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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10592#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1178 fasta sequence
[CTCTTCCTCCCGCCCCCGACCTCTCTTCCCTATCCACCCCATCCATGGCTGCCTCCTCCCACTACGCCCTCCTCCACCACCACCTCCCCAACCCTCTCCATCCCCGTCACCTCTCCTCCTCCTCCTCCCCTTCTCCTCCCCCTCCTCTCCACCTCCACCTCCACCTCCACCGCCACCGCCTCGCCCTCTCCACCGCCCGTTTCTTCCGCCTCGCGGAGCGGCGAGCCAGCGCGGGGCCACTGGTGTTCGAAACGGAGGAGGAGAGGAGTGGGTGGTCGGGTGCGGAGGCAGCGGAGTCGAACTACGACGATGAGGAGGATGAGGAGGAGGAGCAAGGGTGGGCGGGCGGCAATGCCGCGGGGTGGCGCGGGGAGAGCCACGAGGATGATCAGGAGGAGGGTTCCGGTTCCGGGGAGGGGCGGAGGCCGCGGCGGTCGCGGCCGCGCGAGCTGTTCGTATGCAATCTTCCCCGCCGCTGCGACGTCGACGACCTCTACGAGCTCTTCAAGCCCTACGGCACCGTCCTCTCCGTTGAGATTTCCCGTGACCCTGAGACTGGACTTAGCCGAGGATGTGGTTTCGTCACAATGCGTTCTCTCCCAGAAGCTCGGACAGCCATGAACGCTCTCGATGGATTTGACCTGGATGGGCGTGAAATGCTTGTAAAACTATCATCCGACGTTGTTTCTAAAAGGAGAAACATCAACATGACTCATACGCCACCTGTGAAAGACCACATCTTCGAGAGCCCACACAAGATCTACGTTGGCAACATCGCGTGGTCTGTTGAGCCACAAGAATTGCGAGAGTACTTCTCTCAGTGCGGAACCGTCGTCAGTACAAGGCTGCTGACAGATCGCAAAGGAGGGAGAGGCCGTGTCTATGGATTCCTCTCATTTGCTTCAGCTGAAGAGCTTGAGGCTGCATTGAAGCTTGACAATACGCATTTTCATGGACGGAACATCCTCGTCAGGCAAGCTCATGAAGAGCGTCAGGCACACTGAACCG-TCCAGGGATTATTGGAGACCTA-TTGCAATTTTGTCTAGCTTATTTGCTGATTGAGTTCGTCCTTGGGCGCAATGCTGCACATCAAGACTAACATGTGTTTTTTTTTTTTGGTATGTATTGAGTATTCTGTATTCTAGTGA-CTTGAGTACAATGCGAATGGGTACTAGCAA]
[+] EMBL AK099630 [CTCTTCCTCCCGCCCCCGACCTCTCTTCCCTATCCACCCCATCCATGGCTGCCTCCTCCCACTACGCCCTCCTCCACCACCACCTCCCCAACCCTCTCCATCCCCGTCACCTCTCCTCCTCCTCCTCCCCTTCTCCTCCCCCTCCTCTCCACCTCCACCTCCACCTCCACCGCCACCGCCTCGCCCTCTCCACCGCCCGTTTCTTCCGCCTCGCGGAGCGGCGAGCCAGCGCGGGGCCACTGGTGTTCGAAACGGAGGAGGAGAGGAGTGGGTGGTCGGGTGCGGAGGCAGCGGAGTCGAACTACGACGATGAGGAGGATGAGGAGGAGGAGCAAGGGTGGGCGGGCGGCAATGCCGCGGGGTGGCGCGGGGAGAGCCACGAGGATGATCAGGAGGAGGGTTCCGGTTCCGGGGAGGGGCGGAGGCCGCGGCGGTCGCGGCCGCGCGAGCTGTTCGTATGCAATCTTCCCCGCCGCTGCGACGTCGACGACCTCTACGAGCTCTTCAAGCCCTACGGCACCGTCCTCTCCGTTGAGATTTCCCGTGACCCTGAGACTGGACTTAGCCGAGGATGTGGTTTCGTCACAATGCGTTCTCTCCCAGAAGCTCGGACAGCCATGAACGCTCTCGATGGATTTGACCTGGATGGGCGTGAAATGCTTGTAAAACTATCATCCGACGTTGTTTCTAAAAGGAGAAACATCAACATGACTCATACGCCACCTGTGAAAGACCACATCTTCGAGAGCCCACACAAGATCTACGTTGGCAACATCGCGTGGTCTGTTGAGCCACAAGAATTGCGAGAGTACTTCTCTCAGTGCGGAACCGTCGTCAGTACAAGGCTGCTGACAGATCGCAAAGGAGGGAGAGGCCGTGTCTATGGATTCCTCTCATTTGCTTCAGCTGAAGAGCTTGAGGCTGCATTGAAGCTTGACAATACGCATTTTCATGGACGGAACATCCTCGTCAGGCAAGCTCATGAAGAGCGTCAGGCACACTGAACCG TCCAGGGATTATTGGAGACCTA TTGCAATTTTGTCTAGCTTATTTGCTGATTGAGTTCGTCCTTGGGCGCAATGCTGCACATCAAGACTAACATGTGTTTTTTTTTTTTGGTATGTATTGAGTATTCTGTATTCTAGTGA CTTGAGTACAATGCGAATGGGTACTAGCAA]
