These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10585#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1181 fasta sequence [ATGGACTGAGGAGTAGAAACGGCTTTCCCTTTTCTGTTCTTCCTTCCACTCGCAAACTCTCCAAGAAGAAGAAGTTGCGAGCCAATCCCCGCTTGCGATCCCGACCTGGCCACGGATGGTGGGCGGCGGCGGCGGCGGGGAGGCGGCAATGTCGCCGCCTTCGGGCGGCGGGAAGCGCGGGAGGGATCCGGAGGAGGACGTGTACGTGGACAACCTCCACTCCCACAAGCGCTACCTCAGCGAGATAATGGCATCCAGTTTGAATGGATTGTCTGTCGGAGATTCACTGGTTGACAATATCATGGAGTCCCCTGCGAGGTCGGAGAATACCTCTTATTTCAGGGATGAAATAATATCCCAATACTCACCAATGTCTGAAGATTCAGATGACTACCGGTGCTACGACACTCAATTACCCAATGGAAGTCAAACCGATGCAATGGTTAGCCCTTCAACTAGTCCAATGTCATCCCCACACCGATTCCAGAAACCACAATCTGGTCTTTTATCCGCAAACCCGTACCCTCTGCCCAGCTGCTCACTCTCGTCGGTCGTCTGCTCTAATCCTCGTCGTGGCTCTGAAAATGAAGGCCGGTTCCCATCTTCTCCAAATGACATGTG-CCATGGAGGTGACCTGAGGAAAACAGCACTACTGAGGTCAGTGCAAATGAGGGTTCAGGGACCACATGCATATGAACTGTCGTTCTGTGGCAGACAAGAACAAGAACATGCACACGACCATGAGGATGAACATCAGCATGAACATCTAGAGGGTTTGGAAGGGGCAGAAAGATCGTCATCACATAGAGAAACAATCAGTGATGGAGTCAGTTACCAGATGCCGGAAAACAGCTATGGGCGACCAGAGCATGATATAGATTACATTGAGGATTGCACCCCGCATGGTTGTCTGAGTGACCTCAAGTTTAAGCAAGAGGACAAGGACTGTAGTAAACTAACCAGCATGGATAAGAATAGGTAGCAGAGAGATCACACCATATGCCATTTTCCTGGAAATTATTTTTGTGGGAGATTATGGCTCATATGCTTATGATAATTCTGATTGATGTTCAATCCACTGTAACCCCTAGTATGAACATGTGCTTTTCGAGATCCTGAAATTGTAACCTTTGAGTAAAATTAACCCCTGAAA-TGCGGTATTTTAGCGCCAAAAAAAAAAA] [+] EMBL CF317939 [ATGGACTGAGGAGTAGAAACGGCTTTCCCTTTTCTGTTCTTCCTTCCACTCGCAAACTCTCCAAGAAGAAGAAGTTGCGAGCCAATCCCCGCTTGCGATCCCGACCTGGCCACGGATGGTGGGCGGCGGCGGCGGCGGGGAGGCGGCAATGTCGCCGCCTTCGGGCGGCGGGAAGCGCGGGAGGGATCCGGAGGAGGACGTGTACGTGGACAACCTCCACTCCCACAAGCGCTACCTCAGCGAGATAATGGCATCCAGTTTGAATGGATTGTCTGTCGGAGATTCACTGGTTGACAATATCATGGAGTCCCCTGCGAGGTCGGAGAATACCTCTTATTTCAGGGATGAAATAATATCCCAATACTCACTAATGTCTGAAGATTCAGATGACTACCGGTGCTACGACACTCAATTACCCAATGGAAGTCAAACCGATGCAATGGTTAGCCCTTCAACTAGTCCAATGTCATCCCCACACCGATTCCAGAAACCACAATCTGGTCTTTTATCCGCAAACCCGTACCCTCTGCCCAGCTGCTCACTCTCGTCGGTCGTCTGCTCTAATCCTCGTCGTGGCTCTG