cluster # 10549

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Oryza sativa
cluster # 10549 cluster # 10549 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10549#0 length = 655 sequences # 4

consensus_10549#1 length = 573 sequences # 3

consensusID : consensus_10549#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 655
fasta sequence

                              [CCATTTCCCCACCTCGATTACTCGATTGCGCCGGTTTTAGGCTCCCTTCTCTCTCCAGTCTCCACCTCTTCGGCCGTTGGGCGCCATGGCGGCCATCTTCCCCCACCTCGCCTCGACTCTTCCGCTTCTCCGGGCTGTCCGAACCCCTCGCCGGCTTCCGCCTGCTGTCTCCGCCGTCCCTCCCCGAGCCGCCCGCGTCGTCCTCCGTGGATTCAGGCTTCCTGATCCAGCTGCAAGAAAATTTCTCTGTTTCGAGGATTCAATAGGCTTGCAGACGGAGCACCAGAAGCCAGATTCTACTAGCACTGGTGCAAAACAGAACAGCTCAAGTGATGATAACTCAAGCTCAACAGATGGCCCACCCGTCCTAACTATTTT-GGCTGGTATCATTGT-GTTCCTTCTAGTCTTGTGGGTTATCGGATCGCTCTTC-ACCTGGATTGCTGGTTTGGTCTTTGGCGCTGCAAAATCTTAGAAGTTCAAATTTTAGGATAATTCTGCACCTTTTTAGTTGTACATACTTCGGTCCAATTGTATGCCAATCTTGGATAAATTGCACTTGATGGTTTCATTCTTAAGTGTTGAACAACTGCTTCATGGTGTTGTACCATTGTTTCCAGCTGTGCCTTGGGTATTGCCTTTTCATAAAAAAAAAAAA]

[+] EMBL C73989               [CCATTTCCCCACCTCGATTACTCGATTGCGCCGGTTTTAGGCTCCCTTCTCTCTCCAGTCTCCACCTCTTCGGCCGTTGGGCGCCATGGCGGCCATCTTCCCCCACCTCGCCTCGACTCTTCCGCTTCTCCGGGCTGTCCGAACCCCTCGCCGGCTTCCGCCTGCTGTCTCCGCCGTCCCTCCCCGAGCCGCCCGCGTCGTCCTCCGTGGATTCAGGCTTCCTGATCCAGCTGCAAGAAAATTTCTCTGTTTCGAGGATTCAATAGGCTTGCAGACGGAGCACCAGAAGCCAGATTCTACTAGCACTGGTGCAAAACAGAACAGCTCAAGTGATGATAACTCAAGCTCAACAGATGGCCCACCCGTCCTAACTATTTTNGGCTGGTATCATTGTGGTTCCTTCTAGTCTTGTGGGTAATCGGATCGGTTTTCAACCTGGgatg                                                                                                                                                                                                                       ]
[+] EMBL AK063116             [                                                                          CGTTGGGCGCCATGGCGGCCATCTTCCCCCACCTCGCCTCGACTCTTCCGCTTCTCCGGGCTGTCCGAACCCCTCGCCGGCTTCCGCCTGCTGTCTCCGCCGTCCCTCCCCGAGCCGCCCGCGTCGTCCTCCGTGGATTCAGGCTTCCTGATCCAGCTGCAAGAAAATTTCTCTGTTTCGAGGATTCAATAGGCTTGCAGACGGAGCACCAGAAGCCAGATTCTACTAGCACTGGTGCAAAACAGAACAGCTCAAGTGATGATAACTCAAGCTCAACAGATGGCCCACCCGTCCTAACTATTTT GGCTGGTATCATTGT GTTCCTTCTAGTCTTGTGGGTTATCGGATCGCTCTTC ACCTGGATTGCTGGTTTGGTCTTTGGCGCTGCAAAATCTTAGAAGTTCAAATTTTAGGATAATTCTGCACCTTTTTAGTTGTACATACTTCGGTCCAATTGTATGCCAATCTTGGATAAATTGCACTTGATGGTTTCATTCTTAAGTGTTGAACAACTGCTTCATGGTGTTGTACCATTGTTTCCAGCTGTGCCTTGGGTATTGCCTT                 ]
[+] EMBL AU174707             [                                                                                                  TCCCCCACCTCGCCTCGACTCTTCCGCTTCTCCGGGCTGTCCGAACCCCTCGCCGGCTTCCGCCTGCTGTCTCCGCCGTCCCTCCCCGAGCCGCCCGCGTCGTCCTCCGTGGATTCAGGCTTCCTGATCCAGCTGCAAGAAAATTTCTCTGTTTCGAGGATTCAATAGGCTTGCAGACGGAGCACCAGAAGCCAGATTCTACTAGCACTGGTGCAAAACAGAACAGCTCAAGTGATGATAACTCAAGCTCAACAGATGGCCCACCCGTCCTAACTATTTT GGCTGGTATCATTGT GTTCCTTCTAGTCTTGTGGGTTATCGGATCGCTCTTC ACCTGGATTGCTGGTTTGGTCTTTGGCGCTGCAAAATCTTAGAAGTTCAAATTTT                                                                                                                                                                          ]
[+] EMBL AU174706             [                                                                                                                                                                                                         CCTCCGTGGATTCAGGCTTCCTGATCCAGCTGCAAGAAAATTTCTCTGTTTCGAGGATTCAATAGGCTTGCAGACGGAGCACCAGAAGCCAGATTNTACTAGCACTGGTGCAAAACAGAACAGCTCAAGTGATGATAACTCAAGCTCAACAGATGGCCCACCCGTCCTAACTATTTT GGCTGGTATCATTGT GTTCCTTCTAGTCTTGTGGGTTATCGGATCGCTCTTC ACCTGGATTGCTGGTTTGGTCTTTGGCGCTGCAAAATCTTAGAAGTTCAAATTTTAGGATAATTCTGCACCTTTTTAGTTGTACATACTTCGGTCCAATTGTATGCCAATCTTGGATAAATTGCACTTGATGGTTTCATTCTTAAGTGTTGAACAACTGCTTCATGGTGTTGTACCATTGTTTCCAGCTGTGCCTTGGGTATTGCCTTTTCATAAAAAAAAAAAA]