[+] EMBL CB964686 [ atagctgGGCTG GCGAGCTGTTCGTATGCAATCTTCCCCG CGCTGCGACGTCGACGACCTCTACGAGCTCTTCAAGCCCTACGGCACCGTCCTCTCCGTTGAGATTTCCCGTGACCCTGAGACTGGACTTAGCCGAGGATGTGGTTTCGTCACAATGCGTTCTCTCCCAGAAGCTCGGACAGCCATGAACGCTCTCGATGGATTTGACCTGGATGGGCGTGAAATGCTTGTAAAACTATCATCCGACGTTGTTTCTAAAAGGAGAAACATCAACATGACTCATACGCCACCTGTGAAAGACCACATCTTCGAGAGCCCACACAAGATCTACGTTGGCAACATCGCGTGGTCTGTTGAGCCACAAGAATTGCGAGAGTACTTCTCTCAGTGCGGAACCGTCGTCAGTACAAGGCTGCTGACAGATCGCAAAGGAGGGAGAGGCCGTGTCTATGGATTCCTCTCATTTGCTTCAGCTGAAGAGCTTGAGGCTGCATTGAAGCTTGACAATACGCATTTTCATGGACGGAACATCCTCGTCAGGCAAGCTCATGAAGAGCGTCAGGCACACTGAACCG TCCANGGATTATTGGAGACCTA TTGCAATTTTGTCTAGCTTATTTGCTGATTGAGTTCGTCCTTGGGCGCAATGCTGCACATCAAGACTAACATGTG TTTTTTTTATTGGTATGTATTGAGTATTCTGTATTCTAGTGACCTTGAGTACCATGCGAATGGGTACTA ]
[+] EMBL CB964782 [ TCGTATGCAATCTTCCCCGCCGCTGCGACGTCGACGACCTCTACGAGCTCTTCAAGCCCTACGGCACCGTCCTCTCCGTTGAGATTTCCCGTGACCCTGAGACTGGACTTAGCCGAGGATGTGGTTTCGTCACAATGCGTTCTCTCCCAGAAGCTCGGACAGCCATGAACGCTCTCGATGGATTTGACCTGGATGGGCGTGAAATGCTTGTAAAACTATCATCCGACGTTGTTTCTAAAAGGAGAAACATCAACATGACTCATACGCCACCTGTGAAAGACCACATCTTCGAGAGCCCACACAAGATCTACGTTGGCAACATCGCGTGGTCTGTTGAGCCACAAGAATTGCGAGAGTACTTCTCTCAGTGCGGAACCGTCGTCAGTACAAGGCTGCTGACAGATCGCAAAGGAGGGAGAGGCCGTGTCTATGGATTCCTCTCATTTGCTTCAGCTGAAGAGCTTGAGGCTGCATTGAAGCTTGACAATACGCATTTTCATGGACGGAACATCCTCGTCAGGCAAGCTCATGAAGAGCGTCAGGCACACTGAACCGNTCCA GGATTATTGGAGACCTATTTGCAA TTTGTCTAGCTTATTTGCTGATTGAGTTCGTCCTTGGGCGCAATGCTGCACATCAAGA ]
consensusID : consensus_10592#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 803 fasta sequence
[CACTAAAGGGAATAGCTTGGGCCTTGCGAGCTGTTCGTATGCAATCTTCCCCGCGCTGCGACGTCGACGACCTCTACGAGCTCTTCAAGCCCTACGGCACCGTCCTCTCCGTTGAGATTTCCCGTGACCCTGA-GACTGGACTTAGCCGAG-GATGTGGTTTC-GTCACAATGCGTTCTCTCCCAGAAGCTCGGACAGCCATGAACGCTCTCGATGGATTTGACCTGGATGGGCGTGAAATGCTTGTAAAACTATCATCCGACGTTGTTTCTAAAAGGAGAAACATCAACATGACTCATACGCCACCTGTGAAAGACCACATCTTCGAGAGCCCACACAAGATCTACGTTGGCAACATCGCGTGGTCTGTTGAGCCACAAGAATTGCGAGAGTACTTCTCTCAGTGCGGAACCGTCGTCAGTACAAGGCTGCTGACAGATCGCAAAGGAGGGAGAGGCCGTGTCTATGGATTCCTCTCATTTGCTTCAGCTGAAGAGCTTGAGGCTGCATTGAAGCTTGACAATACGCATTTTCATGGACGGAACATCCTCGTCAGGCAAGCTCATGAAGAGCGTCAGGCACACTGAACCGTCCAGGGATTATTGGAGACCTATTGGAATTTTGTCTAAGCTTATTTGCTGATTGAGTTCGTCCTTGGGGCGCAATGGTGCACATCAAGACTAACATGTGTTTCGTATTAAGGAATGTATTGAGTATCTGTATTCAGTGACTGAGTTAAGGGGAATGGGTCTAGCATCTTCCCTCGGGCGAATCTGGGCTCGAGGCCAAATCCTATAGGAGTCGAT]
