Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 10585 cluster # 10585       Sequences # 7       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10585#0 length = 1181 sequences # 7  
consensusID : consensus_10585#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1181
fasta sequence 
                              [ATGGACTGAGGAGTAGAAACGGCTTTCCCTTTTCTGTTCTTCCTTCCACTCGCAAACTCTCCAAGAAGAAGAAGTTGCGAGCCAATCCCCGCTTGCGATCCCGACCTGGCCACGGATGGTGGGCGGCGGCGGCGGCGGGGAGGCGGCAATGTCGCCGCCTTCGGGCGGCGGGAAGCGCGGGAGGGATCCGGAGGAGGACGTGTACGTGGACAACCTCCACTCCCACAAGCGCTACCTCAGCGAGATAATGGCATCCAGTTTGAATGGATTGTCTGTCGGAGATTCACTGGTTGACAATATCATGGAGTCCCCTGCGAGGTCGGAGAATACCTCTTATTTCAGGGATGAAATAATATCCCAATACTCACCAATGTCTGAAGATTCAGATGACTACCGGTGCTACGACACTCAATTACCCAATGGAAGTCAAACCGATGCAATGGTTAGCCCTTCAACTAGTCCAATGTCATCCCCACACCGATTCCAGAAACCACAATCTGGTCTTTTATCCGCAAACCCGTACCCTCTGCCCAGCTGCTCACTCTCGTCGGTCGTCTGCTCTAATCCTCGTCGTGGCTCTGAAAATGAAGGCCGGTTCCCATCTTCTCCAAATGACATGTG-CCATGGAGGTGACCTGAGGAAAACAGCACTACTGAGGTCAGTGCAAATGAGGGTTCAGGGACCACATGCATATGAACTGTCGTTCTGTGGCAGACAAGAACAAGAACATGCACACGACCATGAGGATGAACATCAGCATGAACATCTAGAGGGTTTGGAAGGGGCAGAAAGATCGTCATCACATAGAGAAACAATCAGTGATGGAGTCAGTTACCAGATGCCGGAAAACAGCTATGGGCGACCAGAGCATGATATAGATTACATTGAGGATTGCACCCCGCATGGTTGTCTGAGTGACCTCAAGTTTAAGCAAGAGGACAAGGACTGTAGTAAACTAACCAGCATGGATAAGAATAGGTAGCAGAGAGATCACACCATATGCCATTTTCCTGGAAATTATTTTTGTGGGAGATTATGGCTCATATGCTTATGATAATTCTGATTGATGTTCAATCCACTGTAACCCCTAGTATGAACATGTGCTTTTCGAGATCCTGAAATTGTAACCTTTGAGTAAAATTAACCCCTGAAA-TGCGGTATTTTAGCGCCAAAAAAAAAAA]

[+] EMBL CF317939             [ATGGACTGAGGAGTAGAAACGGCTTTCCCTTTTCTGTTCTTCCTTCCACTCGCAAACTCTCCAAGAAGAAGAAGTTGCGAGCCAATCCCCGCTTGCGATCCCGACCTGGCCACGGATGGTGGGCGGCGGCGGCGGCGGGGAGGCGGCAATGTCGCCGCCTTCGGGCGGCGGGAAGCGCGGGAGGGATCCGGAGGAGGACGTGTACGTGGACAACCTCCACTCCCACAAGCGCTACCTCAGCGAGATAATGGCATCCAGTTTGAATGGATTGTCTGTCGGAGATTCACTGGTTGACAATATCATGGAGTCCCCTGCGAGGTCGGAGAATACCTCTTATTTCAGGGATGAAATAATATCCCAATACTCACTAATGTCTGAAGATTCAGATGACTACCGGTGCTACGACACTCAATTACCCAATGGAAGTCAAACCGATGCAATGGTTAGCCCTTCAACTAGTCCAATGTCATCCCCACACCGATTCCAGAAACCACAATCTGGTCTTTTATCCGCAAACCCGTACCCTCTGCCCAGCTGCTCACTCTCGTCGGTCGTCTGCTCTAATCCTCGTCGTGGCTCTG AAATGAAGGCCGGTTCCCATCTTCTCC AATGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AK071622             [                             