These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1058#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence [ATTTCAGCTTAGCAACTAACATGGGTCAACAACAAAGTACCGAATCAGCATTCAGCCTTCCTTATGAAACAGCAATCACACCAGCTATTGGCTATGGTACTCAAGTTCATGTCTATGGTACAGCCACTGGCGATCGATTCGAAATCAATTTGGCCAACAACCGTGGTGATATCTTTTTACACGTTAATCCACGTGTCCGTGACCGTCAATTGGTCTTGAACTCTGCACCTGCTGGTAACTGGGGTGGTGAAGAACGTAAACCATTAAACTTACAACTGGTGGATCCNATTCAAGCTCCTCATCATGGTCACTGAACAAGCCTTCAAAATTGCCATTAACAACGAACATGTTGCTGATTACAACCATCGATTACCACTCAATCTTGCTGAATTAGTTACAGTTAAAGGTGAGTGGTAATCGATGGGTGTAATCAGCATCATGGGCACTGCACNNNCNGCCTGGGCGCCATCTGCNNCGCGGAGGGTCGCAAGCGGGTCCAGAGCTCGTAAGAGCGGCGGTACGGGGGGGGAACCCAACGGCTGCACGGACAGCTAATCCCAGGGCACCGGCCTCGGGCGTGTAGAACATCCGGCCCTTCGTGCTCGNCATAAACCG] [+] EMBL CA754718 [ATTTCAGCTTAGCAACTAACATGGGTCAACAACAAAGTACCGAATCAGCATTCAGCCTTCCTTATGAAACAGCAATCACACCAGCTATTGGCTATGGTACTCAAGTTCATGTCTATGGTACAGCCACTGGCGATCGATTCGAAATCAATTTGGCCAACAACCGTGGTGATATCTTTTTACACGTTAATCCACGTGTCCGTGACCGTCAATTGGTCTTGAACTCTGCACCTGCTGGTAACTGGGGTGGTGAAGAACGTAAACCATTAAACTTACAACTGGTGGATCCNATTCAAGCTCCTCATCATGGTCACTGAACAAGCCTTCAAAATTGCCATTAACAACGAACATGTTGCTGATTACAACCATCGATTACCACTCAATCTTGCTGAATTAGTTACAGTTAAAGGTGAGTGGTAATCGATGGGTGTAATCAGCATCATGGGCACTGCACNNNCNGCCTGGGCGCCATCTGCNNCGCGGAGGGTCGCAAGCGGGTCCAGAGCTCGTAAGAGCGGCGGTACGGGGGGGGAACCCAACGGCTGCACGGACAGCTAATCCCAGGGCACCGGCCTCGGGCGTGTAGAACATCCGGCCCTTCGTGCTCGNCATAAACCG] consensusID : consensus_1058#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence [TTCAGCTTAGCAACTAACATGGGTCAACAACAAAGTACCGAATCAGCATTCAGCCTTCCTTATGAAACAGCAATCACACCAGCTATTGGCTATGGTACTCAAGTTCATGTCTATGGTACAGCCACTGGCGATCGATTCGAAATCAATTTGGCCAACAACCGTGGTGATATCGTTTTACACGTTAATCCACGTGTCCGTGACCGTCAATTGGTCTTGAACTCTGCACCTGCTGGTAACTGGGGTGGTGAAGAACGTAAACCATTAAACTTTACAACTGGTGATCAATTCAAACTCCTCATCATGGTCACTGAACAAGCCTTCAAAATTGCCATTAACAACGAACATGTTGCTGATTACAACCATCGATTACCACTCAATCTTGCTGAATTAGTTACAGTTAAAGGTGACTTTGAATTAACCAACCTCGTCGTCTATCCAGGTTTCGTTCCATACGGTCAACCATGGACTTTCGAAAAAGAAACACCACTACCAATCAACGTCTTTCCTGGTCGTGTCATTTACATTGATGGTCGTGCTGATGACAATGCATCACGATTTGAATTCAATTTATTAACTGATACATACNATGGAGCTGAT] [+] EMBL CA758861 [TTCAGCTTAGCAACTAACATGGGTCAACAACAAAGTACCGAATCAGCATTCAGCCTTCCTTATGAAACAGCAATCACACCAGCTATTGGCTATGGTACTCAAGTTCATGTCTATGGTACAGCCACTGGCGATCGATTCGAAATCAATTTGGCCAACAACCGTGGTGATATCGTTTTACACGTTAATCCACGTGTCCGTGACCGTCAATTGGTCTTGAACTCTGCACCTGCTGGTAACTGGGGTGGTGAAGAACGTAAACCATTAAACTTTACAACTGGTGATCAATTCAAACTCCTCATCATGGTCACTGAACAAGCCTTCAAAATTGCCATTAACAACGAACATGTTGCTGATTACAACCATCGATTACCACTCAATCTTGCTGAATTAGTTACAGTTAAAGGTGACTTTGAATTAACCAACCTCGTCGTCTATCCAGGTTTCGTTCCATACGGTCAACCATGGACTTTCGAAAAAGAAACACCACTACCAATCAACGTCTTTCCTGGTCGTGTCATTTACATTGATGGTCGTGCTGATGACAATGCATCACGATTTGAATTCAATTTATTAACTGATACATACNATGGAGCTGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1058#0 