[+] EMBL BU673826 [CACTAAAGGGAATAGCTTGGGCCTTGCGAGCTGTTCGTATGCAATCTTCCCCGCGCTGCGACGTCGACGACCTCTACGAGCTCTTCAAGCCCTACGGCACCGTCCTCTCCGTTGAGATTTCCCGTGACCCTGA GACTGGACTTAGCCGAG GATGTGGTTTC GTCACAATGCGTTCTCTCCCAGAAGCTCGGACAGCCATGAACGCTCTCGATGGATTTGACCTGGATGGGCGTGAAATGCTTGTAAAACTATCATCCGACGTTGTTTCTAAAAGGAGAAACATCAACATGACTCATACGCCACCTGTGAAAGACCACATCTTCGAGAGCCCACACAAGATCTACGTTGGCAACATCGCGTGGTCTGTTGAGCCACAAGAATTGCGAGAGTACTTCTCTCAGTGCGGAACCGTCGTCAGTACAAGGCTGCTGACAGATCGCAAAGGAGGGAGAGGCCGTGTCTATGGATTCCTCTCATTTGCTTCAGCTGAAGAGCTTGAGGCTGCATTGAAGCTTGACAATACGCATTTTCATGGACGGAACATCCTCGTCAGGCAAGCTCATGAAGAGCGTCAGGCACACTGAACCGTCCAGGGATTATTGGAGACCTATTGGAATTTTGTCTAAGCTTATTTGCTGATTGAGTTCGTCCTTGGGGCGCAATGGTGCACATCAAGACTAACATGTGTTTCGTATTAAGGAATGTATTGAGTATCTGTATTCAGTGACTGAGTTAAGGGGAATGGGTCTAGCATCTTCCCTCGGGCGAATCTGGGCTCGAGGCCAAATCCTATAGGAGTCGAT]
[+] EMBL CB964789 [ GGGAATAGC TGGGCC GGCGAGCTGTTCGTATGCAATCTTCCCCGCGCTGCGACGTCGACGACCTCTACGAGCTCTTCAAGCCCTACGGCACCGTCCTCTCCGTTGAGATTTCCCGTGACCCTGA GACTGGACTTAGCCGAG GATGTGGTTTC GTCACAATGCGTTCTCTCCCAGAAGCTCGGACAGCCATGAACGCTCTCGATGGATTTGACCTGGATGGGCGTGAAATGCTTGTAAAACTATCATCCGACGTTGTTTCTAAAAGGAGAAACATCAACATGACTCATACGCCACCTGTGAAAGACCACATCTTCGAGAGCCCACACAAGATCTACGTTGGCAACATCGCGTGGTCTGTTGAGCCACAAGAATTGCGAGAGTACTTCTCTCAGTGCGGAACCGTCGTCAGTACAAGGCTGCTGACAGATCGCAAAGGAGGGAGAGGCCGTGTCTATGGATTCCTCTCATTTGCTTCAGCTGAAGAGCTTGAGGCTGCATTGAAGCTTGACAATACGCATTTTCATGGACGGAACATCCTCGTCAGGCAAGCTCATGAAGAGCGTCAGGCACACTGAACCGTCCAGGGATTATTGGAGACCTATTGCAATTTTGTCT AGCTTATTTGCTGATTGAGTTCGTCCTT GGGCGCAATGGTGCACATCAAGACTAA ]
[+] EMBL CB965986 [ GCTGTTCGTATGCAATCTTCCCCGCGCTGCGACGTCGACGACCTCTACGAGCTCTTCAAGCCCTACGGCACCGTCCTCTCCGTTGAGATTTCCCGTGACCCTGACGACTGGACTTAGCCGAGTGATGTGGTTTCTGTCACAca ]
consensusID : consensus_10592#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 139 fasta sequence
[TTCGTATGCAATCTTCCCCGCCGCTGCGACGTCTGACGACCTCTACGATGCTCTTCAATGCCCTACGTGCACCTGTCCTCTCCTGTTGAGATTTCCCTGTGACCCTTGAGACTTGGACTTAGCCTGAGTGATGTTGTGT]
[+] EMBL CB965988 [TTCGTATGCAATCTTCCCCGCCGCTGCGACGTCTGACGACCTCTACGATGCTCTTCAATGCCCTACGTGCACCTGTCCTCTCCTGTTGAGATTTCCCTGTGACCCTTGAGACTTGGACTTAGCCTGAGTGATGTTGTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10592#0 CTCTTCCTCCCGCCCCCGACCTCTCTTCCCTATCCACCCCATCCATGGCTGCCTCCTCCC 60
consensus_10592#2 ------------------------------------------------------------
consensus_10592#1 ------------------------------------------------------------
consensus_10592#0 ACTACGCCCTCCTCCACCACCACCTCCCCAACCCTCTCCATCCCCGTCACCTCTCCTCCT 120
