|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10571#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1162 fasta sequence
[CCGAAAGAAGCAACAACTGCAGAAGTAGAGGGTGTTCTAACACAAAGCGGAACTTCTCCCGATTACAAGGTTGGCAACAGAATAACAGACATCAGCCAAAAAATGGTTGAAGAACTAAAGGAGTCTGTGAAAGAAGAGCAGGCT-GAGAAAAAGGAGGAGGCAGCCAAGGAGAAGCCAGATGAACCACAAGAGATCGTACTGAAAGTCGACATGCACTGCGAAGGATGTGCAAAGAAGGTCGAGAAATCCCTCTTGAGATTTGAAGGAGTCGAAAACGTCAAGGC-TGACAGTCGATCGAAGA-CGGTTGTGGTGAAAAGCAGGGCCGCAGATCCCTCAAAGGTCTGCGAGA-GGGTTCAGAGGAAGACAAAGAGAAGAGTTGAGCTGATTTTCCCTCTTCCTCCACCTCCAGAAGAGGAGAAGAAAGAGGAGGCTCCAGCACCACCTCCAGAAGAAAAGAAAGAGGAGCCACCGAAGACAATAACTGTCATCTTGAAGGTCCAGATGCACTGCGACGCTTGTGCGCAGATTCTGCAAAAGCGTATAAGCAGGACAGAAGGTGTAGAATCGGTCGAGACTGATCTCCTCAACGGCCTAGTGGTCGTCAAAGGGGTGATGGATCCGGCTGTGCTCATCGAAAGCATCCAGCGGAAGACGCGGAGGCCGGCAGTCATCGTCGAAGAGGTGAAGCCGCGGGAGGAGGAGAAGAAGGCAGAGGAGGAAGAGAAGAAGCCAGATGAGGATAAGGCCGACGGCATCGAAGAGATCAAGAAGTATGACTTCTGG-CCGCCCGT-CCAGTACTATGTCGAGTACGTCTACCCATA-CCCGCTACCGCCGCCACCGACGGCACTGGTGTCCGAGGAGTTCAGTGACGAGAACCCGAACGCTTGCACCGTCGCGTGATA-CCATCTGAAGCTGTTCTTTTGCTTAGACGGTGGTTTCTATGCTAGAAATGCATGCTGATATGGTAATAAAATGAGTGGTTTTGAGAACTTGTACAAGATTGTGTTATTAAGTATCATG-AAAAGTGAGCTCGCATTGCTCAATTGACTAGCAAAAGGATGGTACAACCTATTTACCCGGGTTTAGATTTGACACTTGTGCTCGTATTTCTCATTAGAAATATGGTCATAATTTGGTATATTTTAATATAGAAAAAAAAGAT]
[+] EMBL OSS14821A [CCGAAAGAAGCAACAACTGCAGAAGTAGAGGGTGTTCTAACACAAAGCGGAACTTCTCCCGATTACAAGGTTGGCAACAGAATAACAGACATCAGCCAAAAAATGGTTGAAGAACTAAAGGAGTCTGTGAAAGAAGAGCAGGCT GAGAAAAAGGAGGAGGCAGCCAAGGAGAAGCCAGATGAACCACAAGAGATCGTACTGAAAGTCGACATGCACTGCGAAGGATGTNCAAAGAAGGTCGAGAAATCCCTCTTGAGATTTGAAGGAGTCGAAAACGTCAAGGCTTGACAGTCGATCGAAGACCGGTTGTNGTGAAAAGCAGGGCCGCAGATCCCTCAAAGGTCTTCGAGAGGGGTTCAGAGGAAGCCAAAGAG ]
[+] EMBL AK070579 [ GAAGCAACAACTGCAGAAGTAGAGGGTGTTCTAACACAAAGCGGAACTTCTCCCGATTACAAGGTTGGCAACAGAATAACAGACATCAGCCAAAAAATGGTTGAAGAACTAAAGGAGTCTGTGAAAGAAGAGCAGGCT GAGAAAAAGGAGGAGGCAGCCAAGGAGAAGCCAGATGAACCACAAGAGATCGTACTGAAAGTCGACATGCACTGCGAAGGATGTGCAAAGAAGGTCGAGAAATCCCTCTTGAGATTTGAAGGAGTCGAAAACGTCAAGGC TGACAGTCGATCGAAGA CGGTTGTGGTGAAAAGCAGGGCCGCAGATCCCTCAAAGGTCTGCGAGA GGGTTCAGAGGAAGACAAAGAAAAGAGTTGAGCTGATTTTCCCTCTTCCTCCACCTCCAGAAGAGGAGAAGAAAGAGGAGGCTCCAGCACCACCTCCAGAAGAAAAGAAAGAGGAGCCACCGAAGACAATAACTGTCATCTTGAAGGTCCAGATGCACTGCGACGCTTGTGCGCAGATTCTGCAAAAGCGTATAAGCAGGACAGAAGGTGTAGAATCGGTCGAGACTGATCTCCTCAACGGCCTAGTGGTCGTCAAAGGGGTGATGGATCCGGCTGTGCTCATCGAAAGCATCCAGCGGAAGACGCGGAGGCCGGCAGTCATCGTCGAAGAGGTGAAGCCGCGGGAGGAGGAGAAGAAGGCAGAGGGGGAAGAGAAGAAGCCAGATGAGGATAAGGCCGACGGCATCGAAGAGATCAAGAAGTATGACTTCTGG