These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10549#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 655 fasta sequence [CCATTTCCCCACCTCGATTACTCGATTGCGCCGGTTTTAGGCTCCCTTCTCTCTCCAGTCTCCACCTCTTCGGCCGTTGGGCGCCATGGCGGCCATCTTCCCCCACCTCGCCTCGACTCTTCCGCTTCTCCGGGCTGTCCGAACCCCTCGCCGGCTTCCGCCTGCTGTCTCCGCCGTCCCTCCCCGAGCCGCCCGCGTCGTCCTCCGTGGATTCAGGCTTCCTGATCCAGCTGCAAGAAAATTTCTCTGTTTCGAGGATTCAATAGGCTTGCAGACGGAGCACCAGAAGCCAGATTCTACTAGCACTGGTGCAAAACAGAACAGCTCAAGTGATGATAACTCAAGCTCAACAGATGGCCCACCCGTCCTAACTATTTT-GGCTGGTATCATTGT-GTTCCTTCTAGTCTTGTGGGTTATCGGATCGCTCTTC-ACCTGGATTGCTGGTTTGGTCTTTGGCGCTGCAAAATCTTAGAAGTTCAAATTTTAGGATAATTCTGCACCTTTTTAGTTGTACATACTTCGGTCCAATTGTATGCCAATCTTGGATAAATTGCACTTGATGGTTTCATTCTTAAGTGTTGAACAACTGCTTCATGGTGTTGTACCATTGTTTCCAGCTGTGCCTTGGGTATTGCCTTTTCATAAAAAAAAAAAA] [+] EMBL C73989 [CCATTTCCCCACCTCGATTACTCGATTGCGCCGGTTTTAGGCTCCCTTCTCTCTCCAGTCTCCACCTCTTCGGCCGTTGGGCGCCATGGCGGCCATCTTCCCCCACCTCGCCTCGACTCTTCCGCTTCTCCGGGCTGTCCGAACCCCTCGCCGGCTTCCGCCTGCTGTCTCCGCCGTCCCTCCCCGAGCCGCCCGCGTCGTCCTCCGTGGATTCAGGCTTCCTGATCCAGCTGCAAGAAAATTTCTCTGTTTCGAGGATTCAATAGGCTTGCAGACGGAGCACCAGAAGCCAGATTCTACTAGCACTGGTGCAAAACAGAACAGCTCAAGTGATGATAACTCAAGCTCAACAGATGGCCCACCCGTCCTAACTATTTTNGGCTGGTATCATTGTGGTTCCTTCTAGTCTTGTGGGTAATCGGATCGGTTTTCAACCTGGgatg ] [+] EMBL AK063116 [ CGTTGGGCGCCATGGCGGCCATCTTCCCCCACCTCGCCTCGACTCTTCCGCTTCTCCGGGCTGTCCGAACCCCTCGCCGGCTTCCGCCTGCTGTCTCCGCCGTCCCTCCCCGAGCCGCCCGCGTCGTCCTCCGTGGATTCAGGCTTCCTGATCCAGCTGCAAGAAAATTTCTCTGTTTCGAGGATTCAATAGGCTTGCAGACGGAGCACCAGAAGCCAGATTCTACTAGCACTGGTGCAAAACAGAACAGCTCAAGTGATGATAACTCAAGCTCAACAGATGGCCCACCCGTCCTAACTATTTT GGCTGGTATCATTGT GTTCCTTCTAGTCTTGTGGGTTATCGGATCGCTCTTC ACCTGGATTGCTGGTTTGGTCTTTGGCGCTGCAAAATCTTAGAAGTTCAAATTTTAGGATAATTCTGCACCTTTTTAGTTGTACATACTTCGGTCCAATTGTATGCCAATCTTGGATAAATTGCACTTGATGGTTTCATTCTTAAGTGTTGAACAACTGCTTCATGGTGTTGTACCATTGTTTCCAGCTGTGCCTTGGGTATTGCCTT ] [+] EMBL AU174707 [ TCCCCCACCTCGCCTCGACTCTTCCGCTTCTCCGGGCTGTCCGAACCCCTCGCCGGCTTCCGCCTGCTGTCTCCGCCGTCCCTCCCCGAGCCGCCCGCGTCGTCCTCCGTGGATTCAGGCTTCCTGATCCAGCTGCAAGAAAATTTCTCTGTTTCGAGGATTCAATAGGCTTGCAGACGGAGCACCAGAAGCCAGATTCTACTAGCACTGGTGCAAAACAGAACAGCTCAAGTGATGATAACTCAAGCTCAACAGATGGCCCACCCGTCCTAACTATTTT GGCTGGTATCATTGT GTTCCTTCTAGTCTTGTGGGTTATCGGATCGCTCTTC ACCTGGATTGCTGGTTTGGTCTTTGGCGCTGCAAAATCTTAGAAGTTCAAATTTT ] [+] EMBL AU174706 [ CCTCCGTGGATTCAGGCTTCCTGATCCAGCTGCAAGAAAATTTCTCTGTTTCGAGGATTCAATAGGCTTGCAGACGGAGCACCAGAAGCCAGATTNTACTAGCACTGGTGCAAAACAGAACAGCTCAAGTGATGATAACTCAAGCTCAACAGATGGCCCACCCGTCCTAACTATTTT GGCTGGTATCATTGT