consensus_10592#2 ------------------------------------------------------------
consensus_10592#1 ------------------------------------------------------------
consensus_10592#0 CCTCCTCCCCTTCTCCTCCCCCTCCTCTCCACCTCCACCTCCACCTCCACCGCCACCGCC 180
consensus_10592#2 ------------------------------------------------------------
consensus_10592#1 ------------------------------------------------------------
consensus_10592#0 TCGCCCTCTCCACCGCCCGTTTCTTCCGCCTCGCGGAGCGGCGAGCCAGCGCGGGGCCAC 240
consensus_10592#2 ------------------------------------------------------------
consensus_10592#1 ------------------------------------------------------------
consensus_10592#0 TGGTGTTCGAAACGGAGGAGGAGAGGAGTGGGTGGTCGGGTGCGGAGGCAGCGGAGTCGA 300
consensus_10592#2 ------------------------------------------------------------
consensus_10592#1 ------------------------------------------------------------
consensus_10592#0 ACTACGACGATGAGGAGGATGAGGAGGAGGAGCAAGGGTGGGCGGGCGGCAATGCCGCGG 360
consensus_10592#2 ------------------------------------------------------------
consensus_10592#1 ------------------------------------------------------------
consensus_10592#0 GGTGGCGCGGGGAGAGCCACGAGGATGATCAGGAGGAGGGTTCCGGTTCCGGGGAGGGGC 420
consensus_10592#2 ------------------------------------------------------------
consensus_10592#1 -----------------------------------------------------------C 1
consensus_10592#0 GGAGGCCGCGGCGGTCGCGGCCGCGCGAGCTGTTCGTATGCAATCTTCCCCGCCGCTGCG 480
consensus_10592#2 --------------------------------TTCGTATGCAATCTTCCCCGCCGCTGCG 28
consensus_10592#1 ACTAAAGGGAATAGCTTGGGCCTTGCGAGCTGTTCGTATGCAATCTTCCCCGC-GCTGCG 60
********************* ******
consensus_10592#0 ACGTC-GACGACCTCTACGA-GCTCTTCAA-GCCCTACG-GCACC-GTCCTCTCC-GTTG 534
consensus_10592#2 ACGTCTGACGACCTCTACGATGCTCTTCAATGCCCTACGTGCACCTGTCCTCTCCTGTTG 88
consensus_10592#1 ACGTC-GACGACCTCTACGA-GCTCTTCAA-GCCCTACG-GCACC-GTCCTCTCC-GTTG 114
***** ************** ********* ******** ***** ********* ****
consensus_10592#0 AGATTTCCC-GTGACCCT-GAGACT-GGACTTAGCCGAGGATGTGGTTTCGTCACAATGC 591
consensus_10592#2 AGATTTCCCTGTGACCCTTGAGACTTGGACTTAGCCT-GAGTGATGTTGTGT-------- 139
consensus_10592#1 AGATTTCCC-GTGACCCT-GAGACT-GGACTTAGCCGAGGATGTGGTTTCGTCACAATGC 171
********* ******** ****** ********** * ** *** **
consensus_10592#0 GTTCTCTCCCAGAAGCTCGGACAGCCATGAACGCTCTCGATGGATTTGACCTGGATGGGC 651
consensus_10592#2 ------------------------------------------------------------
consensus_10592#1 GTTCTCTCCCAGAAGCTCGGACAGCCATGAACGCTCTCGATGGATTTGACCTGGATGGGC 231
