These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10561#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1280 fasta sequence [ACTCGCCGAGCCAACTCCAATCCCCAAACCACCAGATCGAATCGCGGTTGCCGCGGCGGAGGCGAGGAGGAAGACGAGGATGCCGGCGGCGGCGGCGGCGAAGACGCTGGTGCCAGCCCGCGGCGGCGGCGACATGGAGGAGCCGCTGCTGGCGGAGTCGTCGGATCGCTTCTCGATGTTCCCGATCAGGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCTGGACGGCGGAGGAGGTGGACCTCTCCGCCGACGCGCGCCACTGGGACGCCGCGCTGTCGCCCGACGAGCGCCACTTCGTCTCCCACGTGCTCGCCTTCTTCGCGGCCTCCGATGGCATCGTGCTCGAGAACCTCGCCTCCAGGTTCATGTCCGACGTGCAGGTCGCCGAGGCTCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACTCGCTTCTGCTCGAGACGTACATCCGCGACGACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCGTCCCCGCCGTGCGCCGCAAGGCCGACTGGGCCATGCGATGGATCGACGGCGGCGAGCGCTTCGCCGAGCGGCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGTTCATTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTCCACTGCGACTTCGCCTGCCTCCTCTACGACCTCCTCCGCGGCAAGCTCGACGAGTCACGCGTCCAGGAGATCGTCGCCGACGCCGTGGACATCGAGAGGGAG-TTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGGATGAACGGCGAGCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGGCTGCTCATGGCGCTCGGGTGCAAGAAGATGTACAACGTCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTACCAGAAGGCGTCCGTAATGTCCAGCCTCAACGGCGGCGCTTCTTGCAACCATGTCTTCAGCATCGACGAGGACTTCTGATCACATCGACTGCCATAGTAGTATTAAAGTAGAAATACATGTTCTCCCAAAGTGTTC-GTATGGTTTCTTGTTTTATTTGTTCTGGTTTGACATGTACTCCTGTAATGAATCAAGTAAAAAGTTTCTCAATACATCAACTGGTCATTGCCTGTAAAAAAAAAAA] [+] EMBL AK073063 [ACTCGCCGAGCCAACTCCAATCCCCAAACCACCAGATCGAATCGCGGTTGCCGCGGCGGAGGCGAGGAGGAAGACGAGGATGCCGGCGGCGGCGGCGGCGAAGACGCTGGTGCCAGCCCGCGGCGGCGGCGACATGGAGGAGCCGCTGCTGGCGGAGTCGTCGGATCGCTTCTCGATGTTCCCGATCAGGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCTGGACGGCGGAGGAGGTGGACCTCTCCGCCGACGCGCGCCACTGGGACGCCGCGCTGTCGCCCGACGAGCGCCACTTCGTCTCCCACGTGCTCGCCTTCTTCGCGGCCTCCGATGGCATCGTGCTCGAGAACCTCGCCTCCAGGTTCATGTCCGACGTGCAGGTCGCCGAGGCTCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACTCGCTTCTGCTCGAGACGTACATCCGCGACGACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCGTCCCCGCCGTGCGCCGCAAGGCCGACTGGGCCATGCGATGGATCGACGGCGGCGAGCGCTTCGCCGAGCGGCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGTTCATTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTCCACTGCGACTTCGCCTGCCTCCTCTACGACCTCCTCCGCGGCAAGCTCGACGAGTCACGCGTCCAGGAGATCGTCGCCGACGCCGTGGACATCGAGAGGGAG TTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGGATGAACGGCGAGCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGGCTGCTCATGGCGCTCGGGTGCAAGAAGATGTACAACGTCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTACCAGAAGGCGTCCGTAATGTCCAGCCTCAACGGCGGCGCTTCTTGCAACCATGTCTTCAGCATCGACGAGGACTTCTGATCACATCGACTGCCATAGTAGTATTAAAGTAGAAATACATGTTCTCCCAAAGTGTTC GTATGGTTTCTTGTTTTATTTGTTCTGGTTTGACATGTACTCCTGTAATGAATCAAGTAAAAAGTTTCTCAATACATCAACTGGT ] [+] EMBL C27172 [ CAGATCGAATCGCGGTTGCCG GGCGGAGGCGAGGAGGAAGACGAGGATGCCGGCGG