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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10587#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 742 fasta sequence
[TTTTTTTGGCGTTGACAATACTACTCTTCTTGATTAGTGCTTTCTAAGTTGGGAAGTGACAGTACAAATTTAGTCAAGGTATACAGCTTAATTAACTGTAGAAAACCCTCTTTTTTAATACATTTTTTCCACGCTCTGTAGTTCTTTCGCATCTAATCCCCGATCTGAACAATTGACCAAATAATGTGTTACTGATAGCTTTGAGATAACTTCAAGCTCATAGATACATTTTGTAGCGGCATTTCTCTGAAACATGAATTTTACAACGGCATACGCCCAAATTTCCAACGAAAAACAGTGTCCATTTCGTTGTCCTGAATCCACTGCAATGGCATTCGAGCTCATGGAGCTCGCACGGCCGCATTGTCATGACATACCTGTAGACAGAATTAGTGAAATGGATATGAATTCAGACCTGGAGCAGAATGACCGAAATGTTGAGAG-TTTGGTGCAATAACA-GAAAAGTTTCTCCTACCGCTGCTGATGCTGATGCCATGGACGATTAAACCCATAATATAAACTCTGCAAACTTCCACAGAACAGCCTAGCAGCAGGAATGGAAGAGGCAAGCACAGGAGAGAGAGGCAAAAGTGAAGTCCAGCTTCAAACTGAATCTCCTGCTCCTCTGCATGCCCCTTCCACTGCTGCTGCTACAGCCAAAAAACCAGACCTAACATAACACCTACCTATCCCAAACCAAATTTTGCTGTGGCTGCTGCTGATTTTCTACTCCTTCAGTCCA]
[+] EMBL CF330401 [TTTTTTTGGCGTTGACAATACTACTCTTCTTGATTAGTGCTTTCTAAGTTGGGAAGTGACAGTACAAATTTAGTCAAGGTATACAGCTTAATTAACTGTAGAAAACCCTCTTTTTTAATACATTTTTTCCACGCTCTGTAGTTCTTTCGCATCTAATCCCCGATCTGAACAATTGACCAAATAATGTGTTACTGATAGCTTTGAGATAACTTCAAGCTCATAGATACATTTTGTAGCGGCATTTCTCTGAAACATGAATTTTACAACGGCATACGCCCAAATTTCCAACGAAAAACAGTGTCCATTTCGTTGTCCTGAATCCACTGCAATGGCATTCGAGCTCATGGAGCTCGCACGGCCGCATTGTCATGACATACCTGTAGACAGAATTAGTGAAATGGATATGAATTCAGACCTGGAGCAGAATGACCGAAATGTTGAGAGTTTTGGTGCAATAACAGGAAAAGTTTCTCCTACCGCTGCT ]
[-] EMBL AK073820 [ TGTGTTACTGATAGCTTTGAGATAACTTCAAGCTCATAGATACATTTTGTAGCGGCATTTCTCTGAAACATGAATTTTACAACGGCATACGCCCAAATTTCCAACGAAAAACAGTGTCCATTTCGTTGTCCTGAATCCACTGCAATGGCATTCGAGCTCATGGAGCTCGCACGGCCGCATTGTCATGACATACCTGTAGACAGAATTAGTGAAATGGATATGAATTCAGACCTGGAGCAGAATGACCGAAATGTTGAGAG TTTGGTGCAATAACA GAAAAGTTTCTCCTACCGCTGCTGATGCTGATGCCATGGACGATTAAACCCATAATATAAACTCTGCAAACTTCCACAGAACAGCCTAGCAGCAGGAATGGAAGAGGCAAGCACAGGAGAGAGAGGCAAAAGTGAAGTCCAGCTTCAAACTGAATCTCCTGCTCCTCTGCATGCCCCTTCCACTGCTGCTGCTACAGCCAAAAAACCAGACCTAACATAACACCTACCTATCCCAAACCAAATTTTGCTGTGGCTG ]
[-] EMBL AK099390 [ TGTGTTACTGATAGCTTTGAGATAACTTCAAGCTCATAGATACATTTTGTAGCGGCATTTCTCTGAAACATGAATTTTACAACGGCATACGCCCAAATTTCCAACGAAAAACAGTGTCCATTTCGTTGTCCTGAATCCACTGCAATGGCATTCGAGCTCATGGAGCTCGCACGGCCGCATTGTCATGACATACCTGTAGACAGAATTAGTGAAATGGATATGAATTCAGACCTGGAGCAGAATGACCGAAATGTTGAGAG TTTGGTGCAATAACA GAAAAGTTTCTCCTACCGCTGCTGATGCTGATGCCATGGACGATTAAACCCATAATATAAACTCTGCAAACTTCCACAGAACAGCCTAGCAGCAGGAATGGAAGAGGCAAGCACAGGAGAGAGAGGCAAAAGTGAAGTCCAGCTTCAAACTGAATCTCCTGCTCCTCTGCATGCCCCTTCCACTGCTGCTGCTACAGCCAAAAAACCAGACCTAACATAACACCTACCTATCCCAAACCAAATTTTGCTGTGGCTG ]
