These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10586#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1377 fasta sequence [CAGCATATCTCTTGCTATCTTGCAATTGCAAATTAGTTATACTCGTAGCTACTGCGCGCGCACTAATTGACTACACAAGCAAATATGGGTTCTCCTTCTGCCAAGTACTTGCTGTTTAGCCTTGCAATCCTGCTGGTCCTGAGTAGCCAGCAGCAAGCTCTGCTGCCTTCGGCATTCGCCCGCCAGTTGGTTCCGATGCCCACGAACACTGCCGCCGGTAAGAATAACATCAGTGTTAATTACCAGTTCCATCTGTATATGTTTTGTGAAATATCATGTGGAGAAACTAACCACTACATCTCTTTGAACATTTGGAGTTGCGGTTCTTTCTTCTAGCGTGTGTTTGGCCCTCCCCTTTTTAACCTCTACTCTCTTATTTCTACTTGCATGTTTCTCGAACTATTAAACGATAATTTTTTTAAAAAGTTATGTATATAAAAAAACTATTTTTAAAAAATATTAATTTTTTCTTCTAATTTTGATAAGCTAATACTTAATTAATCATATGGTTACGAGTCCCTCCATTTTTGCATGTGCCCAAGACCTTCATTGCGAAACAAAGCCTTAATTAAGTATAGCTAGCTATGTCTACATACTTTCTCTATTTAAAATATAATAATTGCCTCAGATTTAAATTTATCGAGGAGGAATTACTTTGAACGTTTTCTGGTTTAGTATATATTTTTTTATATATATTGGATTTTTTTTTGAAGTAACACATACTCCTACGTACATTAATTAACTGTTTCCATTCGCATGCGTGATGGAGCAATCGACAGGCCACGCAGATGTCACGGAGGAAAAGCCTAGCGTCCCGCCGTCGAGCGTAACAAAGATCTGCCGAGTTTTACGTATCTGCAAACGATCATCGTCGGCCGCAACATCGGCCAAGCCGTGATGTGTCAACGACGGCAAATGCATGCACGCGGGAATAAATAATGGAGGCACCGATTAGGATCAACAATATGGTTAGTCCATTAAATATGTGTGTAAGCTCGATCGATATGGAATAATGAGAAACAAATAAACAATGAGAAACAAATATTCACCATGTTTATTACTACCTCTGTTTTCAAATAAATAGTATTGATTAGTGTAATTTTGAACTAACCGGCATCAAACAAAAAGAAACAGAGAGATACTTGTTTACGTTACTTCTTTTGTATACGTATCCAGCCGCGATGTTCGGAAACTGTGTAGGATCGAGATTGGCATCGATCAGTAAGGGCATCAACAATGTTACTTTTTAGCTGCCGGTAAGAAGCATTAAATGCTCTTTTCCTATCCGGTAGCAAGCTCTGTGAGAGTGGCGAAGAATTAAAATCTGGTGATAATATCTATTACCGGTATATTACTACCGGTGAAGAAGAGATAAAT] [+] EMBL AK069626 [CAGCATATCTCTTGCTATCTTGCAATTGCAAATTAGTTATACTCGTAGCTACTGCGCGCGCACTAATTGACTACACAAGCAAATATGGGTTCTCCTTCTGCCAAGTACTTGCTGTTTAGCCTTGCAATCCTGCTGGTCCTGAGTAGCCAGCAGCAAGCTCTGCTGCCTTCGGCATTCGCCCGCCAGTTGGTTCCGATGCCCACGAACACTGCCGCCGGTAAGAATAACATCAGTGTTAATTACCAGTTCCATCTGTATATGTTTTGTGAAATATCATGTGGAGAAACTAACCACTACATCTCTTTGAACATTTGGAGTTGCGGTTCTTTCTTCTAGCGTGTGTTTGGCCCTCCCCTTTTTAACCTCTACTCTCTTATTTCTACTTGCATGTTTCTCGAACTATTAAACGATAATTTTTTTAAAAAGTTATGTATATAAAAAAACTATTTTTAAAAAATATTAATTTTTTCTTCTAATTTTGATAAGCTAATACTTAATTAATCATATGGTTACGAGTCCCTCCATTTTTGCATGTGCCCAAGACCTTCATTGCGAAACAAAGCCTTAATTAAGTATAGCTAGCTATGTCTACATACTTTCTCTATTTAAAATATAATAATTGCCTCAGATTTAAATTTATCGAGGAGGAATTACTTTGAACGTTTTCTGGTTTAGTATATATTTTTTTATATATATTGGATTTTTTTTTGAAGTAACACATACTCCTACGTACATTAATTAACTGTTTCCATTCGCATGCGTGATGGAGCAATCGACAGGCCACGCAGATGTCACGGAGGAAAAGCCTAGCGTCCCGCCGTCGAGCGTAACAAAGATCTGCCGAGTTTTACGTATCTGCAAACGATCATCGTCGGCCGCAACATCGGCCAAGCCGTGATGTGTCAACGACGGCAAATGCATGCACGCGGGAATAAATAATGGAGGCACCGATTAGGATCAACAATATGGTTAGTCCATTAAATATGTGTGTAAGCTCGATCGATATGGAATAATGAGAAACAAATAAACAATGAGAAACAAATATTCACCATGTTTATTACTACCTCTGTTTTCAAATAAATAGTATTGATTAGTGTAATTTTGAACTAACCGGCATCAAACAAAAAGAAACAGAGAGATACTTGTTTACGTTACTTCTTTTGTATACGTATCCAGCCGCGATGTTCGGAAACTGTGTAGGATCGAGATTGGCATCGATCAGTAAGGGCATCAACAATGTTACTTTTTAGCTGCCGGTAAGAAGCATTAAATGCTCTTTTCCTATCCGGTAGCAAGCTCTGTGAGAGTGGCGAAGAATTAAAATCTGGTGATAATATCTATTACCGGTATATTACTACCGGTGAAGAAGAGATAAAT] consensusID : consensus_10586#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 530 fasta sequence [GGGTGCAACTGCATCAAAACCATTCAGCATATCTCTTGCTATCTT-GCAATTGCAAATTAGTTATACTCGTAGCTACT-GCGCGCGCACTAATTGACTACACAAGCAAATATGGGTTCTCCTTCTGCCAAGTACTTGCTGTTTAGCCTTGCAATCCTGCTGGTCCTGAGTAGCCAGCAGCAAGCTCT-GCTGCCTTCGGCATTCGCCCGCCAGTTGGTTCCGATGCCCACGAACACTGCCGCCGGCCACGCAGATGTCACGGAGGAAAAGCCTAGCGTCCCGCCGTCGAGCGTAACAAAGATCTGCCGAGTTTTACGTATCTGCAAACGATCATCGTCGGCCGCAACATCGGCCAAGCCGTGATGTGTCAACGACGGCAAATGCATGCACGCGGGAATAAATAATGGAGGCACCGATTAGGATCAACAATATGGTTAGTCCATTAAATATGTGTGTAAGCTCGATCGATATGGAATAATGAGAAACAAATAAACAATGAGAAACAAATATTCACCATGTTAAAAAAAACCTCT] [+] EMBL AU162620 [GGGTGCAACTGCATCAAAACCATTCAGCATATCTCTTGCTATCTTGGCAATTGCAAATTAGTTATACTCGTAGCTACTGGCGCGCGCACTAATTGACTACACAAGCAAATATGGGTTCTCCTTCTGCCAAGTACTTGCTGTTTAGCCTTGCAATCCTGCTGGTCCTGAGTAGCCAGCAGCAAGCTCTGGCT CCTTCGGCATTCGCCCGCCAGTTGGTTCCGATGCCCACGAACACTGCCGCCGGCCACGCAGATGTCACGGAGGAAAAGCCTAGCGTCCCGCCGTCGAGCGTAACAAAGATCTGCCGAGTTTTACGTATCTGCAAACGATCATCGTCGGCCGCAACATCGGCCAAGCCGTGATGTGTCAACGACGGCAAATGCATGCACGCGGGAATAAATAATGGAGGCACCGATTAGGATCAACAATATGGTTAGTCCATTAAATATGTGTGTAAGCTCGATCGATATGGAATAATGAGAAACAAATAAACAATGAGAAACAAAaa ] [+] EMBL AU071077 [ AAACATTCAGCATATCTCTTGCTATCTT GCAATTGCAAATTAGTTATACTCGTAGCTACT GCGCGCGCACTAATTGACTACACAAGCAAATATGGGTTCTCCTTCTGCCAAGTACTTGCTGTTTAGCCTTGCAATCCTGCTGGTCCTGAGTAGCCAGCAGCAAGCTCT GCTGCCTTCGGCATTCGCCCGCCAGTTGGTTCCGATGCCCACGAACACTGCCGCCGGCCACGCAGATGTCACGGAGGAAAAGCCTAGCGTCCCGCCGTCGAGCGTAACAAAGATCTGCCGAGTTTTACGTATC ] [+] EMBL CF330229 [ TTCAGCATATCTCTTGCTATCTT GCAATTGCAAATTAGTTATACTCGTAGCTACT GCGCGCGCACTAATTGACTACACAAGCAAATATGGGTTCTCCTTCTGCCAAGTACTTGCTGTTTAGCCTTGCAATCCTGCTGGTCCTGAGTAGCCAGCAGCAAGCTCT GCTGCCTTCGGCATTCGCCCGCCAGTTGGTTCCGATGCCCACGAACACTGCCGCCGGCCACGCAGATGTCACGGAGGAAAAGCCTAGCGTCCCGCCGTCGAGCGTAACAAAGATCTGCCGAGTTTTACGTATCCGCAAACGATCATCGTCGGCCGCAACATCGGCCAAGCCGTGATGTGTCAACGACGGCAAATGCATGCACGCGGGAATAAATAATGGAGGCACCGATTAGGATCAACAATATGGTTAGTCCATTAAATATGTGTGTAAGCTCGATCGATATGGAATAATGAGAAACAAATAAACAATGAGAAACAAATATTCACCATGTTAAAAAA ] [-] EMBL CF330230 [ TCTCTTGCTATCTT GCAATTGCAAATTAGTTATACTCGTAGCTACT GCGCGCGCACTAATTGACTACACAAGCAAATATGGGTTCTCCTTCTGCCAAGTACTTGCTGTTTAGCCTTGCAATCCTGCTGGTCCTGAGTAGCCAGCAGCAAGCTCT GCTGCCTTCGGCATTCGCCCGCCAGTTGGTTCCGATGCCCACGAACACTGCCGCCGGCCACGCAGATGTCACGGAGGAAAAGCCTAGCGTCCCGCCGTCGAGCGTAACAAAGATCTGCCGAGTTTTACGTATCCGCAAACGATCATCGTCGGCCGCAACATCGGCCAAGCCGTGATGTGTCAACGACGGCAAATGCATGCACGCGGGAATAAATAATGGAGGCACCGATTAGGATCAACAATATGGTTAGTCCATTAAATATGTGTGTAAGCTCGATCGATATGGAATAATGAGAAACAAATAAACAATGAGAAACAAATATTCACCATGTTAAAAAAA ] [+] EMBL CA756182 [ AATTGCAAATTAGTTATACTCGTAGCTACT GCGCGCGCACTAATTGACTACACAAGCAAATATGGGTTCTCCTTCTGCCAAGTACTTGCTGTTTAGCCTTGCAATCCTGCTGGTCCTGAGTAGCCAGCAGCAAGCTCT GCTGCCTTCGGCATTCGCCCGCCAGTTGGTTCCGATGCCCACGAACACTGCCGCCGGCCACGCAGATGTCACGGAGGAAAAGCCTAGCGTCCCGCCGTCGAGCGTAACAAAGATCTGCCGAGTTTTACGTATCTGCAAACGATCATCGTCGGCCGCAACATCGGCCAAGCCGTGATGTGTCAACGACGGCAAATGCATGCACGCGGGAATAAATAATGGAGGCACCGATTAGGATCAACAATATGGTTAGTCCATTAAATATGTGTGTAAGCTCGATCGATATGGAATAATGAGAAACAAATAAACAATGAGAAACAAATATTCACCATGTTTATTACTACCTCT] consensusID : consensus_10586#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 469 fasta sequence [AAATTAGTTATACTCGTAGCTACTGCGCGCGCACTAATTGACTACACAAGCAAATATGGGTTCTCCTTCTGCCAAGTACTTGCTGTTTAGCCTTGCAATCCTGCTGGTCCTGAGTAGCCAGCAGCAAGCTCTGCTGCCTTCGGCATTCGCCCGCCAGTTGGTTCCGATGCCCACGAACACTGCCGCCGGCCACGCAGATGTCACGGAGGAAAAGCCTAGCGTCCCGCCGTCGAGCGTAACAAAGATCTGCCGAGTTTTACGTATCTGCAAACGATCATCGTCGGCCGCAACATCGGCCAAGCCGTGATGTGTCAACGACGGCAAATGCATGCACGCGGGAATAAATAATGGAGGCACCGATTAGGATCAACAATATGGTTAGTCCATTAAATATGTGTGTAAGCTCGATCGATATGGAATAATGAGAAACAAATAAACAATGAGAAACAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU071231 [AAATTAGTTATACTCGTAGCTACTGCGCGCGCACTAATTGACTACACAAGCAAATATGGGTTCTCCTTCTGCCAAGTACTTGCTGTTTAGCCTTGCAATCCTGCTGGTCCTGAGTAGCCAGCAGCAAGCTCTGCTGCCTTCGGCATTCGCCCGCCAGTTGGTTCCGATGCCCACGAACACTGCCGCCGGCCACGCAGATGTCACGGAGGAAAAGCCTAGCGTCCCGCCGTCGAGCGTAACAAAGATCTGCCGAGTTTTACGTATCTGCAAACGATCATCGTCGGCCGCAACATCGGCCAAGCCGTGATGTGTCAACGACGGCAAATGCATGCACGCGGGAATAAATAATGGAGGCACCGATTAGGATCAACAATATGGTTAGTCCATTAAATATGTGTGTAAGCTCGATCGATATGGAATAATGAGAAACAAATAAACAATGAGAAACAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10586#1 ------------------------------------------------------------ consensus_10586#2 ------------------------------------------------------------ consensus_10586#0 CAGCATATCTCTTGCTATCTTGCAATTGCAAATTAGTTATACTCGTAGCTACTGCGCGCG 60 consensus_10586#1 ------------------------------------------------------------ consensus_10586#2 ------------------------------------------------------------ consensus_10586#0 CACTAATTGACTACACAAGCAAATATGGGTTCTCCTTCTGCCAAGTACTTGCTGTTTAGC 120 consensus_10586#1 ------------------------------------------------------------ consensus_10586#2 ------------------------------------------------------------ consensus_10586#0 CTTGCAATCCTGCTGGTCCTGAGTAGCCAGCAGCAAGCTCTGCTGCCTTCGGCATTCGCC 180 consensus_10586#1 ------------------------------------------------------------ consensus_10586#2 ------------------------------------------------------------ consensus_10586#0 CGCCAGTTGGTTCCGATGCCCACGAACACTGCCGCCGGTAAGAATAACATCAGTGTTAAT 240 consensus_10586#1 ------------------------------------------------------------ consensus_10586#2 ------------------------------------------------------------ consensus_10586#0 TACCAGTTCCATCTGTATATGTTTTGTGAAATATCATGTGGAGAAACTAACCACTACATC 300 consensus_10586#1 ------------------------------------------------------------ consensus_10586#2 ------------------------------------------------------------ consensus_10586#0 TCTTTGAACATTTGGAGTTGCGGTTCTTTCTTCTAGCGTGTGTTTGGCCCTCCCCTTTTT 360 consensus_10586#1 ------------------------------------------------------------ consensus_10586#2 ------------------------------------------------------------ consensus_10586#0 AACCTCTACTCTCTTATTTCTACTTGCATGTTTCTCGAACTATTAAACGATAATTTTTTT 420 consensus_10586#1 ------------------------------------------------------------ consensus_10586#2 ------------------------------------------------------------ consensus_10586#0 AAAAAGTTATGTATATAAAAAAACTATTTTTAAAAAATATTAATTTTTTCTTCTAATTTT 480 consensus_10586#1 ------------------------------------------------------------ consensus_10586#2 ------------------------------------------------------------ consensus_10586#0 GATAAGCTAATACTTAATTAATCATATGGTTACGAGTCCCTCCATTTTTGCATGTGCCCA 540 consensus_10586#1 -GGGTGCAACTGCATCAAAACCATTCAGCATATCTCTTGCTATCTTGCAATTGCAAATTA 59 consensus_10586#2 ------------------------------------------------------AAATTA 6 consensus_10586#0 AGACCTTCATTGCGAAACAAAGCCTTAAT-TAAGTATAGCTAGCT-ATGTCTACATACTT 598 * * * consensus_10586#1 GTTATACTCGTAGC-TACTGCGCGCGCACTAATTGACTACA-CAAGCAAATATGGGTTCT 117 consensus_10586#2 GTTATACTCGTAGC-TACTGCGCGCGCACTAATTGACTACA-CAAGCAAATATGGGTTCT 64 consensus_10586#0 TCTCTATTTAAAATATAATAATTGCCTCAGATTTAAATTTATCGAGGAGGAATTACTTTG 658 * ** * * ** * ** * ** * * * * ** * ** ** consensus_10586#1 CCTTCTGCCAAGTACTTGCTGTTTAGCCTTGCAATCCTGCTGGTCCTGAGTAGCCAGCAG 177 consensus_10586#2 CCTTCTGCCAAGTACTTGCTGTTTAGCCTTGCAATCCTGCTGGTCCTGAGTAGCCAGCAG 124 consensus_10586#0 AACGTTTTCTGGT--TTAGTATATATTTTTTTATATATATTGGATTTTTTTTTGAAGTAA 716 * * ** ** * * ** ** * * *** * * ** * consensus_10586#1 CAAGCTCTGCTGCCTTCGGCATTCGCCCGCCAGTTGGTTCCGATGCCCACGAACACTGCC 237 consensus_10586#2 CAAGCTCTGCTGCCTTCGGCATTCGCCCGCCAGTTGGTTCCGATGCCCACGAACACTGCC 184 consensus_10586#0 CACATACTCCTACGTACATTAATTAACTGTT--TCCATTCGCATGCGTGATGGAGCAATC 774 ** ** ** * * * * * * * * *** **** * * consensus_10586#1 GCC-GGCCACGCAGATGTCACGGAGGAAAAGCCTAGCGTCCCGCCGTCGAGCGTAACAAA 296 consensus_10586#2 GCC-GGCCACGCAGATGTCACGGAGGAAAAGCCTAGCGTCCCGCCGTCGAGCGTAACAAA 243 consensus_10586#0 GACAGGCCACGCAGATGTCACGGAGGAAAAGCCTAGCGTCCCGCCGTCGAGCGTAACAAA 