TTTTCTGTTCTTCCTTCCACTCGCAAACTCTCCAAGAAGAAGAAGTTGCGAGCCAATCCCCGCTTGCGATCCCGACCTGGCCACGGATGGTGGGCGGCGGCGGCGGCGGGGAGGCGGCAATGTCGCCGCCTTCGGGCGGCGGGAAGCGCGGGAGGGATCCGGAGGAGGACGTGTACGTGGACAACCTCCACTCCCACAAGCGCTACCTCAGCGAGATAATGGCATCCAGTTTGAATGGATTGTCTGTCGGAGATTCACTGGTTGACAATATCATGGAGTCCCCTGCGAGGTCGGAGAATACCTCTTATTTCAGGGATGAAATAATATCCCAATACTCACCAATGTCTGAAGATTCAGATGACTACCGGTGCTACGACACTCAATTACCCAATGGAAGTCAAACCGATGCAATGGTTAGCCCTTCAACTAGTCCAATGTCATCCCCACACCGATTCCAGAAACCACAATCTGGTCTTTTATCCGCAAACCCGTACCCTCTGCCCAGCTGCTCACTCTCGTCGGTCGTCTGCTCTAATCCTCGTCGTGGCTCTGAAAATGAAGGCCGGTTCCCATCTTCTCCAAATGACATGTG CCATGGAGGTGACCTGAGGAAAACAGCACTACTGAGGTCAGTGCAAATGAGGGTTCAGGGACCACATGCATATGAACTGTCGTTCTGTGGCAGACAAGAACAAGAACATGCACACGACCATGAGGATGAACATCAGCATGAACATCTAGAGGGTTTGGAAGGGGCAGAAAGATCGTCATCACATAGAGAAACAATCAGTGATGGAGTCAGTTACCAGATGCCGGAAAACAGCTATGGGCGACCAGAGCATGATATAGATTACATTGAGGATTGCACCCCGCATGGTTGTCTGAGTGACCTCAAGTTTAAGCAAGAGGACAAGGATTGTAGTAAACTAACCAGCATGGATAAGAATAGGTAGCAGAGAGATCACACCATATGCCATTTTCCTGGAAATTATTTTTGTGGGAGATTATGGCTCATATGCTTATGATAATTCTGATTGATGTTCAATCCACTGTAACCCCTAGTATGAACATGTGCTTTTCGAGATCCTGAAATTGTAACCTTTGAGTAAAATTAACCCCTGAAA TGCGGTA                     ]
[+] EMBL BP184877             [                                               acgaggAAACTCTCCAAGAAGAAGAAGTTGCGAGCCAATCCCCGCTTGCGATCCCGACCTGGCCACGGATGGTGGGCGGCGGCGGCGGCGGGGAGGCGGCAATGTCGCCGCCTTCGGGCGGCGGGAAGCGCGGGAGGGATCCGGAGGAGGACGTGTACGTGGACAACCTCCACTCCCACAAGCGCTACCTCAGCGAGATAATGGCATCCAGTTTGAATGGATTGTCTGTCGGAGATTCACTGGTTGACAATATCATGGAGTCCCCTGCGAGGTCGGAGAATACCTCTTATTTCAGGGATGAAATAATATCCCAATACTCACCAATGTCTGAAGATTCAGATGACTACCGGTGCTACGACACTCAATTACCCAATGGAAGTCAAACCGATGCAATGGTTAGCCCTTCAACTAGTCCAATGTCATCCCCACACCGATTCCAGAAACCACAATCTGGTCTTTTATCCGCAAACCCGTACCCTCTGCCCAGCTGCTCACTCTCGTCGGTCGTCTGCTCTAATCCTCGTCGTGGCTCTGAAAATGAAGGCCGGTTCCCATCTTCTCCAAATGACATGTG CCATGGAGGTGACCTGAGGAAAACAGCACTACTGAGGTCAGTGCAAATGAGGGTTCAGGGACCACATGCATAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BQ909093             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TCGTGGCTCTGAAAATGAA GCCGGTTCCCATCTTCTCCAAATGACATGTGCCCATGGAGGTGACCTGAGGAAAACAGCGCTACTGAGGTCAGTGCAAATGAGGGTTCAGGGACCACACGCATATGAACTGTCGTTCTGTGGCAGACAAGAACAAGAACATGCACACGACCATGAGGATGAACATCAGCATGAACATCTAGAGGGTTTGGAAGGGGCAGAAAGATCGTCATCACATAGAGAAACAATCAGTGATGGAGTCGGTTACCAGATGCCGGAAAACAGCTATGGGCGACCAGAGCATGATATAGATTACATTGAGGATTGCACCCCGCATGGTTGTCTGAGTGACCTCAAGTTTAAGCAAGAGGACAAGGACTGTAGTAAACTAACCAGCATGGATAAGAATAGGTAGCAGAGAGATCACACCATATGCCATTTTCCTGGAAATTATTTTTGTGGGAGATTATGGCTCATATGCTTATGATAATTCTGATTGATGTTCAATCCACTGTAACCCCTAGTATGAACATGTGCTTTTCAAGATCCTGAAATTGTAACCTTTGAGTAAAATTAACCCCTGAAACTGCGGTATTTTAGCGCCCAAAAAAAAAA]
