cluster # 10572

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Oryza sativa
cluster # 10572 cluster # 10572 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10572#0 length = 552 sequences # 5

consensus_10572#1 length = 305 sequences # 2

consensusID : consensus_10572#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 552
fasta sequence

                              [TCACACACAGTTAGCATATCAGTAGTCGTTCACAGTTAGCATATCAGTGCATCATAAACTTGA-CCTTGGCTC-GATCGTACAATCCATCACAAC-TAAAGA-TAGTGGAAATGGGGCACCACCACAAGAACGACGACAAGGCCGCGGCGGCGGCCGGCGGCGACCACCGCAAGGAGGAGAAGCACCACAAGCACATGGAGCAGCTTGCCAAGCTCGGCGCCGTCGCCGCCGGAGCATACGCCATGCACGAGAAGCACAAGGCGAAGAAGGAACCGGAGAATGCGCGGTCGCACAGGGTGAAGGAGGAGATCGCCGCCACCATCGCCGCCGGCAGCGTCGGCCTCGCCATCCACGAGCATCACAAGAAGAAGGAAGCTAAGAAGCATGGCCATCACCATTAGCTACCTACCCTATCACTACTTACTGGACTAGTGTGTCTATTTATTTGATTATTACCATGCATGTACTCTTAGCTAGCATATCGGCTGTATTTTTGTCGACGGATACATGTACATCATCTATCTATTTTTCTTA-ATAATAATGTGAT-TGATTGTG]

[+] EMBL AK063053             [TCACACACAGTTAGCATATCAGTAGTCGTTCACAGTTAGCATATCAGTGCATCATAAACTTGA CCTTGGCTC GATCGTACAATCCATCACAAC TAAAGA TAGTGGAAATGGGGCACCACCACAAGAACGACGACAAGGCCGCGGCGGCGGCCGGCGGCGACCACCGCAAGGAGGAGAAGCACCACAAGCACATGGAGCAGCTTGCCAAGCTCGGCGCCGTCGCCGCCGGAGCATACGCCATGCACGAGAAGCACAAGGCGAAGAAGGAACCGGAGAATGCGCGGTCGCACAGGGTGAAGGAGGAGATCGCCGCCACCATCGCCGCCGGCAGCGTCGGCCTCGCCATCCACGAGCATCACAAGAAGAAGGAAGCTAAGAAGCATGGCCATCACCATTAGCTACCTACCCTATCACTACTTACTGGACTAGTGTGTCTATTTATTTGATTATTACCATGCATGTACTCTTAGCTAGCATATCGGCTGTATTTTTGTCGACGGATACATGTACATCATCTATCTATTTTTCTTA ATAATAATGTGAT TGATTG  ]
[-] EMBL CB964563             [             GCATATCAGTAGTCGTTCACAGTTAGCATATCAGTGCATCATAAACTTGA CCTTGGCTC GATCGTACAATCCATCACAAC TAAAGA TAGTGGAAATGGGGCACCACCACAAGAACGACGACAAGGCCGCGGCGGCGGCCGGCGGCGACCACCGCAAGGAGGAGAAGCACCACAAGCACATGGAGCAGCTTGCCAAGCTCGGCGCCGTCGCCGCCGGAGCATACGCCATGCACGAGAAGCACAAGGCGAAGAAGGAACCGGAGAATGCGCGGTCGCACAGGGTGAAGGAGGAGATCGCCGCCACCATCGCCGCCGGCAGCGTCGGCCTCGCCATCCACGAGCATCACAAGAAGAAGGAAGCTAAGAAGCATGGCCATCACCATTAGCTACCTACCCTATCACTACTTACTGGACTAGTGTGTCTATTTATTTGATTATTACCATGCATGTACTCTTAGCTAGCATATCGGCTGTATTTTTGTCGACGGATACATGTACATCATCTATCTA TTTTCTTA ATA                   ]
[-] EMBL CB964435             [              gcaattccTATTTGGTCACCGGTAGCCTTTCCGGGCATCCTTAACTTGACCCTTGG TCGGTTCGTCCAATCCTTCCCAACTTAAGGATTATTGGAATTGGGCCACCACCCCAAGTTCGCCGCCAAGCCCCCGCCGCCGCCCGCCGGCGACCACCGCAAGGAGGAGAAGCACCACAAGCACATGGAGCAGCTTGCCAAGCTCGGCGCCGTCGCCGCCGGAGCATACGCCATGCACGAGAAGCACAAGGCGAAGAAGGAACCGGAGAATGCGCGGTCGCACAGGGTGAAGGAGGAGATCGCCGCCACCATCGCCGCCGGCAGCGTCGGCCTCGCCATCCACGAGCATCACAAGAAGAAGGAAGCTAAGAAGCATGGCCATCACCATTAGCTACCTACCCTATCACTACTTACTGGACTAGTGTGTCTATTTATTTGATTATTACCATGCATGTACTCTTAGCTAGCATATCGGCTGTATTTTTGTCGACGGATACATGTACATCATCTATCTATTTTTCTTA ATA                   ]
[-] EMBL CB966654             [                                                                                                                                                                      ACCGCAAGGAGGAGAAGCACCACAAGCACATGGAGCAGCTTGCCAAGCTCGGCGCCGTCGCCGCCGGAGCATACGCCATGCACGAGAAGCACAAGGCGAAGAAGGAACCGGAGAATGCGCGGTCGCACAGGGTGAAGGAGGAGATCGCCGCCACCATCGCCGCCGGCAGCGTCGGCCTCGCCATCCACGAGCATCACAAGAAGAAGGAAGCTAAGAAGCATGGCCATCACCATTAGCTACCTACCCTATCACTACTTACTGGACTAGTGTGTCTATTTATTTGATTATTACCATGCATGTACTCTTAGCTAGCATATCGGCTGTATTTTTGTCGACGGATACATGTACATCATCTATCTATTTTTCTTA ATAATAATGTGATCTGATgttg]
[-] EMBL CB966030             [                                                                                                                                                                                                                                                                                                                                                                   AGCATCACAAGAAGAAGGAAGCTAAGAAGCATGGCCATCACCATTAGCTACCTACCCTATCACTACTTACTGGACTAGTGTGTCTATTTATTTGATTATTACCATGCATGTACTCTTAGCTAGCATATC GCTGTATTTTTGTCGACGGATACATGTACATCATCTATCTATTTTTCTTATATAATAATGT ATCTGAT    ]