[-] EMBL CF330400 [ TTTTGTAGCGGCATTTCTCTGAAACATGAATTTTACAACGGCATACGCCCAAATTTCCAACGAAAAACAGTGTCCATTTCGTTGTCCTGAATCCACTGCAATGGCATTCGAGCTCATGGAGCTCGCACGGCCGCATTGTCATGACATACCTGTAGACAGAATTAGTGAAATGGATATGAATTCAGACCTGGAGCAGAATGACCGAAATGTTGAGAG TTTGGTGCAATAACA GAAAAGTTTCTCCTACCGCTGCTGATGCTGATGCCATGGACGATTAAACCCATAATATAAACTCTGCAAACTTCCACAGAACAGCCTAGCAGCAGGAATGGAAGAGGCAAGCACAGGAGAGAGAGGCAAAAGTGAAGTCCAGCTTCAAACTGAATCTCCTGCTCCTCTGCATGCCCCTTCCACTGCTGCTGCTACAGCCAAAAAACCAGACCTAACATAACACCTACC ATCCCAAACCAAATTTTGCTGTGGCTGCTGCTGATTTTCTACTCCTTCAGTCCA]
consensusID : consensus_10587#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 535 fasta sequence
[TACAGCTTAATTAACTGTAGAAAACCCTCTTTTTTAATACATTTTTTCCACGCTCTGTAGTTCTTTCGCATCTAATCCCCGATCTGAACAATTGACCAAA-TAATGTGTTACTGATAGC-TTTGAGATAACTTCAAGCTCATAGATACATTTTGTAGCGGCATTTCTCTGAAACATGAATTTTACAACGGCATACGCCCAAATTT-CCAACGAAAAACAGTGTCCATTTCGTTGTCCTGAATCCACTGCAATGGCATTCGAGCTCATGGAGCTCGCACGGCCGCATTGTCATGACATACCGCTGCTGATGCTGATGCCATGGACGATTAAACCCATAATATAAACTCTGCAAACTTCCACAGAACAGCCTAGCAGCAGGAATGGAAGAGGCAAGCACAGGAGAGAGAGGCAAAAGTGAAGTCCAGCTTCAAACTGAATCTCCTGCTCCTCTGCATGCCCCTTCCACTGCTGCTGCTACAGCCAAAAAACCAGACCTAACATAACACCTACCTATCCCAAACCAAATTTTGCTGTGGCT]
[-] EMBL AK063857 [TACAGCTTAATTAACTGTAGAAAACCCTCTTTTTTAATACATTTTTTCCACGCTCTGTAGTTCTTTCGCATCTAATCCCCGATCTGAACAATTGACCAAA TAATGTGTTACTGATAGC TTTGAGATAACTTCAAGCTCATAGATACATTTTGTAGCGGCATTTCTCTGAAACATGAATTTTACAACGGCATACGCCCAAATTT CCAACGAAAAACAGTGTCCATTTCGTTGTCCTGAATCCACTGCAATGGCATTCGAGCTCATGGAGCTCGCACGGCCGCATTGTCATGACATACCGCTGCTGATGCTGATGCCATGGACGATTAAACCCATAATATAAACTCTGCAAACTTCCACAGAACAGCCTAGCAGCAGGAATGGAAGAGGCAAGCACAGGAGAGAGAGGCAAAAGTGAAGTCCAGCTTCAAACTGAATCTCCTGCTCCTCTGCATGCCCCTTCCACTGCTGCTGCTACAGCCAAAAAACCAGACCTAACATAACACCTACCTATCCCAAACCAAATTTTGCTGTGGCT]
[-] EMBL AU078206 [ CAAATTAATGTGTTACTGATAGCTTTTGAGATAACTTCAAGCTCATAGATACATTTTGTAGCGGCATTTCTCTGAAACATGAATTTTACAAACG ATACGCCCAAATTTCCCAACGAAAAACAGTGTCCATTTCGTTGTCCTGAATCCACTGCAATGGCATNTNA CTCATGGAGCTCGCACGGCCGCATTGTCATGACATACCGCTGCTGATGCTGATGCCATGGACGATTAAACCCATAATATAAACTCTGCAAACTTCCACAGAACAGCCTAGCAGCAGGAATGGAAGAGGCAAGCACAGGAGAGAGAGGCAAAAGTGAAGTCCAGCTTCAAACTGAATCTCCTGCTCCTCTGCATGCCCCTTCCACTGCTGCTGCTACAGCCAAAAAACCAGACCTAACATAACACCTACCTATCCCAAAC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10587#0 TTTTTTTGGCGTTGACAATACTACTCTTCTTGATTAGTGCTTTCTAAGTTGGGAAGTGAC 60
consensus_10587#1 ------------------------------------------------------------