GGCGGCGGCGAAGACGTNGGTGCCAGCCCGCGGCGGCGGCGACATGGAGGAGCCGCTGCTGGCGGAGTCGTCGGATCGCTTCTCGATGTTCCCGATCAGGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCTGGACGGCGGAGGAGGTGGACCTCTCCGCCGACGCGCGCCACTGGNACGCCGCGCTGTCGNCCGACGAGCG NACTTCGTCTNCCACGTGCTCGCCTTCTTCGCGGCCTCCGATGGCATCGTGCTCGANAACCTCGCCTNCAGGTTCATGTNCGACGTGCAa ] [+] EMBL AU091285 [ CGAGTCACGCGTCCAGGAGATCGTCGCCGACGCCGTGGACATCGAGAGGGAGCTTC TCTGCGACGCGCTCCCCGTCGCGCTCGTCGGGATGAACGGCGAGCTCATGAGCCAGTNCATCGAGTTCGTCGCCGACCGGCTGCTCATGGCGCTCGGGTGCAAGAAGATGTACAACGTCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTACCAGAAGGCGTCCGTAATGTCCAGCCTCAACGGCGGCGCTTCTTGCAACCATGTCTTCAGCATCGACGAGGACTTCTGATCACATCGACTGCCATAGTAGTATTAAAGTAGAAATACATGTTCTCCCAAAGTGTTC GTATGGTTTCTTGTTTTATTTGTTCTGGTTTGACATGTACTCCTGTAATGAATCAAGTAAAAAGTTTCTCAATAaaaaa ] [+] EMBL AU174212 [ GCGACGCGCTCCCCGTCGCGCTCGTCGGGATGAACGGCGAGCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGGCTGCTCATGGCGCTCGGGTGCAAGAAGATGTACAACGTCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTNTTCGAGAAGCGCGTCGGCGACTACCAGAAGGCGTCCGTAATGTCCAGCCTCAACGGCGGCGCTTCTTGCAACCATGTNTTCAGCATCGACGAGGACTTCTGATCACATCGACTGCCATAGTAGTATTAAAGTAGAAATACATGTTCTCCCAAAGTGTTCNGTATGGTTTCTTGTTTTATTTGTTCTGGTTTGACATGTACTCCTGTAATGAATCAAGTAAAAAGTTTCTCAATACATCAACTGGTCATTGCCTGTAAAAAAAAAAA] consensusID : consensus_10561#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 635 fasta sequence [TTCTGGCTCNAAGAACCGGGGGCTCATGCCGGGAATAAATTTTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCNTGCCTCCTCTACGACCTCCTCCGCGGCAAGCTCGACGAGGGCGCGCGTCCGCGAGATCGTCGCGACGCCGTCGACATCGAGAGGGAGTTNTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCATGGCGCTCGGCTGCAAGAAGATGTACAACGTCGCTAACCCCTTCGACTGGATGGAGCTCATATCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTACCAGAAGGCGTCCGTCATGTCGAGCCTCAACGGCGGCGCCTCCGCCAACCACGTCTTCAGCATCGACGAAGACTTCTGATTTGCCAATCTCCTCGTGTACATCTCCAACCCTCGCAGTCACTTGCTCTCTGCCCCCCNTTACTAGTAGTAGTAGTAATACATGCGCGTGGTGCTCCCTAATGTTATAGTTGGTGTGTTGCTGGTTCTTGTTGGTGATGTATCCTAATGAATTATGAATCCAGTTGTTTAGTATCAAAAA] [+] EMBL AU094851 [TTCTGGCTCNAAGAACCGGGGGCTCATGCCGGGAATAAATTTTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCNTGCCTCCTCTACGACCTCCTCCGCGGCAAGCTCGACGAGGGCGCGCGTCCGCGAGATCGTCGCGACGCCGTCGACATCGAGAGGGAGTTNTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCATGGCGCTCGGCTGCAAGAAGATGTACAACGTCGCTAACCCCTTCGACTGGATGGAGCTCATATCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTACCAGAAGGCGTCCGTCATGTCGAGCCTCAACGGCGGCGCCTCCGCCAACCACGTCTTCAGCATCGACGAAGACTTCTGATTTGCCAATCTCCTCGTGTACATCTCCAACCCTCGCAGTCACTTGCTCTCTGCCCCCCNTTACTAGTAGTAGTAGTAATACATGCGCGTGGTGCTCCCTAATGTTATAGTTGGTGTGTTGCTGGTTCTTGTTGGTGATGTATCCTAATGAATTATGAATCCAGTTGTTTAGTATCAAAAA] consensusID : consensus_10561#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 397 fasta sequence [AAATCCCCATCCAGAAACCACCCCGATCCGCGACGAAGATGCCGGCCGCGCCGACGCTGGTGCCCGCCTGCGACCTGGAGGAGCCGCTGCTGGCGGAGTCGTCCGAGCGATTCTCGATGTTCCCGATCAGGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCTGGACGGCGGAGGAGGTGGACCTCTCCGCCGACGCGCGCCACTGGGACGCCGCGCTGTCCCCCGACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCCTNCAGGTTCATGTCCGACGTGCAGGTCGCCGAGGCGCGCGCCTTCTACGGATTCCAGATCGCCATCGAGAACATCCACTCTTA] [+] EMBL C91841 [AAATCCCCATCCAGAAACCACCCCGATCCGCGACGAAGATGCCGGCCGCGCCGACGCTGGTGCCCGCCTGCGACCTGGAGGAGCCGCTGCTGGCGGAGTCGTCCGAGCGATTCTCGATGTTCCCGATCAGGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCTGGACGGCGGAGGAGGTGGACCTCTCCGCCGACGCGCGCCACTGGGACGCCGCGCTGTCCCCCGACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCCTNCAGGTTCATGTCCGACGTGCAGGTCGCCGAGGCGCGCGCCTTCTACGGATTCCAGATCGCCATCGAGAACATCCACTCTTA] consensusID : consensus_10561#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 243 fasta sequence [NGNCGGTCNNCCGCGCCGAAGGCNAGGAGGAAGACCNGCGATGCCGGCGCGGCGGCGGCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACTCGCTTCTNCTCGAAACGTACATCCGCAACGACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCGTCCCCGCCGTGCGCCGCAAGNCGGACTGGGCCATGCAATGGATCGACGGCGGCGAGCGTTTCGCCGAGC] [+] EMBL OSS1247A [NGNCGGTCNNCCGCGCCGAAGGCNAGGAGGAAGACCNGCGATGCCGGCGCGGCGGCGGCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACTCGCTTCTNCTCGAAACGTACATCCGCAACGACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCGTCCCCGCCGTGCGCCGCAAGNCGGACTGGGCCATGCAATGGATCGACGGCGGCGAGCGTTTCGCCGAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10561#1 ------------------------------------------------------------ consensus_10561#3 ------------------------------------------------------------ consensus_10561#0 ACTCGCCGAGCCAACTCCAATCCCCAAACCACCAGATCGAATCGCGGTTGCCGCGGCGGA 60 consensus_10561#2 ------------------------------------------------------------ consensus_10561#1 ------------------------------------------------------------ consensus_10561#3 ------------------------------------------------------------ consensus_10561#0 GGCGAGGAGGAAGACGAGGATGCCGGCGGCGGCGGCGGCGAAGACGCTGGTGCCAGCCCG 120 consensus_10561#2 ------------------------------------------------------------ consensus_10561#1 ------------------------------------------------------------ consensus_10561#3 ------------------------------------------------------------ consensus_10561#0 CGGCGGCGGCGACATGGAGGAGCCGCTGCTGGCGGAGTCGTCGGATCGCTTCTCGATGTT 180 consensus_10561#2 ------------------------------------------------------------ consensus_10561#1 ------------------------------------------------------------ consensus_10561#3 ------------------------------------------------------------ consensus_10561#0 CCCGATCAGGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCTGGAC 240 consensus_10561#2 ------------------------------------------------------------ consensus_10561#1 ------------------------------------------------------------ consensus_10561#3 ------------------------------------------------------------ consensus_10561#0 GGCGGAGGAGGTGGACCTCTCCGCCGACGCGCGCCACTGGGACGCCGCGCTGTCGCCCGA 300 consensus_10561#2 ------------------------------------------------------------ consensus_10561#1 ------------------------------------------------------------ consensus_10561#3 ------------------------------------------------------------ consensus_10561#0 CGAGCGCCACTTCGTCTCCCACGTGCTCGCCTTCTTCGCGGCCTCCGATGGCATCGTGCT 360 consensus_10561#2 ------------------------------------------------------------ consensus_10561#1 ------------------------------------------------------------ consensus_10561#3 ------------------------------------------------------------ consensus_10561#0 CGAGAACCTCGCCTCCAGGTTCATGTCCGACGTGCAGGTCGCCGAGGCTCGCGCCTTCTA 420 consensus_10561#2 ------------------------------------------------------------ consensus_10561#1 ------------------------------------------------------------ consensus_10561#3 ------------------------------------------------------------ consensus_10561#0 CGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACTCGCTTCTGCTCGAGAC 480 consensus_10561#2 ------------------------------------------------------------ consensus_10561#1 ------------------------------------------------------------ consensus_10561#3 ------------------------------------------------------------ consensus_10561#0 GTACATCCGCGACGACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCGTCCCCGC 540 consensus_10561#2 ------------------------------------------------------------ consensus_10561#1 ------------------------------------------------------------ consensus_10561#3 ------------------------------------------------------------ consensus_10561#0 CGTGCGCCGCAAGGCCGACTGGGCCATGCGATGGATCGACGGCGGCGAGCGCTTCGCCGA 600 consensus_10561#2 ------------------------------------------------------------ consensus_10561#1 ------------------------------------------------------------ consensus_10561#3 ------------------------------------------------------------ consensus_10561#0 GCGGCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGTTCATTCTGCGCCAT 660 consensus_10561#2 ------------------------------------------------------------ consensus_10561#1 TTCTGGCTCNAAGAACCGGGGGCTCATGCCGGGAATAAATTT-TCCAACGAGCTCATCTC 59 consensus_10561#3 ------------------------------------------------------------ consensus_10561#0 CTTCTGGCTCAAGAAGCGCGGACTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTC 720 consensus_10561#2 ------------------------------------------------------------ consensus_10561#1 CCGCGACGAGGGCCTGCACTGCGACTTCGCNTG-CCTCCTCTACGACCTCCTCCGCGGCA 118 consensus_10561#3 ------------------------------------------------------------ consensus_10561#0 CCGCGACGAGGGTCTCCACTGCGACTTCGCCTG-CCTCCTCTACGACCTCCTCCGCGGCA 779 consensus_10561#2 -------AAATCCCCATCCAGAAACCACCCCGATCCGCGACGAAGATGCCGGCCGCGCCG 53 consensus_10561#1 AGCTCGACGAGGGCGCGCGTCCGCGAGA--TCGTCGCG-ACGCCGTCGACATCGAGAGGG 175 consensus_10561#3 -------------------------NGN--CGGTCNN---CCGCGCCGAAGGCNAGGAGG 30 consensus_10561#0 