>consensus_10572#0
TCACACACAGTTAGCATATCAGTAGTCGTTCACAGTTAGCATATCAGTGCATCATAAACT
TGACCTTGGCTCGATCGTACAATCCATCACAACTAAAGATAGTGGAAATGGGGCACCACC
ACAAGAACGACGACAAGGCCGCGGCGGCGGCCGGCGGCGACCACCGCAAGGAGGAGAAGC
ACCACAAGCACATGGAGCAGCTTGCCAAGCTCGGCGCCGTCGCCGCCGGAGCATACGCCA
TGCACGAGAAGCACAAGGCGAAGAAGGAACCGGAGAATGCGCGGTCGCACAGGGTGAAGG
AGGAGATCGCCGCCACCATCGCCGCCGGCAGCGTCGGCCTCGCCATCCACGAGCATCACA
AGAAGAAGGAAGCTAAGAAGCATGGCCATCACCATTAGCTACCTACCCTATCACTACTTA
CTGGACTAGTGTGTCTATTTATTTGATTATTACCATGCATGTACTCTTAGCTAGCATATC
GGCTGTATTTTTGTCGACGGATACATGTACATCATCTATCTATTTTTCTTAATAATAATG
TGATTGATTGTG

consensusID : consensus_10572#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 305
fasta sequence

                              [TCATCGACCACACCTGCATCATCAATCTGCCTACATATCGATCGATTGATCTCCTGGTTAATTAGCTAACTAAATTTCCCCGTACGTACGTACACAAGATGTTCGGCCACCACAAGAACGAGGAGAAGATGGCAGCAGCCGGGGCGGCGCCCAAGGACGCCGGCGACTATCGCAAGGAGGAGAAGCACCACAAGCACATGGAGCAGATCGCCAAGCTCGGCGCCGC-CGCCGCCGGAGCATACGCCATGCATGAGAAGAAGCAGGCGAAGAAGGACCCGGAGCACGCGCGGTCGCACAAGATGAAG]