consensus_10587#0 AGTACAAATTTAGTCAAGGTATACAGCTTAATTAACTGTAGAAAACCCTCTTTTTTAATA 120
consensus_10587#1 ---------------------TACAGCTTAATTAACTGTAGAAAACCCTCTTTTTTAATA 39
***************************************
consensus_10587#0 CATTTTTTCCACGCTCTGTAGTTCTTTCGCATCTAATCCCCGATCTGAACAATTGACCAA 180
consensus_10587#1 CATTTTTTCCACGCTCTGTAGTTCTTTCGCATCTAATCCCCGATCTGAACAATTGACCAA 99
************************************************************
consensus_10587#0 ATAATGTGTTACTGATAGCTTTGAGATAACTTCAAGCTCATAGATACATTTTGTAGCGGC 240
consensus_10587#1 ATAATGTGTTACTGATAGCTTTGAGATAACTTCAAGCTCATAGATACATTTTGTAGCGGC 159
************************************************************
consensus_10587#0 ATTTCTCTGAAACATGAATTTTACAACGGCATACGCCCAAATTTCCAACGAAAAACAGTG 300
consensus_10587#1 ATTTCTCTGAAACATGAATTTTACAACGGCATACGCCCAAATTTCCAACGAAAAACAGTG 219
************************************************************
consensus_10587#0 TCCATTTCGTTGTCCTGAATCCACTGCAATGGCATTCGAGCTCATGGAGCTCGCACGGCC 360
consensus_10587#1 TCCATTTCGTTGTCCTGAATCCACTGCAATGGCATTCGAGCTCATGGAGCTCGCACGGCC 279
************************************************************
consensus_10587#0 GCATTGTCATGACATACCTGTAGACAGAATTAGTGAAATGGATATGAATTCAGACCTGGA 420
consensus_10587#1 GCATTGTCATGACATACC------------------------------------------ 297
******************
consensus_10587#0 GCAGAATGACCGAAATGTTGAGAGTTTGGTGCAATAACAGAAAAGTTTCTCCTACCGCTG 480
consensus_10587#1 --------------------------------------------------------GCTG 301
****
consensus_10587#0 CTGATGCTGATGCCATGGACGATTAAACCCATAATATAAACTCTGCAAACTTCCACAGAA 540
consensus_10587#1 CTGATGCTGATGCCATGGACGATTAAACCCATAATATAAACTCTGCAAACTTCCACAGAA 361
************************************************************
consensus_10587#0 CAGCCTAGCAGCAGGAATGGAAGAGGCAAGCACAGGAGAGAGAGGCAAAAGTGAAGTCCA 600
consensus_10587#1 CAGCCTAGCAGCAGGAATGGAAGAGGCAAGCACAGGAGAGAGAGGCAAAAGTGAAGTCCA 421
************************************************************
consensus_10587#0 GCTTCAAACTGAATCTCCTGCTCCTCTGCATGCCCCTTCCACTGCTGCTGCTACAGCCAA 660
consensus_10587#1 GCTTCAAACTGAATCTCCTGCTCCTCTGCATGCCCCTTCCACTGCTGCTGCTACAGCCAA 481
************************************************************
consensus_10587#0 AAAACCAGACCTAACATAACACCTACCTATCCCAAACCAAATTTTGCTGTGGCTGCTGCT 720
consensus_10587#1 AAAACCAGACCTAACATAACACCTACCTATCCCAAACCAAATTTTGCTGTGGCT------ 535
******************************************************
consensus_10587#0 GATTTTCTACTCCTTCAGTCCA 742
consensus_10587#1 ----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||