These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10583#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 614 fasta sequence [GAGTAAAAACTCGTTGGCGACACTGACAGTCTCCTCTTCC-CCACTGGCCTAGGGCAAGAGATCGACGAGAGGAGCGGAGGGAGGAGGAGGAGATGGGCGGAGTGGAGCAGGAGCAGCTGCTCAGCCTGGGCGTCCTCATCGACATCGTCGACGAGCAGTGGATGCGCGACACCCTCCCAGCCGACGATGTCCCCGTGCCGCCCGCCATGGCCGTGAAGACGGAGGAGGCGGAGGATCCAGCACCCGCCA---ATCAGG--AAAGCCAA--CCA-GC-ACAA--GGGG-AT-G-TGTGGC-GTGA-TTTCA-CATTGGAGAATCTCTGATCACTTGTGACCTACAAGTGCTTCCAGAGATGAATATACCATGCTGGGAATCTAGGAGCTACGTGGTCATTGCAATTTCTGAGC-TTCATATAACTAT-AAGGTCATCTGAACTTAGCGTACTATCTGGTTTTGTTTCAGCTGTAGTTCGTCGAACCCATGCTTTAAACCGATGTAAATGCTCCAGATATTGGTAGCACATTGCTGCATGATGACACCGAA-CCTTGTGATGAGAAATTATATGTTGTGAACTATGATGGTGATGAGAACAGTCATTCAGATCTGGAACATATCAAATCACTGGTA] [+] EMBL CF302270 [GAGTAAAAACTCGTTGGCGACACTGACAGTCTCCTCTTCC CCACTGGCCTAGGGCAAGAGATCGACGAGAGGAGCGGAGGGAGGAGGAGGAGATGGGCGGAGTGGAGCAGGAGCAGCTGCTCAGCCTGGGCGTCCTCATCGACATCGTCGACGAGCAGTGGATGCGCTACACCCTCCCAGCCGACGATGTCCCCGTGCCGCCCGCCATGGCCGTGAATACGGAGGAGGCGGAGGATCCAGCACCCGCCA ATCAGG AAAGCCAA CCA GC ACAA GGGG AT G TGTGGC GTGA TTTCA CATTGGAGAATCTCTGATCACTTGTGACCTACAAGTGCTTCCAGAGATGAATATACCATGCTGGGAATCTAGGAGCTACGTGGTCATTGCAATTTCTGAGC TTCATATAACTAT AAGGTCATCTGAACTTAGCG ] [+] EMBL AK103878 [ ACTGACAGTCTCCTCTTCCACCACTGGCCTAGGGCAAGAGATCGACGAGAGGAGCGGAGGGAGGAGGAGGAGATGGGCGGAGTGGAGCAGGAGCAGCTGCTCAGCCTGGGCGTCCTCATCGACATCGTCGACGAGCAGTGGATGCGCGACACCCTCCCAGCCGACGATGTCCCCGTGCCGCCCGCCATGGCCGTGAAGACGGAGGAGGCGGAGGATCCAGCACCCGCCA ATCAGG AAAGCCAA CCA GC ACAA GGGG AT G TGTGGC GTGA TTTCA CATTGGAGAATCTCTGATCACTTGTGACCTACAAGTGCTTCCAGAGATGAATATACCATGCTGGGAATCTAGGAGCTACGTGGTCATTGCAATTTCTGAGC TTCATATAACTAT AAGGTCATCTGAACTTAGCGTACTATCTGGTTTTGTTTCAGCTGTAGTTCGTCGAACCCATGCTTTAAACCGATGTAAATGCTCCAGATATTGGTAGCACATTGCTGCATGATGACACCGAA CCTTGTGATGAGAAATTATATGTTGTGAACTATGATGGTGATGAGAACAGTCATTCAGATCTGGAACATATCAAATCACTGGTA] [+] EMBL CB685954 [ CCTCTTCC CCACTGGCCTAGGGCAAGAGATCGACGAGAGGAGCGGAGGGAGGAGGAGGAGATGGGCGGAGTGGAGCAGGAGCAGCTGCTCAGCCTGGGCGTCCTCATCGACATCGTCGACGAGCAGTGGATGCGCGACACCCTCCCAGCCGACGATGTCCCCGTGCCGCCCGCCATGGCCGTGAAGACGGAGGAGGCGGAGGATCCAGCACCCGCCA ATCAGG AAAGCCAA CCA GC ACAA GGGG AT G TGTGGC GTGA TTTCA CATTGGAGAATCTCTGATCACTTGTGACCTACAAGTGCTTCCAGAGATGAATATACCATGCTGGGAATCTAGGAGCTACGTGGTCATTGCAATTTCTGAGC TTCATATAACTAT AAGGTCATCTGAACTTAGCGTACTATCTGGTTTTGTTTCAGCTGTAGTTCGTCGAACCCATGCTTTAAACCGATGTAAATGCTCCAGATATTGGTAGCACATTGCTGCATGATGACACCGAA CCTTGTGATGAGAAATTATATGTTGTGAACTATGATGGTGATGAGAACAGTCATTC ] [+] EMBL OS1321604 [ TCTTCCACCACTGGCCTAGGGCAAGAGATCGACGAGAGGAGCGGAGGGAGGAGGAGGAGATGGGCGGAGTGGAGCAGGAGCAGCTGCTCAGCCTGGGCGTCCTCATCGACATCGTCGACGAGCAGTGGATGCGCGACACCCTCCCAGCCGACGATGTCCCCGTGCCGCCCGCCATGGCCGTNAAGACGGAGGAGGCGGAGGATCCAGCACCCGCCATAGATCAGG AAAGCCAA CCA GC ACAA GGGG AT G TGTGGC GTGA TTTCA CATTGGAGAATCTCTGATCACTTGTGACCTACAAGTGCTTCCAGAGATGAATATACCATGCTGGGAATCTAGGAGCTACGTGGTCATTTCAATTTCTGAGCTTTNATATAACTATAAAGGTCATCTGAACTTAGNGTACTATCT ] [+] EMBL AU088739 [ attcCAGGGAAAAGCCAAACCCANGCAACAAAGGGGGAATCGTTNTGGCGGTGATTTTCANCATTGGAGAATCTCTGATCACTTGTGACCTACAAGTGCTTCCAGAGATGAATATACCATGCTGGGAATCTAGGAGCTACGTGGTCATTGCAATTTCTGAGC TTCATATAACTAT