>consensus_10549#0
CCATTTCCCCACCTCGATTACTCGATTGCGCCGGTTTTAGGCTCCCTTCTCTCTCCAGTC
TCCACCTCTTCGGCCGTTGGGCGCCATGGCGGCCATCTTCCCCCACCTCGCCTCGACTCT
TCCGCTTCTCCGGGCTGTCCGAACCCCTCGCCGGCTTCCGCCTGCTGTCTCCGCCGTCCC
TCCCCGAGCCGCCCGCGTCGTCCTCCGTGGATTCAGGCTTCCTGATCCAGCTGCAAGAAA
ATTTCTCTGTTTCGAGGATTCAATAGGCTTGCAGACGGAGCACCAGAAGCCAGATTCTAC
TAGCACTGGTGCAAAACAGAACAGCTCAAGTGATGATAACTCAAGCTCAACAGATGGCCC
ACCCGTCCTAACTATTTTGGCTGGTATCATTGTGTTCCTTCTAGTCTTGTGGGTTATCGG
ATCGCTCTTCACCTGGATTGCTGGTTTGGTCTTTGGCGCTGCAAAATCTTAGAAGTTCAA
ATTTTAGGATAATTCTGCACCTTTTTAGTTGTACATACTTCGGTCCAATTGTATGCCAAT
CTTGGATAAATTGCACTTGATGGTTTCATTCTTAAGTGTTGAACAACTGCTTCATGGTGT
TGTACCATTGTTTCCAGCTGTGCCTTGGGTATTGCCTTTTCATAAAAAAAAAAAA

consensusID : consensus_10549#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 573
fasta sequence

                              [GGCCGTTGGGCGCCATGGCGGCCATCTTCCCCCACCTCGCCTCGACTCTTCCGCTTCTCCGGGCTGTCCGAA-CCCCTCGCCGGCTTCCGCCTGCTGTCTCCGCCGTCCCTCCCCGAGCCGCCCGCGTCGTCCTCCGTGGATTCAGGCTTCCTGATCCAGCTGCAAGAAAATTTCTCTGTTCCGAGGATTCAATAGGCTTGCAGACGGAGCACCAGAAGCCAGATTCTACTAGCACTGGTGCAAAACAGAACAGCTCAAGTGATGATAACTCAAGCTCAACAGATGGCCCACCCGTCCTAACTATTTTGGCTGGTATCATTGTGTTCCTTCTAGTCTTGTGGGTTATCGGATCGCTCTTCACCTGGATTGCTGGTTTGGTCTTTGGCGCTGCAAAATCTTAGAAGTTCAAATTTTAGGATAATTCTGCACCTTTTTAGTTGTACATACTTCGGTCCAATTGTATGCCAATCTTGGATAAATTGCACTTGATGGTTTCATTCTTAAGTGTTGAACAACTGCTTCATGGTGTTGTA--A--------AAAAAAAAAAAAAAAAACACTAAAAAAAAAAAAAAAAAA]