AAATGAAGGCCGGTTCCCATCTTCTCC AATGA ] [+] EMBL AK071622 [ TTTTCTGTTCTTCCTTCCACTCGCAAACTCTCCAAGAAGAAGAAGTTGCGAGCCAATCCCCGCTTGCGATCCCGACCTGGCCACGGATGGTGGGCGGCGGCGGCGGCGGGGAGGCGGCAATGTCGCCGCCTTCGGGCGGCGGGAAGCGCGGGAGGGATCCGGAGGAGGACGTGTACGTGGACAACCTCCACTCCCACAAGCGCTACCTCAGCGAGATAATGGCATCCAGTTTGAATGGATTGTCTGTCGGAGATTCACTGGTTGACAATATCATGGAGTCCCCTGCGAGGTCGGAGAATACCTCTTATTTCAGGGATGAAATAATATCCCAATACTCACCAATGTCTGAAGATTCAGATGACTACCGGTGCTACGACACTCAATTACCCAATGGAAGTCAAACCGATGCAATGGTTAGCCCTTCAACTAGTCCAATGTCATCCCCACACCGATTCCAGAAACCACAATCTGGTCTTTTATCCGCAAACCCGTACCCTCTGCCCAGCTGCTCACTCTCGTCGGTCGTCTGCTCTAATCCTCGTCGTGGCTCTGAAAATGAAGGCCGGTTCCCATCTTCTCCAAATGACATGTG CCATGGAGGTGACCTGAGGAAAACAGCACTACTGAGGTCAGTGCAAATGAGGGTTCAGGGACCACATGCATATGAACTGTCGTTCTGTGGCAGACAAGAACAAGAACATGCACACGACCATGAGGATGAACATCAGCATGAACATCTAGAGGGTTTGGAAGGGGCAGAAAGATCGTCATCACATAGAGAAACAATCAGTGATGGAGTCAGTTACCAGATGCCGGAAAACAGCTATGGGCGACCAGAGCATGATATAGATTACATTGAGGATTGCACCCCGCATGGTTGTCTGAGTGACCTCAAGTTTAAGCAAGAGGACAAGGATTGTAGTAAACTAACCAGCATGGATAAGAATAGGTAGCAGAGAGATCACACCATATGCCATTTTCCTGGAAATTATTTTTGTGGGAGATTATGGCTCATATGCTTATGATAATTCTGATTGATGTTCAATCCACTGTAACCCCTAGTATGAACATGTGCTTTTCGAGATCCTGAAATTGTAACCTTTGAGTAAAATTAACCCCTGAAA TGCGGTA ] [+] EMBL BP184877 [ acgaggAAACTCTCCAAGAAGAAGAAGTTGCGAGCCAATCCCCGCTTGCGATCCCGACCTGGCCACGGATGGTGGGCGGCGGCGGCGGCGGGGAGGCGGCAATGTCGCCGCCTTCGGGCGGCGGGAAGCGCGGGAGGGATCCGGAGGAGGACGTGTACGTGGACAACCTCCACTCCCACAAGCGCTACCTCAGCGAGATAATGGCATCCAGTTTGAATGGATTGTCTGTCGGAGATTCACTGGTTGACAATATCATGGAGTCCCCTGCGAGGTCGGAGAATACCTCTTATTTCAGGGATGAAATAATATCCCAATACTCACCAATGTCTGAAGATTCAGATGACTACCGGTGCTACGACACTCAATTACCCAATGGAAGTCAAACCGATGCAATGGTTAGCCCTTCAACTAGTCCAATGTCATCCCCACACCGATTCCAGAAACCACAATCTGGTCTTTTATCCGCAAACCCGTACCCTCTGCCCAGCTGCTCACTCTCGTCGGTCGTCTGCTCTAATCCTCGTCGTGGCTCTGAAAATGAAGGCCGGTTCCCATCTTCTCCAAATGACATGTG