consensus_10592#0 GTGAAATGCTTGTAAAACTATCATCCGACGTTGTTTCTAAAAGGAGAAACATCAACATGA 711
consensus_10592#2 ------------------------------------------------------------
consensus_10592#1 GTGAAATGCTTGTAAAACTATCATCCGACGTTGTTTCTAAAAGGAGAAACATCAACATGA 291
consensus_10592#0 CTCATACGCCACCTGTGAAAGACCACATCTTCGAGAGCCCACACAAGATCTACGTTGGCA 771
consensus_10592#2 ------------------------------------------------------------
consensus_10592#1 CTCATACGCCACCTGTGAAAGACCACATCTTCGAGAGCCCACACAAGATCTACGTTGGCA 351
consensus_10592#0 ACATCGCGTGGTCTGTTGAGCCACAAGAATTGCGAGAGTACTTCTCTCAGTGCGGAACCG 831
consensus_10592#2 ------------------------------------------------------------
consensus_10592#1 ACATCGCGTGGTCTGTTGAGCCACAAGAATTGCGAGAGTACTTCTCTCAGTGCGGAACCG 411
consensus_10592#0 TCGTCAGTACAAGGCTGCTGACAGATCGCAAAGGAGGGAGAGGCCGTGTCTATGGATTCC 891
consensus_10592#2 ------------------------------------------------------------
consensus_10592#1 TCGTCAGTACAAGGCTGCTGACAGATCGCAAAGGAGGGAGAGGCCGTGTCTATGGATTCC 471
consensus_10592#0 TCTCATTTGCTTCAGCTGAAGAGCTTGAGGCTGCATTGAAGCTTGACAATACGCATTTTC 951
consensus_10592#2 ------------------------------------------------------------
consensus_10592#1 TCTCATTTGCTTCAGCTGAAGAGCTTGAGGCTGCATTGAAGCTTGACAATACGCATTTTC 531
consensus_10592#0 ATGGACGGAACATCCTCGTCAGGCAAGCTCATGAAGAGCGTCAGGCACACTGAACCGTCC 1011
consensus_10592#2 ------------------------------------------------------------
consensus_10592#1 ATGGACGGAACATCCTCGTCAGGCAAGCTCATGAAGAGCGTCAGGCACACTGAACCGTCC 591
consensus_10592#0 AGGGATTATTGGAGACCTATTGCAATTTTGTCTA-GCTTATTTGCTGATTGAGTTCGTCC 1070
consensus_10592#2 ------------------------------------------------------------
consensus_10592#1 AGGGATTATTGGAGACCTATTGGAATTTTGTCTAAGCTTATTTGCTGATTGAGTTCGTCC 651
consensus_10592#0 TTGGG-CGCAATGCTGCACATCAAGACTAACATGTGTTTTTTTTTTTTGGTATGTATTGA 1129
consensus_10592#2 ------------------------------------------------------------
consensus_10592#1 TTGGGGCGCAATGGTGCACATCAAGACTAACATGTGTTTCGTATTAA-GGAATGTATTGA 710
consensus_10592#0 GTATTCTGTATTCTAGTGACTTGAGTACAATGCGAATGGGTACTAGCAA----------- 1178
consensus_10592#2 ------------------------------------------------------------
consensus_10592#1 GTAT-CTGTATTC-AGTGACTGAGTTAAGGGGAATGGGTCTAGCATCTTCCCTCGGGCGA 768
consensus_10592#0 -----------------------------------
consensus_10592#2 -----------------------------------
consensus_10592#1 ATCTGGGCTCGAGGCCAAATCCTATAGGAGTCGAT 803
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||