AGCTCGACGAGT-CACGCGTCCAGGAGA--TCGTCGCCGACGCCGTGGACATCGAGAGGG 836 consensus_10561#2 ACGCTGGTGCCCGCCTGCGACCTGGAGGAGCCGCTGCTGGCGGAGTCGTCCGAGCGATTC 113 * * * * * * consensus_10561#1 AGTT-NTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGACC-TCATGAGC 233 consensus_10561#3 AAG--ACCNGCGATGCCGGCGCGGCGGCGGCTA-CGGCTTCCAGATCGCCA-TCGAGAAC 86 consensus_10561#0 AGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGGATGAACGGCGAGC-TCATGAGC 895 consensus_10561#2 TCGATGTTCCCGATCAGGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCG 173 *** * * * * * * * * * consensus_10561#1 CAGTACATCGAGTTCGTCGCCGACCGCCTCCTCATGGCGCTCGGCTGCAAGAAGATGTAC 293 consensus_10561#3 ATCCACTCGGAGAT-GTACTCG--CTTCTNCTCGAAACGTACATCCGCAACGACGTCGAG 143 consensus_10561#0 CAGTACATCGAGTTCGTCGCCGACCGGCTGCTCATGGCGCTCGGGTGCAAGAAGATGTAC 955 consensus_10561#2 TTCTGGACGGCGGAGGAGGTGGACCTCTCCGCCGACGCGCGCCACTGGGACGCCGCGCTG 233 * * * * * * ** * * * consensus_10561#1 AACGTCGCTAACCCCTTCGAC-TGGATGGAGCTCATATCCCTGCAGGGCAAGACCAACTT 352 consensus_10561#3 AAGGACCGCCTCTTCCGCGCCATCGACACCGTCCCCG-CCGTGCGCCGCAAGNCGGACTG 202 consensus_10561#0 AACGTCGCCAACCCGTTCGAC-TGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTT 1014 consensus_10561#2 TCCCCCGACGAGCGCCACTTCATCTCCCACGTGCTCG-CCTTCTTCGCCGCCTCCGACGG 292 * * * * * * ** * * * ** consensus_10561#1 CTTCGAGAAGCGCGTCGGCGACTACCAGAAGGCGTCCGTCATGTCGAGCCTCAACGGCGG 412 consensus_10561#3 GGCCATGCAATGGATCGACGGC--------GGCGAGCGTTTCGCCGAGC----------- 243 consensus_10561#0 CTTCGAGAAGCGCGTCGGCGACTACCAGAAGGCGTCCGTAATGTCCAGCCTCAACGGCGG 1074 consensus_10561#2 CATCGTGCTCGAGAACCTCGCCTNCAGGTTCATGTCCGACGTGCAGGTCGCCGAGGCGCG 352 * * * ** * * ** * * consensus_10561#1 CGCCTCCGCCAACCACGTCTTCAGCATCGACGAAGACTTCTGATTTGCCAATCTCCTCGT 472 consensus_10561#3 ------------------------------------------------------------ consensus_10561#0 CGCTTCTTGCAACCATGTCTTCAGCATCGACGAGGACTTCTGATCACATCGACTGCCATA 1134 consensus_10561#2 CGCCTTCTACGGATTCCAGATCGCCATCGAGAACATCCACTCTTA--------------- 397 consensus_10561#1 GTACATCTCCAACCCTCGCAGTCACTTGCTC----TCTGCCCCCCNTTACTAGTAGTAGT 528 consensus_10561#3 ------------------------------------------------------------ consensus_10561#0 GTAGTATTAAAGTAGAAATACATGTTCTCCCAAAGTGTTCGTATGGTTTCTTGTTTTATT 1194 consensus_10561#2 ------------------------------------------------------------ consensus_10561#1 AGTAATACATGCGCGTGGTGCTCCCTAATGTTATAGTTGGTGTGTTGCTGGTTCTTGTTG 588 consensus_10561#3 ------------------------------------------------------------ consensus_10561#0 TGTTCTGGTTTGACATGTACTCCTGTAATGAATCAAGTAAAAAGTTTCTCAATACATCAA 1254 consensus_10561#2 ------------------------------------------------------------ consensus_10561#1 GTGATGTATCCTAATGAATTATGAATCCAGTTGTTTAGTATCAAAAA 635 consensus_10561#3 ----------------------------------------------- consensus_10561#0 CTGGTCATTGCCTGTAAAAAAAAAAA--------------------- 1280 consensus_10561#2 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||