GTTCCTTCTAGTCTTGTGGGTTATCGGATCGCTCTTC ACCTGGATTGCTGGTTTGGTCTTTGGCGCTGCAAAATCTTAGAAGTTCAAATTTTAGGATAATTCTGCACCTTTTTAGTTGTACATACTTCGGTCCAATTGTATGCCAATCTTGGATAAATTGCACTTGATGGTTTCATTCTTAAGTGTTGAACAACTGCTTCATGGTGTTGTACCATTGTTTCCAGCTGTGCCTTGGGTATTGCCTTTTCATAAAAAAAAAAAA] consensusID : consensus_10549#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 573 fasta sequence [GGCCGTTGGGCGCCATGGCGGCCATCTTCCCCCACCTCGCCTCGACTCTTCCGCTTCTCCGGGCTGTCCGAA-CCCCTCGCCGGCTTCCGCCTGCTGTCTCCGCCGTCCCTCCCCGAGCCGCCCGCGTCGTCCTCCGTGGATTCAGGCTTCCTGATCCAGCTGCAAGAAAATTTCTCTGTTCCGAGGATTCAATAGGCTTGCAGACGGAGCACCAGAAGCCAGATTCTACTAGCACTGGTGCAAAACAGAACAGCTCAAGTGATGATAACTCAAGCTCAACAGATGGCCCACCCGTCCTAACTATTTTGGCTGGTATCATTGTGTTCCTTCTAGTCTTGTGGGTTATCGGATCGCTCTTCACCTGGATTGCTGGTTTGGTCTTTGGCGCTGCAAAATCTTAGAAGTTCAAATTTTAGGATAATTCTGCACCTTTTTAGTTGTACATACTTCGGTCCAATTGTATGCCAATCTTGGATAAATTGCACTTGATGGTTTCATTCTTAAGTGTTGAACAACTGCTTCATGGTGTTGTA--A--------AAAAAAAAAAAAAAAAACACTAAAAAAAAAAAAAAAAAA] [+] EMBL CF282362 [GGCCGTTGGGCGCCATGGCGGCCATCTTCCCCCACCTCGCCTCGACTCTTCCGCTTCTCCGGGCTGTCCGAA CCCCTCGCCGGCTTCCGCCTGCTGTCTCCGCCGTCCCTCCCCGAGCCGCCCGCGTCGTCCTCCGTGGATTCAGGCTTCCTGATCCAGCTGCAAGAAAATTTCTCTGTTCCGAGGATTCAATAGGCTTGCAGACGGAGCACCAGAAGCCAGATTCTACTAGCACTGGTGCAAAACAGAACAGCTCAAGTGATGATAACTCAAGCTCAACAGATGGCCCACCCGTCCTAACTATTTTGGCTGGTATCATTGTGTTCCTTCTAGTCTTGTGGGTTATCGGATCGCTCTTCACCTGGATTGCTGGTTTGGTCTTTGGCGCTGCAAAATCTTAGAAGTTCAAATTTTAGGATAATTCTGCACCTTTTTAGTTGTACATACTTCGGTCCAATTGTATGCCAATCTTGGATAAATTGCACTTGATGGTTTCATTCTTAAGTGTTGAACAACTGCTTCATGGTGTTGTA A AAAAAAAAAAAAAAAAACACT ] [-] EMBL CF282361 [ CGGGCTGTCCGAACCCCCTCGCCGGCTTCCGCCTGCTGTCTCCGCCGTCCCTCCCCGAGCCGCCCGCGTCGTCCTCCGTGGATTCAGGCTTCCTGATCCAGCTGCAAGAAAATTTCTCTGTTCCGAGGATTCAATAGGCTTGCAGACGGAGCACCAGAAGCCAGATTTTACTAGCACTGGTGCAAAACAGAACAGCTCAAGTGATGATAACTCAAGCTCAACAGATGGCCCACCCGTCCTAACTATTTTGGCTGGTATCATTGTGTTCCTTCTAGTCTTGTGGGTTATCGGATCGCTCTTCACCTGGATTGCTGGTTTGGTCTTTGGCGCTGCAAAATCTTAGAAGTTCAAATTTTAGGATAATTCTGCACCTTTTTAGTTGTACATACTTCGGTCCAATTGTATGCCAATCTTGGATAAATTGCACTTGATGGTTTCATTCTTAAGTGTTGAACAACTGCTTCATGGTGTTGTA A AAAAA ] [+] EMBL AU029294 [ CTCGCC GCTTCCGCCTGCTGTCTCCGCCGTCCCTCCCCGAGCCGCCCGCGTCGTCCTCCGTGGATTCAGGCTTCCTGATCCAGNTGCAAGAAAATTTCTCTGTTTCGAGGATTCAATAGGCTTGCAGACGGAGCACCAGAAGCCAGATTCTACTAGCACTGGTGCAAAACAGAACAGCTCAAGTGATGATAACTCAAGCTCAACAGATGGCCCACCCGTCCTAACTATTTTGGCTGGTATCATTGTGTTCCTTCTAGTCTTGTGGGTTATCGGATCGCTCTTCACCTGGATTGCTGGTTTGGTCTTTGGCGCTGCAAAATCTTAGAAGTTCAAATTTTAGGATAATTCTGCACCTTTTTAGTTGTACATACTTCGGTCCAATTGTATGCCAATCTTGGATAAATTGCACTTGATGGTTTCATTCTTAAGTGTTGAACAACTGCTTCATGGTGTTGTACCATTGTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10549#0 