CCGCCCGT CCAGTACTATGTCGAGTACGTCTACCCATA CCCGCTACCGCCGCCACCGACGGCACTGGTGTCCGAGGAGTTCAGTGACGAGAACCCGAACGCTTGCACCGTCGCGTGATA CCATCTGAAGCTGTTCTTTTGCTTAGACGGTGGTTTCTATGCTAGAAATGCATGCTGATATGGTAATAAAATGAGTGGTTTTGAGAACTTGTACAAGATTGTGTTATTAAGTATCATG AAAAGTGAGCTCGCATTGCTCAATTGACTAGCTCTCCTATGGTACAACCTATTTACCCGGGTTTAGATTTGACACTTGTGCTCGTATTTCTCATTAGAAATATGGTCATAATTTGGTATATTTTAATATAGAAAAAAAAGAT]
[+] EMBL CB683551 [ AGGGTGTTCTAACACAAAGCGGAACTTCTCCCGATTACAAGGTTGGCAACAGAATAACAGACATCAGCCAAAAAATGGTTGAAGAACTAAAGGAGTCTGTGAAAGAAGAGCATGCT GAGAAAAAGGAGGAGGCAGCCAAGGAGAAGCCAGATGAACCACAAGAGATCGTACTGAAAGTCGACATGCACTGCGAAGGATGTGCAAAGAAGGTCGAGAAATCCCTCTTGAGATTTGAAGGAGTCGAAAACGTCAAGGC TGACAGTCGATCGAAGA CGGTTGTGGTGAAAAGCAGGGCCGCAGATCCCTCAAAGGTCTGCGAGA GGGTTCAGAGGAAGACAAAGAGAAGAGTTGAGCTGATTTTCCCTCTTCCTCCACCTCCAGAAGAGGAGAAGAAAGAGGAGGCTCCAGCACCACCTCCAGAAGAAAAGAAAGAGGAGCCACCGAAGACAATAACTGTCATCTTGAAGGTCCAGATGCACTGCGACGCTTGTGCGCAGATTCTGCAAAAGCGTATAAGCAGGACAGAAGGTGTACAATCGGTCGAGACTGATCTCCTCAACGGCCTACTGGTCGTCAAAGGGGTGATGGATCCGGCTGTGCTCATCGAAAGCATCCAGCGGAAGACGCGGAGGCCGGCA ]
[+] EMBL AU175014 [ GAATAACAGACATCAGCCAAAAAATGGTTGAAGAACTAAAGGAGTCTGTGAAAGAAGAGCAGGCTNGAGAAAAAGGAGGAGGCAGCCAAGGAGAAGCCAGATGAACCACAAGAGATCGTACTGAAAGTCGACATGCACTGCGAAGGATGTGCAAAGAAGGTCGAGAAATCCCTCTTGAGATTTGAAGGAGTCGAAAACGTCAAGGC TGACAGTCGATCGAAGA CGGTTGTGGTGAAAAGCAGGGCCGCAGATCCCTCAAAGGTCTGCGAGA GGGTTCAGAGGAAGACAAAGAGAAGAGTTGAGCTGATTTTCCCTCTTCCTCCACCTCCAGAAGAGGAGAAGAAAGAGGAGGCTCCAGCACCACCTCCAGAAGAAAAGAAAGAGGAGCCACCGAAGACAATAACT ]
[-] EMBL CB683083 [ AGGGCCGCAGATCCCTCAAAGGTCTGCGAGA GGGTTCAGAGGAAGACAAAGAGAAGAGTTGAGCTGATTTTCCCTCTTCCTCCACCTCCAGAAGAGGAGAAGAAAGAGGAGGCTCCAGCACCACCTCCAGAAGAAAAGAAAGAGGAGCCACCGAAGACAATAACTGTCATCTTGAAGGTCCAGATGCACTGCGACGCTTGTGCGCAGATTCTGCAAAAGCGTATAAGCAGGACAGAAGGTGTAGAATCGGTCGAGACTGATCTCCTCAACGGCCTAGTGGTCGTCAAAGGGGTGATGGATCCGGCTGTGCTCATCGAAAGCATCCAGCGGAAGACGCGGAGGCCGGCAGTCATCGTCGAAGAGGTGAAGCCGCGGGAGGAGGAGAAGAAGGCAGAGGAGGAAGAGAAGAAGCCAGATGAGGATAAGGCCGACGGCATCGAAGAGATCAAGAAGTATGACTTCTGG CCGCCCGT CCAGTACTATGTCGAGTACGTCTACCCATA CCCGCTACCGCCGCCACCGACGGCACTGGTGTCCGAGGAGTTCAGTGACGAGAACCCGAACGCTTGCACCGTCGCGTGATA CCATCTGAAGCTGTTCTTTTGCTTAGACGGTGGTTTCTATGCTAGAAATGCATGCTGATATGGTAATAAAATGAGTGGTTTTGAGAACTTGTACAAGATTGTGTTATTAAGTATCGTG AAAAGTGAGCTCGCATTGCTCAATTGACTCTTAAAAGG ]