[-] EMBL CF335913             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TGTG CCATGGAGGTGACCTGAGGAAAACAGCACTACTGAGGTCAGTGCAAATGAGGGTTCAGGGACCACATGCATATGAACTGTCGTTCTGTGGCAGACAAGAACAAGAACATGCACACGACCATGAGGATGAACATCAGCATGAACATCTAGAGGGTTTGGAAGGGGCAGAAAGATCGTCATCACATAGAGAAACAATCAGTGATGGAGTCAGTTACCAGATGCCGGAAAACAGCTATGGGCGACCAGAGCATGATATAGATTACATTGAGGATTGCACCCCGCATGGTTGTCTGAGTGACCTCAAGTTTAAGCAAGAGGACAAGGACTGTAGTAAACTAACCAGCATGGATAAGAATAGGTAGCAGAGAGATCACACCATATGCCATTTTCCTGGAAATTATTTTTGTGGGAGATTATGGCTCATATGCTTATGATAATTCTGATTGATGTTCAATCCACTGTAACCCCTAGTATGAACATGTGCTTTTCGAGATCCTGAAATTGTAACCTTTGAGTAAAATTAACCCCTGAAA TGCGGTATTTTAGCGCCAAAAAAA    ]
[-] EMBL CF337396             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GGGGCAGAAAGATCGTCATCACATAGAGAAACAATCAGTGATGGAGTCAGTTACCAGATGCCGGAAAACAGCTATGGGCGACCAGAGCATGATATAGATTACATTGAGGATTGCACCCCGCATGGTTGTCTGAGTGACCTCAAGTTTAAGCAAGAGGACAAGGACTGTAGTAAACTAACCAGCATGGATAAGAATAGGTAGCAGAGAGATCACACCATATGCCATTTTCCTGGAAATTATTTTTGTGGGAGATTATGGCTCATATGCTTATGATAATTCTGATTGATGTTCAATCCACTGTAACCCCTAGTATGAACATGTGCTTTTCGAGATCCTGAAATTGTAACCTTTGAGTAAAATTAACCCCTGAAAaa                           ]
[-] EMBL CF329749             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TTTTCGAGATCCTGAAATTGTAACCTTTGAGTAAAATTAACCCCTGAAA TGCGGTATTTTAGCGCCAAAAAAAAA  ]




>consensus_10585#0
ATGGACTGAGGAGTAGAAACGGCTTTCCCTTTTCTGTTCTTCCTTCCACTCGCAAACTCT
CCAAGAAGAAGAAGTTGCGAGCCAATCCCCGCTTGCGATCCCGACCTGGCCACGGATGGT
GGGCGGCGGCGGCGGCGGGGAGGCGGCAATGTCGCCGCCTTCGGGCGGCGGGAAGCGCGG
GAGGGATCCGGAGGAGGACGTGTACGTGGACAACCTCCACTCCCACAAGCGCTACCTCAG
CGAGATAATGGCATCCAGTTTGAATGGATTGTCTGTCGGAGATTCACTGGTTGACAATAT
CATGGAGTCCCCTGCGAGGTCGGAGAATACCTCTTATTTCAGGGATGAAATAATATCCCA
ATACTCACCAATGTCTGAAGATTCAGATGACTACCGGTGCTACGACACTCAATTACCCAA
TGGAAGTCAAACCGATGCAATGGTTAGCCCTTCAACTAGTCCAATGTCATCCCCACACCG
ATTCCAGAAACCACAATCTGGTCTTTTATCCGCAAACCCGTACCCTCTGCCCAGCTGCTC
ACTCTCGTCGGTCGTCTGCTCTAATCCTCGTCGTGGCTCTGAAAATGAAGGCCGGTTCCC
ATCTTCTCCAAATGACATGTGCCATGGAGGTGACCTGAGGAAAACAGCACTACTGAGGTC
AGTGCAAATGAGGGTTCAGGGACCACATGCATATGAACTGTCGTTCTGTGGCAGACAAGA
ACAAGAACATGCACACGACCATGAGGATGAACATCAGCATGAACATCTAGAGGGTTTGGA
AGGGGCAGAAAGATCGTCATCACATAGAGAAACAATCAGTGATGGAGTCAGTTACCAGAT
GCCGGAAAACAGCTATGGGCGACCAGAGCATGATATAGATTACATTGAGGATTGCACCCC
GCATGGTTGTCTGAGTGACCTCAAGTTTAAGCAAGAGGACAAGGACTGTAGTAAACTAAC
CAGCATGGATAAGAATAGGTAGCAGAGAGATCACACCATATGCCATTTTCCTGGAAATTA
TTTTTGTGGGAGATTATGGCTCATATGCTTATGATAATTCTGATTGATGTTCAATCCACT
GTAACCCCTAGTATGAACATGTGCTTTTCGAGATCCTGAAATTGTAACCTTTGAGTAAAA
TTAACCCCTGAAATGCGGTATTTTAGCGCCAAAAAAAAAAA

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)