTGTTTGGTGAATAAAAAAAAAAAAA]
consensusID : consensus_10548#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 659 fasta sequence
[CGCCCACGCGTCCGCACAGAGAGAGGTCGAGAGATGGCGACAAATAGGATGGCAGTGGCGATCATGGTGCAGTTGCTGGCAACGGCGGCGGCGGCGGCGGCGAAGTCGTCGGAGCCGGCCCTTACCGGCAGCAGTATCTCCGCCGCCGACGACGACCTGGCGTCGAAGGTGGGGATAAGGAGGCTCCTTCAGGACGGCGGCGACTGCATCCCTAACTACAATGTTTGC-TGCAGCAACTGCGGCTGGCCGTTCGAACGGACCAATTGC-TGCGACCCGGACAACTACGTGTGCCAGTACTGGCCGGAAATGGATCCAGCACATGGCCAGGACTGGTGCA-TTCCTCGCAATTACTGGAGTAC-TTCCTCCCCATAATGTTTGTTCAGTTTTATATCTTCACAATTTGATTTTTTTTTGAAGAGAGAGTAAGCCTTAAGGCCATGGAAAACGGTCCGTTCTGTTAACGTGATCGCCCGAATCAAAACTCCATTTTTAGCTAATAATTGGCCGTATCCCATTTAATCGTCTGAATAATCATTCACATGTTATACTTGATGGGTAGTATTTGGGACCTTTTTTAGTATTATTTTTTTCTACATATTTTGTTTTACTTATTCAATATAATATAACAAAACATGTCGCTGTTTGGTGAAAAAAAAAAA]
[+] EMBL AU031999 [CGCCCACGCGTCCGCACAGAGAGAGGTCGAGAGATGGCGACAAATAGGATGGCAGTGGCGATCATGGTGCAGTTGCTGGCAACGGCGGCGGCGGCGGCGGCGAAGTCGTCGGAGCCGGCCCTTACCGGCAGCAGTATCTCCGCCGCCGACGACGACCTGGCGTCGAAGGTGGGGATAAGGAGGCTCCTTCAGGACGGCGGCGACTGCATCCCTAACTACAATGTTTGC TGCAGCAACTGCGGCTGGCCGTTCGAACGGACCAATTGC TGCGACCCGGACAACTACGTGTGCCAGTACTGGCCGGAAATGGATCCAGCACATGGCCAGGACTGGTGCA TTCCTCGCAATTACTGGAGTAC TTCCTCCCCATAATGTTTGTTCAGTTTTATATCTTCACAATTTGATTTTTTTTTGAAGAGAGAGTAAGCCTTAAGGCCATGGAAAACGGTCCGTTCTGTTAACGTGATCGCCCGAATCAAAACTCCATTTTTAGCTAATAATTGGCCGTATCCCATTTAATCGTCTGAATAATCATTCACATGTTATACTTGATGGGTAGTATTTGGGACCTTTTTTAGTATTATTTTTTTCTACATATTTTGTTTTACTTATTCAATATAATATAACAAAACATGTCGCTGTTTGGTGAAAAAAAAAAA]
[+] EMBL OSR3091A [ CCGCACAGAGAGAGGTCGAGAGATGGCGACAAATAGGATGGCAGTGGCGATCATGGTGCAGTTGCTGGCAACGGNGGNGGCGGCGGCGGCGAAGTCGTCGGAGCCGGCCCTTACCGGCAGCAGTATCTTCGNCGCCGACGACGACCTGGCGTCGAAGGTGGGGATAAGGAGGCTCCTTCAGGACGGCGGCGACTGCATCCCTAACTACAATGTTTGCTTGCAGCAACTGCGGCTGGCCGTTCGAACGGACCAATTGCTTGCGACCCGGACAACTACGTGTGNCAGTACTGGCCGGAAATGGNTCCAGCACATGGCCAGGACTTGTGCATTTCCTCGCAATTACTGGAGTACTTTCCTTCCCATAATGTTTGTTCAGTTTTATATCTTCAC ]
[+] EMBL AU077924 [ GTCGAGAGATGGCGACAAATAGGATGGCAGTGGCGATCATGGTGCAGTTGCTGGCAACGGCGGCGGCGGCGGCGGCGAAGTCGTCGGAGCCGGCCCTTACCGGCAGCAGTATCTCCGCCGCCGACGACGACCTGGCGTCGAAGGTGGGGATAAGGAGGCTCCTTCAGGACGGCGGCGACTGCATCCCTAACTACAATGTTTGC TGCAGCAACTGCGGCTGGCCGTTCGAACGGACCAATTGC TGCGACCCGGACAACTACGTGTGCCAGTACTGGCCGGAAATGGATCCAGCACATGGCCAGGACTGGTGCA TTCCTCGCAATTACTGGAGTAC TTCCTCCCCATAATGTTTGTTCAGTTTTATATCTTCACAATTTGATTTTTTTTTGAAGA ]
consensusID : consensus_10548#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence
[AGAGAGAGGTCGAGAGATGGCGACAAATAGGATGGCAGTGGCGATCATGGTGCAATTGCTGGCAGCGGCGGCGGCGGCGGCGGCGAAGTCGTCGGAGCCGGCCCTTACCGGCAGCAGTATCTCGGCCGCCGACGACGACCTGGCGTCGAAGGTGGGGATAAGGAGGCTCCTTCAGGACGGCGGCGACTGCATCCCTAACTACAATGTTTGCTGCAGCAACTGCGGCTGGCCGTTCGAACGGACCAATTGCTGCGACCCGGACAACTACGTGTGCCAGTACTGGCCGGAAATGGATCCAGCACATGGCCAGGACTGGTGCATTCCTCGCAATTACTGGAGTACTTCCTCCACATAATGTTTGTTCAGTTTTATATCTTCACAATTTGATTTTTTTTGGAAGAGAGAGTAAGCCTTAAGGCCATGGAAAACGGTCCGTTCTGTTAACGTGATCGCCCGAATCAAAACTCCATTTTTAGCTAATAATTGGCCGTATCCCATTTAATCGTCTGAATAATCATTCACATGTTATACTTGATGGCGGCAAAAAAAACACAATAAAAACAAAAAAACTCCGAGGGGGCGACCCGGCC]