[+] EMBL AU175013 [ AAAGGGGTGATGGATCCGGCTGTGCTCATCGAAAGCATCCAGCGGAAGACGCGGAGGCCGGCAGTCATCGTCGAAGAGGTGAANCCGCGGGAGGAGGAGAAGAAGGCAGAGGAGGAAGAGAAGAAGCCAGATGAGGATAAGGCCGACGGCATCGAAGAGATCAAGAAGTATGACTTCTGGCCCGCCCGTCCCAGTACTATGTCGAGTACGTCTACCCATACCCCGCTACCGCCGCCACCGACGGCACTGGTGTCCGAGGAGTTCAGTGACGAGAACCCGAACGCTTGCACCGTCGCGTGATACCCATCTGAAGCTGTTCTTTTGCTTAGACGGTGGTTTCTATGCTAGAAATGCATGCTGATATGGTAATAAAATGAGTGGTTTTGAGAACTTGTACAAGATTGTGTTATTAAGTATCATGAAAAAGTGAGCTCGCATTGCTCAATTGACTAAAAAAAaaa ]
consensusID : consensus_10571#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 297 fasta sequence
[GTCCAGTACTATGTCGAGTACGTCTACCCATACCCGTNCCGCCGCCACCGACGGCACTGGTGTCCGAGGAGTTCAGTGACGAGANCCCGAACGNTTGCNCCGTCGCGTGATNCCATCTGANGCTGTTCTTTTGCTTAGNCGGTGGTTTCTATGCTAGAAATGCATGCTGATATGGTAATAAAATGAGTGGTTTTGAGAACTTGTACAAGATTGTGTTATTAAGTATCATGAAAAGTGNGCTCGCATTGCTCAATTGACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU089761 [GTCCAGTACTATGTCGAGTACGTCTACCCATACCCGTNCCGCCGCCACCGACGGCACTGGTGTCCGAGGAGTTCAGTGACGAGANCCCGAACGNTTGCNCCGTCGCGTGATNCCATCTGANGCTGTTCTTTTGCTTAGNCGGTGGTTTCTATGCTAGAAATGCATGCTGATATGGTAATAAAATGAGTGGTTTTGAGAACTTGTACAAGATTGTGTTATTAAGTATCATGAAAAGTGNGCTCGCATTGCTCAATTGACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10571#0 CCGAAAGAAGCAACAACTGCAGAAGTAGAGGGTGTTCTAACACAAAGCGGAACTTCTCCC 60
consensus_10571#1 ------------------------------------------------------------
consensus_10571#0 GATTACAAGGTTGGCAACAGAATAACAGACATCAGCCAAAAAATGGTTGAAGAACTAAAG 120
consensus_10571#1 ------------------------------------------------------------
consensus_10571#0 GAGTCTGTGAAAGAAGAGCAGGCTGAGAAAAAGGAGGAGGCAGCCAAGGAGAAGCCAGAT 180
consensus_10571#1 ------------------------------------------------------------
consensus_10571#0 GAACCACAAGAGATCGTACTGAAAGTCGACATGCACTGCGAAGGATGTGCAAAGAAGGTC 240
consensus_10571#1 ------------------------------------------------------------
consensus_10571#0 GAGAAATCCCTCTTGAGATTTGAAGGAGTCGAAAACGTCAAGGCTGACAGTCGATCGAAG 300
consensus_10571#1 ------------------------------------------------------------
consensus_10571#0 ACGGTTGTGGTGAAAAGCAGGGCCGCAGATCCCTCAAAGGTCTGCGAGAGGGTTCAGAGG 360
consensus_10571#1 ------------------------------------------------------------
consensus_10571#0 AAGACAAAGAGAAGAGTTGAGCTGATTTTCCCTCTTCCTCCACCTCCAGAAGAGGAGAAG 420
consensus_10571#1 ------------------------------------------------------------