[+] EMBL CF282362             [GGCCGTTGGGCGCCATGGCGGCCATCTTCCCCCACCTCGCCTCGACTCTTCCGCTTCTCCGGGCTGTCCGAA CCCCTCGCCGGCTTCCGCCTGCTGTCTCCGCCGTCCCTCCCCGAGCCGCCCGCGTCGTCCTCCGTGGATTCAGGCTTCCTGATCCAGCTGCAAGAAAATTTCTCTGTTCCGAGGATTCAATAGGCTTGCAGACGGAGCACCAGAAGCCAGATTCTACTAGCACTGGTGCAAAACAGAACAGCTCAAGTGATGATAACTCAAGCTCAACAGATGGCCCACCCGTCCTAACTATTTTGGCTGGTATCATTGTGTTCCTTCTAGTCTTGTGGGTTATCGGATCGCTCTTCACCTGGATTGCTGGTTTGGTCTTTGGCGCTGCAAAATCTTAGAAGTTCAAATTTTAGGATAATTCTGCACCTTTTTAGTTGTACATACTTCGGTCCAATTGTATGCCAATCTTGGATAAATTGCACTTGATGGTTTCATTCTTAAGTGTTGAACAACTGCTTCATGGTGTTGTA  A        AAAAAAAAAAAAAAAAACACT                  ]
[-] EMBL CF282361             [                                                           CGGGCTGTCCGAACCCCCTCGCCGGCTTCCGCCTGCTGTCTCCGCCGTCCCTCCCCGAGCCGCCCGCGTCGTCCTCCGTGGATTCAGGCTTCCTGATCCAGCTGCAAGAAAATTTCTCTGTTCCGAGGATTCAATAGGCTTGCAGACGGAGCACCAGAAGCCAGATTTTACTAGCACTGGTGCAAAACAGAACAGCTCAAGTGATGATAACTCAAGCTCAACAGATGGCCCACCCGTCCTAACTATTTTGGCTGGTATCATTGTGTTCCTTCTAGTCTTGTGGGTTATCGGATCGCTCTTCACCTGGATTGCTGGTTTGGTCTTTGGCGCTGCAAAATCTTAGAAGTTCAAATTTTAGGATAATTCTGCACCTTTTTAGTTGTACATACTTCGGTCCAATTGTATGCCAATCTTGGATAAATTGCACTTGATGGTTTCATTCTTAAGTGTTGAACAACTGCTTCATGGTGTTGTA  A        AAAAA                                  ]
[+] EMBL AU029294             [                                                                            CTCGCC GCTTCCGCCTGCTGTCTCCGCCGTCCCTCCCCGAGCCGCCCGCGTCGTCCTCCGTGGATTCAGGCTTCCTGATCCAGNTGCAAGAAAATTTCTCTGTTTCGAGGATTCAATAGGCTTGCAGACGGAGCACCAGAAGCCAGATTCTACTAGCACTGGTGCAAAACAGAACAGCTCAAGTGATGATAACTCAAGCTCAACAGATGGCCCACCCGTCCTAACTATTTTGGCTGGTATCATTGTGTTCCTTCTAGTCTTGTGGGTTATCGGATCGCTCTTCACCTGGATTGCTGGTTTGGTCTTTGGCGCTGCAAAATCTTAGAAGTTCAAATTTTAGGATAATTCTGCACCTTTTTAGTTGTACATACTTCGGTCCAATTGTATGCCAATCTTGGATAAATTGCACTTGATGGTTTCATTCTTAAGTGTTGAACAACTGCTTCATGGTGTTGTACCATTGTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_10549#1
GGCCGTTGGGCGCCATGGCGGCCATCTTCCCCCACCTCGCCTCGACTCTTCCGCTTCTCC
GGGCTGTCCGAACCCCTCGCCGGCTTCCGCCTGCTGTCTCCGCCGTCCCTCCCCGAGCCG
CCCGCGTCGTCCTCCGTGGATTCAGGCTTCCTGATCCAGCTGCAAGAAAATTTCTCTGTT
CCGAGGATTCAATAGGCTTGCAGACGGAGCACCAGAAGCCAGATTCTACTAGCACTGGTG
CAAAACAGAACAGCTCAAGTGATGATAACTCAAGCTCAACAGATGGCCCACCCGTCCTAA
CTATTTTGGCTGGTATCATTGTGTTCCTTCTAGTCTTGTGGGTTATCGGATCGCTCTTCA
CCTGGATTGCTGGTTTGGTCTTTGGCGCTGCAAAATCTTAGAAGTTCAAATTTTAGGATA
ATTCTGCACCTTTTTAGTTGTACATACTTCGGTCCAATTGTATGCCAATCTTGGATAAAT
TGCACTTGATGGTTTCATTCTTAAGTGTTGAACAACTGCTTCATGGTGTTGTAAAAAAAA
AAAAAAAAAAACACTAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10549#0      CCATTTCCCCACCTCGATTACTCGATTGCGCCGGTTTTAGGCTCCCTTCTCTCTCCAGTC 60
consensus_10549#1      ------------------------------------------------------------
                                                                                   