CCATTTCCCCACCTCGATTACTCGATTGCGCCGGTTTTAGGCTCCCTTCTCTCTCCAGTC 60 consensus_10549#1 ------------------------------------------------------------ consensus_10549#0 TCCACCTCTTCGGCCGTTGGGCGCCATGGCGGCCATCTTCCCCCACCTCGCCTCGACTCT 120 consensus_10549#1 -----------GGCCGTTGGGCGCCATGGCGGCCATCTTCCCCCACCTCGCCTCGACTCT 49 ************************************************* consensus_10549#0 TCCGCTTCTCCGGGCTGTCCGAACCCCTCGCCGGCTTCCGCCTGCTGTCTCCGCCGTCCC 180 consensus_10549#1 TCCGCTTCTCCGGGCTGTCCGAACCCCTCGCCGGCTTCCGCCTGCTGTCTCCGCCGTCCC 109 ************************************************************ consensus_10549#0 TCCCCGAGCCGCCCGCGTCGTCCTCCGTGGATTCAGGCTTCCTGATCCAGCTGCAAGAAA 240 consensus_10549#1 TCCCCGAGCCGCCCGCGTCGTCCTCCGTGGATTCAGGCTTCCTGATCCAGCTGCAAGAAA 169 ************************************************************ consensus_10549#0 ATTTCTCTGTTTCGAGGATTCAATAGGCTTGCAGACGGAGCACCAGAAGCCAGATTCTAC 300 consensus_10549#1 ATTTCTCTGTTCCGAGGATTCAATAGGCTTGCAGACGGAGCACCAGAAGCCAGATTCTAC 229 *********** ************************************************ consensus_10549#0 TAGCACTGGTGCAAAACAGAACAGCTCAAGTGATGATAACTCAAGCTCAACAGATGGCCC 360 consensus_10549#1 TAGCACTGGTGCAAAACAGAACAGCTCAAGTGATGATAACTCAAGCTCAACAGATGGCCC 289 ************************************************************ consensus_10549#0 ACCCGTCCTAACTATTTTGGCTGGTATCATTGTGTTCCTTCTAGTCTTGTGGGTTATCGG 420 consensus_10549#1 ACCCGTCCTAACTATTTTGGCTGGTATCATTGTGTTCCTTCTAGTCTTGTGGGTTATCGG 349 ************************************************************ consensus_10549#0 ATCGCTCTTCACCTGGATTGCTGGTTTGGTCTTTGGCGCTGCAAAATCTTAGAAGTTCAA 480 consensus_10549#1 ATCGCTCTTCACCTGGATTGCTGGTTTGGTCTTTGGCGCTGCAAAATCTTAGAAGTTCAA 409 ************************************************************ consensus_10549#0 ATTTTAGGATAATTCTGCACCTTTTTAGTTGTACATACTTCGGTCCAATTGTATGCCAAT 540 consensus_10549#1 ATTTTAGGATAATTCTGCACCTTTTTAGTTGTACATACTTCGGTCCAATTGTATGCCAAT 469 ************************************************************ consensus_10549#0 CTTGGATAAATTGCACTTGATGGTTTCATTCTTAAGTGTTGAACAACTGCTTCATGGTGT 600 consensus_10549#1 CTTGGATAAATTGCACTTGATGGTTTCATTCTTAAGTGTTGAACAACTGCTTCATGGTGT 529 ************************************************************ consensus_10549#0 TGTACCATTGTTTCCAGCTGTGCCTTGGGTATTGCCTTTTCATAAAAAAAAAAAA 655 consensus_10549#1 TGTAAAAAAAAAAAAAAAAAAACACTAAAAA----------AAAAAAAAAAAAA- 573 **** * * * * * * *********** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||