consensus_10571#0 AAAGAGGAGGCTCCAGCACCACCTCCAGAAGAAAAGAAAGAGGAGCCACCGAAGACAATA 480
consensus_10571#1 ------------------------------------------------------------
consensus_10571#0 ACTGTCATCTTGAAGGTCCAGATGCACTGCGACGCTTGTGCGCAGATTCTGCAAAAGCGT 540
consensus_10571#1 ------------------------------------------------------------
consensus_10571#0 ATAAGCAGGACAGAAGGTGTAGAATCGGTCGAGACTGATCTCCTCAACGGCCTAGTGGTC 600
consensus_10571#1 ------------------------------------------------------------
consensus_10571#0 GTCAAAGGGGTGATGGATCCGGCTGTGCTCATCGAAAGCATCCAGCGGAAGACGCGGAGG 660
consensus_10571#1 ------------------------------------------------------------
consensus_10571#0 CCGGCAGTCATCGTCGAAGAGGTGAAGCCGCGGGAGGAGGAGAAGAAGGCAGAGGAGGAA 720
consensus_10571#1 ------------------------------------------------------------
consensus_10571#0 GAGAAGAAGCCAGATGAGGATAAGGCCGACGGCATCGAAGAGATCAAGAAGTATGACTTC 780
consensus_10571#1 ------------------------------------------------------------
consensus_10571#0 TGGCCGCCCGTCCAGTACTATGTCGAGTACGTCTACCCATACCCGCTACCGCCGCCACCG 840
consensus_10571#1 ---------GTCCAGTACTATGTCGAGTACGTCTACCCATACCCG-TNCCGCCGCCACCG 50
************************************ * ************
consensus_10571#0 ACGGCACTGGTGTCCGAGGAGTTCAGTGACGAGAACCCGAACGCTTGCACCGTCGCGTGA 900
consensus_10571#1 ACGGCACTGGTGTCCGAGGAGTTCAGTGACGAGANCCCGAACGNTTGCNCCGTCGCGTGA 110
********************************** ******** **** ***********
consensus_10571#0 TACCATCTGAAGCTGTTCTTTTGCTTAGACGGTGGTTTCTATGCTAGAAATGCATGCTGA 960
consensus_10571#1 TNCCATCTGANGCTGTTCTTTTGCTTAGNCGGTGGTTTCTATGCTAGAAATGCATGCTGA 170
* ******** ***************** *******************************
consensus_10571#0 TATGGTAATAAAATGAGTGGTTTTGAGAACTTGTACAAGATTGTGTTATTAAGTATCATG 1020
consensus_10571#1 TATGGTAATAAAATGAGTGGTTTTGAGAACTTGTACAAGATTGTGTTATTAAGTATCATG 230
************************************************************
consensus_10571#0 AAAAGTGAGCTCGCATTGCTCAATTGACTAGCAAAAGGATGGTACAACCTATTTACCCGG 1080
consensus_10571#1 AAAAGTGNGCTCGCATTGCTCAATTGACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 290
******* ********************** **** * * ** * *
consensus_10571#0 GTTTAGATTTGACACTTGTGCTCGTATTTCTCATTAGAAATATGGTCATAATTTGGTATA 1140
consensus_10571#1 AAAAAAA----------------------------------------------------- 297
* *
consensus_10571#0 TTTTAATATAGAAAAAAAAGAT 1162
consensus_10571#1 ----------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||