[+] EMBL CF313839             [TCATCGACCACACCTGCATCATCAATCTGCCTACATATCGATCGATTGATCTCCTGGTTAATTAGCTAACTAAATTTCCCCGTACGTACGTACACAAGATGTTCGGCCACCACAAGAACGAGGAGAAGATGGCAGCAGCCGGGGCGGCGCCCAAGGACGCCGGCGACTATCGCAAGGAGGAGAAGCACCACAAGCACATGGAGCAGATCGCCAAGCTCGGCGCCGC CGCCGCCGGAGCATACGCCATGCATGAGAAGAAGCAGGCGAAGAAGGACCCGGAGCACGCGCGGTCGCACAAGATGAAG]
[+] EMBL C27651               [              TGCATCATCAATCTGCCTACATATCGATCGATTGATCTCCTGGTTAATTAGCTAACTAAATTTCCCCGTACGTACGTACACAAGATGTTCGGCCACCACAAGANCGAGGAGAAGATNGCAGCA NCGGGG NGCGCCAAAGGACGCCGGCGACTATCGNAAGGAGGAGAAGCACCACAAGCACATNGAGCAGATCGCCAAGCTCGGCGNCGCNCGC  CCGGANCATACGCCATGCATGAGAAGAAGCAGGCGAAGAAGGACCCNGAGCACGCGCNGTCGCACA        ]




>consensus_10572#1
TCATCGACCACACCTGCATCATCAATCTGCCTACATATCGATCGATTGATCTCCTGGTTA
ATTAGCTAACTAAATTTCCCCGTACGTACGTACACAAGATGTTCGGCCACCACAAGAACG
AGGAGAAGATGGCAGCAGCCGGGGCGGCGCCCAAGGACGCCGGCGACTATCGCAAGGAGG
AGAAGCACCACAAGCACATGGAGCAGATCGCCAAGCTCGGCGCCGCCGCCGCCGGAGCAT
ACGCCATGCATGAGAAGAAGCAGGCGAAGAAGGACCCGGAGCACGCGCGGTCGCACAAGA
TGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10572#0      TCACACACAGTTAGCATATCAGTAGTCGTTCA-CAGTTAGCATATCAGTGCATCATAAAC 59
consensus_10572#1      ------TCATCGACCACACCTGCA-TCATCAATCTGCCTACATATCGATCGAT--TGATC 51
                              **   * ** * * * * ** *  * * *    ******  *  **  * * *

consensus_10572#0      TTGACCTTGGCTCGATCG-TACAATCCATCACAACTAAAGATAGTGGAAATGGGGCACCA 118
consensus_10572#1      TCCTGGTTAATTAGCTAACTAAATTTCCCCGTACGTACGTACACAAGATGTTCGG--CCA 109
                       *     **   * * *   ** * * *  *  *  **   * *   **  *  **  ***

consensus_10572#0      CCACAAGAACGACGACAAG---------GCCGCGGCGGCGGCCGG------CGGCGACCA 163
consensus_10572#1      CCACAAGAACGAGGAGAAGATGGCAGCAGCCGGGGCGGCGCCCAAGGACGCCGGCGACTA 169
                       ************ ** ***         **** ******* **        ******* *

consensus_10572#0      CCGCAAGGAGGAGAAGCACCACAAGCACATGGAGCAGCTTGCCAAGCTCGGCGCCGTCGC 223
consensus_10572#1      TCGCAAGGAGGAGAAGCACCACAAGCACATGGAGCAGATCGCCAAGCTCGGCGCCGCCGC 229
                        ************************************ * **************** ***

consensus_10572#0      CGCCGGAGCATACGCCATGCACGAGAAGCACAAGGCGAAGAAGGAACCGGAGAATGCGCG 283
consensus_10572#1      CGCCGGAGCATACGCCATGCATGAGAAGAAGCAGGCGAAGAAGGACCCGGAGCACGCGCG 289
                       ********************* ****** *  ************* ****** * *****

consensus_10572#0      GTCGCACAGGGTGAAGGAGGAGATCGCCGCCACCATCGCCGCCGGCAGCGTCGGCCTCGC 343
consensus_10572#1      GTCGCACAAGATGAAG-------------------------------------------- 305
                       ******** * *****                                            

consensus_10572#0      CATCCACGAGCATCACAAGAAGAAGGAAGCTAAGAAGCATGGCCATCACCATTAGCTACC 403
consensus_10572#1      ------------------------------------------------------------
                                                                                   

consensus_10572#0      TACCCTATCACTACTTACTGGACTAGTGTGTCTATTTATTTGATTATTACCATGCATGTA 463
consensus_10572#1      ------------------------------------------------------------
                                                                                   

consensus_10572#0      CTCTTAGCTAGCATATCGGCTGTATTTTTGTCGACGGATACATGTACATCATCTATCTAT 523
consensus_10572#1      ------------------------------------------------------------
                                                                                   

consensus_10572#0      TTTTCTTAATAATAATGTGATTGATTGTG 552
consensus_10572#1      -----------------------------