[+] EMBL CA755103 [AGAGAGAGGTCGAGAGATGGCGACAAATAGGATGGCAGTGGCGATCATGGTGCAATTGCTGGCAGCGGCGGCGGCGGCGGCGGCGAAGTCGTCGGAGCCGGCCCTTACCGGCAGCAGTATCTCGGCCGCCGACGACGACCTGGCGTCGAAGGTGGGGATAAGGAGGCTCCTTCAGGACGGCGGCGACTGCATCCCTAACTACAATGTTTGCTGCAGCAACTGCGGCTGGCCGTTCGAACGGACCAATTGCTGCGACCCGGACAACTACGTGTGCCAGTACTGGCCGGAAATGGATCCAGCACATGGCCAGGACTGGTGCATTCCTCGCAATTACTGGAGTACTTCCTCCACATAATGTTTGTTCAGTTTTATATCTTCACAATTTGATTTTTTTTGGAAGAGAGAGTAAGCCTTAAGGCCATGGAAAACGGTCCGTTCTGTTAACGTGATCGCCCGAATCAAAACTCCATTTTTAGCTAATAATTGGCCGTATCCCATTTAATCGTCTGAATAATCATTCACATGTTATACTTGATGGCGGCAAAAAAAACACAATAAAAACAAAAAAACTCCGAGGGGGCGACCCGGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10548#1 ----CAAATACCATCACAGAGAGAGGTCGAGAGATGGCGACGAATAGGATGGCAGTGGCG 56
consensus_10548#2 CGCCCACGCGTCCGCACAGAGAGAGGTCGAGAGATGGCGACAAATAGGATGGCAGTGGCG 60
consensus_10548#0 ----------------------GAGGTCGAGAGATGGCGACAAATAGGATGGCAGTGGCG 38
consensus_10548#3 -----------------AGAGAGAGGTCGAGAGATGGCGACAAATAGGATGGCAGTGGCG 43
******************* ******************
consensus_10548#1 ATCATGGTGCAGTTGCTGGCAACGGCGGCGGCGGCGGCGGCGAAGTCGTCGGAGCCGGCC 116
consensus_10548#2 ATCATGGTGCAGTTGCTGGCAACGGCGGCGGCGGCGGCGGCGAAGTCGTCGGAGCCGGCC 120
consensus_10548#0 ATCATGGTGCAGTTGCTGGCAACGGCGGCGGCGGTGGCG---AAGTCGTCGGAGCCGGCC 95
consensus_10548#3 ATCATGGTGCAATTGCTGGCAGCGGCGGCGGCGGCGGCGGCGAAGTCGTCGGAGCCGGCC 103
*********** ********* ************ **** ******************
consensus_10548#1 CTTACCGGCAGCAGTATCTCCGCCGCCGACGACGACCTGGCGTCGAAGGTGGGGATAAGG 176
consensus_10548#2 CTTACCGGCAGCAGTATCTCCGCCGCCGACGACGACCTGGCGTCGAAGGTGGGGATAAGG 180
consensus_10548#0 CTTACCGGCAGCAGTATCTCCGCCGCCGACGACGACCTGGCGTCGAAGGTGGGGATAAGG 155
consensus_10548#3 CTTACCGGCAGCAGTATCTCGGCCGCCGACGACGACCTGGCGTCGAAGGTGGGGATAAGG 163
******************** ***************************************
consensus_10548#1 AGGCTCCTTCAGGACGGCGGCGACTGCATCCCTAACTACAATGTTTGCTGCAGCAACTGC 236
consensus_10548#2 AGGCTCCTTCAGGACGGCGGCGACTGCATCCCTAACTACAATGTTTGCTGCAGCAACTGC 240
consensus_10548#0 AGGCTCCTTCAGGACGGCGGCGACTGCATCCCTAACTACAATGTTTGCTGCAGCAACTGC 215
consensus_10548#3 AGGCTCCTTCAGGACGGCGGCGACTGCATCCCTAACTACAATGTTTGCTGCAGCAACTGC 223
************************************************************
consensus_10548#1 GGCTGGCCGTTCGAACGGACCAATTGCTGCGACCCGGACAACTACGTGTGCCAGTACTGG 296
consensus_10548#2 GGCTGGCCGTTCGAACGGACCAATTGCTGCGACCCGGACAACTACGTGTGCCAGTACTGG 300
consensus_10548#0 GGCTGGCCGTTCGAACGGACCAATTGCTGCGACCCGGACAACTACGTGTGCCAGTACTGG 275
consensus_10548#3 GGCTGGCCGTTCGAACGGACCAATTGCTGCGACCCGGACAACTACGTGTGCCAGTACTGG 283
************************************************************
consensus_10548#1 CCGGAAATGGATCCAGCACATGGCCAGGACTGGTGCATTCCTCGCAATTACTGGAGTACT 356
consensus_10548#2 CCGGAAATGGATCCAGCACATGGCCAGGACTGGTGCATTCCTCGCAATTACTGGAGTACT 360
consensus_10548#0 CCGGAAATGGATCCAGCACATGGCCAGGACTGGTGCATTCCTCGCAATTACTGGAGTACT 335