ATTTCAGCTTAGCAACTAACATGGGTCAACAACAAAGTACCGAATCAGCATTCAGCCTTC 60 consensus_1058#1 --TTCAGCTTAGCAACTAACATGGGTCAACAACAAAGTACCGAATCAGCATTCAGCCTTC 58 ********************************************************** consensus_1058#0 CTTATGAAACAGCAATCACACCAGCTATTGGCTATGGTACTCAAGTTCATGTCTATGGTA 120 consensus_1058#1 CTTATGAAACAGCAATCACACCAGCTATTGGCTATGGTACTCAAGTTCATGTCTATGGTA 118 ************************************************************ consensus_1058#0 CAGCCACTGGCGATCGATTCGAAATCAATTTGGCCAACAACCGTGGTGATATCTTTTTAC 180 consensus_1058#1 CAGCCACTGGCGATCGATTCGAAATCAATTTGGCCAACAACCGTGGTGATATCGTTTTAC 178 ***************************************************** ****** consensus_1058#0 ACGTTAATCCACGTGTCCGTGACCGTCAATTGGTCTTGAACTCTGCACCTGCTGGTAACT 240 consensus_1058#1 ACGTTAATCCACGTGTCCGTGACCGTCAATTGGTCTTGAACTCTGCACCTGCTGGTAACT 238 ************************************************************ consensus_1058#0 GGGGTGGTGAAGAACGTAAACCATTAAACTT-ACAACTGGTGGATCCNATTCAAGCTCCT 299 consensus_1058#1 GGGGTGGTGAAGAACGTAAACCATTAAACTTTACAACTGGTGA--TCAATTCAAACTCCT 296 ******************************* ********** * ****** ***** consensus_1058#0 CATCATGGTCACTGAACAAGCCTTCAAAATTGCCATTAACAACGAACATGTTGCTGATTA 359 consensus_1058#1 CATCATGGTCACTGAACAAGCCTTCAAAATTGCCATTAACAACGAACATGTTGCTGATTA 356 ************************************************************ consensus_1058#0 CAACCATCGATTACCACTCAATCTTGCTGAATTAGTTACAGTTAAAGGTGAGTGGTAATC 419 consensus_1058#1 CAACCATCGATTACCACTCAATCTTGCTGAATTAGTTACAGTTAAAGGTGACTTTGAAT- 415 *************************************************** * *** consensus_1058#0 GATGGGTGTAATCAGCATCATGGGCACTGCACNNNCNGCCTGGGCGCCATCTGCNNCGCG 479 consensus_1058#1 --------TAACCAACCTCGTCGTCTATCCAGGTTTCGTTCCA-TACGGTCAACCATG-- 464 *** ** * ** * * * * ** * * ** * * consensus_1058#0 GAGGGTCGCAAGCGGGTCCAGAGCTCGTAAGAGCGGCGGTACGGGGGGGGAACCCAACGG 539 consensus_1058#1 GACTTTCGAAAAAGAAACACCACTACCAATCAACGTCTTTCCTGGTCGTGT------CAT 518 ** *** ** * * * * * * ** * * * ** * * * consensus_1058#0 CTGCACGGACAGCTAATCCCAGGGCACCGGCCTCGGGCGTGTAGAACATCCGGCCCTTCG 599 consensus_1058#1 TTACATTGATGGTCGTGCTGATGACAATGCATCACGATTTGAATTCAATTTATTAACTGA 578 * ** ** * * * * ** * * ** * ** * consensus_1058#0 TGCTCGNCATAAACCG--- 615 consensus_1058#1 TACATACNATGGAGCTGAT 597 * * ** * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||