834 * * ******************************************************** consensus_10586#1 GATCTGCCGAGTTTTACGTATCTGCAAACGATCATCGTCGGCCGCAACATCGGCCAAGCC 356 consensus_10586#2 GATCTGCCGAGTTTTACGTATCTGCAAACGATCATCGTCGGCCGCAACATCGGCCAAGCC 303 consensus_10586#0 GATCTGCCGAGTTTTACGTATCTGCAAACGATCATCGTCGGCCGCAACATCGGCCAAGCC 894 ************************************************************ consensus_10586#1 GTGATGTGTCAACGACGGCAAATGCATGCACGCGGGAATAAATAATGGAGGCACCGATTA 416 consensus_10586#2 GTGATGTGTCAACGACGGCAAATGCATGCACGCGGGAATAAATAATGGAGGCACCGATTA 363 consensus_10586#0 GTGATGTGTCAACGACGGCAAATGCATGCACGCGGGAATAAATAATGGAGGCACCGATTA 954 ************************************************************ consensus_10586#1 GGATCAACAATATGGTTAGTCCATTAAATATGTGTGTAAGCTCGATCGATATGGAATAAT 476 consensus_10586#2 GGATCAACAATATGGTTAGTCCATTAAATATGTGTGTAAGCTCGATCGATATGGAATAAT 423 consensus_10586#0 GGATCAACAATATGGTTAGTCCATTAAATATGTGTGTAAGCTCGATCGATATGGAATAAT 1014 ************************************************************ consensus_10586#1 GAGAAACAAATAAACAATGAGAAACAAATATTCACCATGTTAAAAAAAACCTCT------ 530 consensus_10586#2 GAGAAACAAATAAACAATGAGAAACAAAAA---AAAAAAAAAAAAAAAA----------- 469 consensus_10586#0 GAGAAACAAATAAACAATGAGAAACAAATATTCACCATGTTTATTACTACCTCTGTTTTC 1074 **************************** * * * * * * consensus_10586#1 ------------------------------------------------------------ consensus_10586#2 ------------------------------------------------------------ consensus_10586#0 AAATAAATAGTATTGATTAGTGTAATTTTGAACTAACCGGCATCAAACAAAAAGAAACAG 1134 consensus_10586#1 ------------------------------------------------------------ consensus_10586#2 ------------------------------------------------------------ consensus_10586#0 AGAGATACTTGTTTACGTTACTTCTTTTGTATACGTATCCAGCCGCGATGTTCGGAAACT 1194 consensus_10586#1 ------------------------------------------------------------ consensus_10586#2 ------------------------------------------------------------ consensus_10586#0 GTGTAGGATCGAGATTGGCATCGATCAGTAAGGGCATCAACAATGTTACTTTTTAGCTGC 1254 consensus_10586#1 ------------------------------------------------------------ consensus_10586#2 ------------------------------------------------------------ consensus_10586#0 CGGTAAGAAGCATTAAATGCTCTTTTCCTATCCGGTAGCAAGCTCTGTGAGAGTGGCGAA 1314 consensus_10586#1 ------------------------------------------------------------ consensus_10586#2 ------------------------------------------------------------ consensus_10586#0 GAATTAAAATCTGGTGATAATATCTATTACCGGTATATTACTACCGGTGAAGAAGAGATA 1374 consensus_10586#1 --- consensus_10586#2 --- consensus_10586#0 AAT 1377 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||