consensus_10548#3 CCGGAAATGGATCCAGCACATGGCCAGGACTGGTGCATTCCTCGCAATTACTGGAGTACT 343
************************************************************
consensus_10548#1 TCCTCCCCATAATGTTTGTTCAGTTTTATATCTTCACAATTTGATTTTTTTTTGAAGAGA 416
consensus_10548#2 TCCTCCCCATAATGTTTGTTCAGTTTTATATCTTCACAATTTGATTTTTTTTTGAAGAGA 420
consensus_10548#0 TCCTCCACATAATGTTTGTTCAGTTTTATATCTTCACAATTTGATTTTTTTTGGAAGAGA 395
consensus_10548#3 TCCTCCACATAATGTTTGTTCAGTTTTATATCTTCACAATTTGATTTTTTTTGGAAGAGA 403
****** ********************************************* *******
consensus_10548#1 GAGTAAGCCTTAAGGCCATGGAAAACGGTCCGTTCTGTTAACGTGATCGCCCGAATCAAA 476
consensus_10548#2 GAGTAAGCCTTAAGGCCATGGAAAACGGTCCGTTCTGTTAACGTGATCGCCCGAATCAAA 480
consensus_10548#0 GAGTAAGCCTTAAGGCCATGGAAAACGGTCCGTTCTGTTAACGTGATCGCCCGAATCAAA 455
consensus_10548#3 GAGTAAGCCTTAAGGCCATGGAAAACGGTCCGTTCTGTTAACGTGATCGCCCGAATCAAA 463
************************************************************
consensus_10548#1 ACTCCATTTTTAGCTAATAATTGGCCGTATCCCATTTAATCGTCTGAATAATCATTCACA 536
consensus_10548#2 ACTCCATTTTTAGCTAATAATTGGCCGTATCCCATTTAATCGTCTGAATAATCATTCACA 540
consensus_10548#0 ACTCCATTTTTAGCTAATAATTGGCCGTATCCCATTTAATCGTCTGAATAATCATTCACA 515
consensus_10548#3 ACTCCATTTTTAGCTAATAATTGGCCGTATCCCATTTAATCGTCTGAATAATCATTCACA 523
************************************************************
consensus_10548#1 TGTTATACTTGATGGGTAGTATTTGGGACCTTTTTTAGTATTATTTTTTTCTACATATTT 596
consensus_10548#2 TGTTATACTTGATGGGTAGTATTTGGGACCTTTTTTAGTATTATTTTTTTCTACATATTT 600
consensus_10548#0 TGTTATACTTGATGGGTAGTATTTGGGAACCTTTTTAGTATTATTTTTTTCTACATATTT 575
consensus_10548#3 TGTTATACTTGATGG-CGGCAAA-AAAAACACAATAAAAACAAAAAAACTCCGAGGGGGC 581
*************** * * * * * * * * **
consensus_10548#1 TGTTTTACTTATTCAATATAATATAACAAAACATGTCGCTGTTTGGTGAATAAAAAAAAA 656
consensus_10548#2 TGTTTTACTTATTCAATATAATATAACAAAACATGTCGCTGTTTGGTGAAAAAAAAAAA- 659
consensus_10548#0 TGTTTTACTTATTCAATATAATATAACAAAACATGTCGCTGTTTGGTGNNNNNNNNNNNN 635
consensus_10548#3 GACCCGGCC--------------------------------------------------- 590
*
consensus_10548#1 AAAA-------------------------------------------------------- 660
consensus_10548#2 ------------------------------------------------------------
consensus_10548#0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 695
consensus_10548#3 ------------------------------------------------------------
consensus_10548#1 ------------------------------------------------------------
consensus_10548#2 ------------------------------------------------------------
consensus_10548#0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 755
consensus_10548#3 ------------------------------------------------------------
consensus_10548#1 ---------------------
consensus_10548#2 ---------------------
consensus_10548#0 NNNNNNNNNNNNNNNNNNNNN 776
consensus_10548#3 ---------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||