CCATGGAGGTGACCTGAGGAAAACAGCACTACTGAGGTCAGTGCAAATGAGGGTTCAGGGACCACATGCATAT ] [+] EMBL BQ909093 [ TCGTGGCTCTGAAAATGAA GCCGGTTCCCATCTTCTCCAAATGACATGTGCCCATGGAGGTGACCTGAGGAAAACAGCGCTACTGAGGTCAGTGCAAATGAGGGTTCAGGGACCACACGCATATGAACTGTCGTTCTGTGGCAGACAAGAACAAGAACATGCACACGACCATGAGGATGAACATCAGCATGAACATCTAGAGGGTTTGGAAGGGGCAGAAAGATCGTCATCACATAGAGAAACAATCAGTGATGGAGTCGGTTACCAGATGCCGGAAAACAGCTATGGGCGACCAGAGCATGATATAGATTACATTGAGGATTGCACCCCGCATGGTTGTCTGAGTGACCTCAAGTTTAAGCAAGAGGACAAGGACTGTAGTAAACTAACCAGCATGGATAAGAATAGGTAGCAGAGAGATCACACCATATGCCATTTTCCTGGAAATTATTTTTGTGGGAGATTATGGCTCATATGCTTATGATAATTCTGATTGATGTTCAATCCACTGTAACCCCTAGTATGAACATGTGCTTTTCAAGATCCTGAAATTGTAACCTTTGAGTAAAATTAACCCCTGAAACTGCGGTATTTTAGCGCCCAAAAAAAAAA] [-] EMBL CF335913 [ TGTG CCATGGAGGTGACCTGAGGAAAACAGCACTACTGAGGTCAGTGCAAATGAGGGTTCAGGGACCACATGCATATGAACTGTCGTTCTGTGGCAGACAAGAACAAGAACATGCACACGACCATGAGGATGAACATCAGCATGAACATCTAGAGGGTTTGGAAGGGGCAGAAAGATCGTCATCACATAGAGAAACAATCAGTGATGGAGTCAGTTACCAGATGCCGGAAAACAGCTATGGGCGACCAGAGCATGATATAGATTACATTGAGGATTGCACCCCGCATGGTTGTCTGAGTGACCTCAAGTTTAAGCAAGAGGACAAGGACTGTAGTAAACTAACCAGCATGGATAAGAATAGGTAGCAGAGAGATCACACCATATGCCATTTTCCTGGAAATTATTTTTGTGGGAGATTATGGCTCATATGCTTATGATAATTCTGATTGATGTTCAATCCACTGTAACCCCTAGTATGAACATGTGCTTTTCGAGATCCTGAAATTGTAACCTTTGAGTAAAATTAACCCCTGAAA TGCGGTATTTTAGCGCCAAAAAAA ] [-] EMBL CF337396 [ GGGGCAGAAAGATCGTCATCACATAGAGAAACAATCAGTGATGGAGTCAGTTACCAGATGCCGGAAAACAGCTATGGGCGACCAGAGCATGATATAGATTACATTGAGGATTGCACCCCGCATGGTTGTCTGAGTGACCTCAAGTTTAAGCAAGAGGACAAGGACTGTAGTAAACTAACCAGCATGGATAAGAATAGGTAGCAGAGAGATCACACCATATGCCATTTTCCTGGAAATTATTTTTGTGGGAGATTATGGCTCATATGCTTATGATAATTCTGATTGATGTTCAATCCACTGTAACCCCTAGTATGAACATGTGCTTTTCGAGATCCTGAAATTGTAACCTTTGAGTAAAATTAACCCCTGAAAaa ] [-] EMBL CF329749 [ TTTTCGAGATCCTGAAATTGTAACCTTTGAGTAAAATTAACCCCTGAAA TGCGGTATTTTAGCGCCAAAAAAAAA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||