AAGGTCATCTGAACTTAGCGTACTATCTGGTTTTGTTTCAGCTGTAGTTCGTCGAACCCATGCTTTAAACCGATGTAAATGCTCCAGATATTGGTAGCACATTGCTGCATGATGACACCGAA CCTTGTGATGAGAAATTATATGTTGTGAACTATGATGGTGATGAGAACAGTCATTCAGATCTGGAACATATCAAAaaaaa ] [-] EMBL CF302269 [ CAGCTGTAGTTCGTCGAACCCATGCTTTAAACCGATGTAAATGCTCCAGATATTGGTAGCACATTGCTGCATGATGACACCGAACCCTTGTGATGAGAAATTATATGTTGTGAACTATGATGGTGATGAGAACAGTCATTCAaaaaa ] consensusID : consensus_10583#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence [AGAGGACGAGACAAGGGGGGTCATTGCAATTTTTGAGCTTCATATAACTATAAGGTCATCTGAACTTAGCATACTATCTGGTTTTGTTTCAGCTGTAGTTCGTCGAACCCATGCTTTAAACCGATGTAAATGCTCCAGATATTGGTAGCACATTGCTGCATGATGACACCGAACCCTGTGATGAGAAATTATATGTTGTGAACTATGATGGTGATGAGAACAGTTATTCAGATCTGGAACATATCAAATCACTGGTAAAAAAAAAAAAAAAA] [-] EMBL CA761918 [AGAGGACGAGACAAGGGGGGTCATTGCAATTTTTGAGCTTCATATAACTATAAGGTCATCTGAACTTAGCATACTATCTGGTTTTGTTTCAGCTGTAGTTCGTCGAACCCATGCTTTAAACCGATGTAAATGCTCCAGATATTGGTAGCACATTGCTGCATGATGACACCGAACCCTGTGATGAGAAATTATATGTTGTGAACTATGATGGTGATGAGAACAGTTATTCAGATCTGGAACATATCAAATCACTGGTAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10583#0 GAGTAAAAACTCGTTGGCGACACTGACAGTCTCCTCTTCCCCACTGGCCTAGGGCAAGAG 60 consensus_10583#1 ------------------------------------------------------------ consensus_10583#0 ATCGACGAGAGGAGCGGAGGGAGGAGGAGGAGATGGGCGGAGTGGAGCAGGAGCAGCTGC 120 consensus_10583#1 ------------------------------------------------------------ consensus_10583#0 TCAGCCTGGGCGTCCTCATCGACATCGTCGACGAGCAGTGGATGCGCGACACCCTCCCAG 180 consensus_10583#1 ------------------------------------------------------------ consensus_10583#0 CCGACGATGTCCCCGTGCCGCCCGCCATGGCCGTGAAGACGGAGGAGGCGGAGGATCCAG 240 consensus_10583#1 ------------------------------------------------------------ consensus_10583#0 CACCCGCCAATCAGGAAAGCCAACCAGCACAAGGGGATGTGTGGCGTGATTTCACATTGG 300 consensus_10583#1 ------------------------------------------------------------ consensus_10583#0 AGAATCTCTGATCACTTGTGACCTACAAGTGCTTCCAGAGATGAATATACCATGCTGGGA 360 consensus_10583#1 ---------------------------------------------------------AGA 3 ** consensus_10583#0 ATCTAGGAGCTACGTGGTCATTGCAATTTCTGAGCTTCATATAACTATAAGGTCATCTGA 420 consensus_10583#1 GGACGAGACAAGGGGGGTCATTGCAATTTTTGAGCTTCATATAACTATAAGGTCATCTGA 63 ** * ************** ****************************** consensus_10583#0 ACTTAGCGTACTATCTGGTTTTGTTTCAGCTGTAGTTCGTCGAACCCATGCTTTAAACCG 480 consensus_10583#1 ACTTAGCATACTATCTGGTTTTGTTTCAGCTGTAGTTCGTCGAACCCATGCTTTAAACCG 123 ******* **************************************************** consensus_10583#0 ATGTAAATGCTCCAGATATTGGTAGCACATTGCTGCATGATGACACCGAACCTTGTGATG 540 consensus_10583#1 ATGTAAATGCTCCAGATATTGGTAGCACATTGCTGCATGATGACACCGAACCCTGTGATG 183 **************************************************** ******* consensus_10583#0 AGAAATTATATGTTGTGAACTATGATGGTGATGAGAACAGTCATTCAGATCTGGAACATA 600 consensus_10583#1 AGAAATTATATGTTGTGAACTATGATGGTGATGAGAACAGTTATTCAGATCTGGAACATA 243 ***************************************** ****************** consensus_10583#0 TCAAATCACTGGTA--------------- 614 consensus_10583#1 TCAAATCACTGGTAAAAAAAAAAAAAAAA 272 ************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||