consensus_10549#0      TCCACCTCTTCGGCCGTTGGGCGCCATGGCGGCCATCTTCCCCCACCTCGCCTCGACTCT 120
consensus_10549#1      -----------GGCCGTTGGGCGCCATGGCGGCCATCTTCCCCCACCTCGCCTCGACTCT 49
                                  *************************************************

consensus_10549#0      TCCGCTTCTCCGGGCTGTCCGAACCCCTCGCCGGCTTCCGCCTGCTGTCTCCGCCGTCCC 180
consensus_10549#1      TCCGCTTCTCCGGGCTGTCCGAACCCCTCGCCGGCTTCCGCCTGCTGTCTCCGCCGTCCC 109
                       ************************************************************

consensus_10549#0      TCCCCGAGCCGCCCGCGTCGTCCTCCGTGGATTCAGGCTTCCTGATCCAGCTGCAAGAAA 240
consensus_10549#1      TCCCCGAGCCGCCCGCGTCGTCCTCCGTGGATTCAGGCTTCCTGATCCAGCTGCAAGAAA 169
                       ************************************************************

consensus_10549#0      ATTTCTCTGTTTCGAGGATTCAATAGGCTTGCAGACGGAGCACCAGAAGCCAGATTCTAC 300
consensus_10549#1      ATTTCTCTGTTCCGAGGATTCAATAGGCTTGCAGACGGAGCACCAGAAGCCAGATTCTAC 229
                       *********** ************************************************

consensus_10549#0      TAGCACTGGTGCAAAACAGAACAGCTCAAGTGATGATAACTCAAGCTCAACAGATGGCCC 360
consensus_10549#1      TAGCACTGGTGCAAAACAGAACAGCTCAAGTGATGATAACTCAAGCTCAACAGATGGCCC 289
                       ************************************************************

consensus_10549#0      ACCCGTCCTAACTATTTTGGCTGGTATCATTGTGTTCCTTCTAGTCTTGTGGGTTATCGG 420
consensus_10549#1      ACCCGTCCTAACTATTTTGGCTGGTATCATTGTGTTCCTTCTAGTCTTGTGGGTTATCGG 349
                       ************************************************************

consensus_10549#0      ATCGCTCTTCACCTGGATTGCTGGTTTGGTCTTTGGCGCTGCAAAATCTTAGAAGTTCAA 480
consensus_10549#1      ATCGCTCTTCACCTGGATTGCTGGTTTGGTCTTTGGCGCTGCAAAATCTTAGAAGTTCAA 409
                       ************************************************************

consensus_10549#0      ATTTTAGGATAATTCTGCACCTTTTTAGTTGTACATACTTCGGTCCAATTGTATGCCAAT 540
consensus_10549#1      ATTTTAGGATAATTCTGCACCTTTTTAGTTGTACATACTTCGGTCCAATTGTATGCCAAT 469
                       ************************************************************

consensus_10549#0      CTTGGATAAATTGCACTTGATGGTTTCATTCTTAAGTGTTGAACAACTGCTTCATGGTGT 600
consensus_10549#1      CTTGGATAAATTGCACTTGATGGTTTCATTCTTAAGTGTTGAACAACTGCTTCATGGTGT 529
                       ************************************************************

consensus_10549#0      TGTACCATTGTTTCCAGCTGTGCCTTGGGTATTGCCTTTTCATAAAAAAAAAAAA 655
consensus_10549#1      TGTAAAAAAAAAAAAAAAAAAACACTAAAAA----------AAAAAAAAAAAAA- 573
                       ****  *        *      *  *    *          * ***********