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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10594#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 901 fasta sequence
[AATTCGCCCTTGTAACGGCATGACAGTGTTTTTTTTTTTTTTTTTATAGATAGATATCCGCTTCACTTTATTTACCGCAAAAATACACCGTTGCATACATCACAATTCACATCGCATATGTTGCTGATGCTGATTGCTGCATACCCGTCTACTGATCGATCGATTGATAGATAATGTGTTAATCAGATGCCTAGTTTTATTTGTTTATGTAGTACTCCCTCCGTTTTAAAATATTTGACACCGGTGACTTTTTAGGACGTGTTTGACCATTCGTCTTATTCCAAAAATCTATGTAATTATTTTTTTTCATATTATTTGATTTATTGTTAAATATACTTTTATGTACATATATAGTTTTACATATTTCATAAATTTTTTTAATAAGATAAACGGTCAAACTTGTTATAAGAAGTCAACGGTGTCAAACATTTTGAAATGGAGAGAGTAATTAAGCTACGCAGGCCATGAGATTGATCGATCGAAATAACAAGTGAACATGCAGTAGCAGTAGCAGAGTAGTGTGGTCGATCGTCATGGTTTGGCAGCTGGAGGACCTCCATAGCATCCGTATGCAACGGTGCATCCCCGTCCCGGGCGTGTGTAAGGTTCGCCGGGAATCCTGGGCACCGGGTACCGTGGTGGATACAGCGCTCCGTTCCTACCAATTGCATCTGCTGCTCCTGCTCTCCCTGGAGCTGGAGGGGCGTCGCACTCGTCGATACTGCTGCATCCCACGCCGCCCATGGAGTAACTGCTGGCCTTGATGGAACGAGGACCTGGATATCCCAAGGACACACCTCTCCCTCCTTGAGCTGGGCGCAGGGCGCAGATGAGAGCCAGGAGAATCAGGAGCGCCTTCCAAATGGAGACAGCAGAAGAAGATCCCCGTTGCTTCCTCATC]
[+] EMBL CF294983 [AATTCGCCCTTGTAACGGCATGACAGTGTTTTTTTTTTTTTTTTTATAGATAGATATCCGCTTCACTTTATTTACCGCAAAAATACACCGTTGCATACATCACAATTCACATCGCATATGTTGCTGATGCTGATTGCTGCATACCCGTCTACTGATCGATCGATTGATAGATAATGTGTTAATCAGATGCCTAGTTTTATTTGTTTATGTAGTACTCCCTCCGTTTTAAAATATTTGACACCGGTGACTTTTTAGGACGTGTTTGACCATTCGTCTTATTCCAAAAATCTATGTAATTATTTTTTTTCATATTATTTGATTTATTGTTAAATATACTTTTATGTACATATATAGTTTTACATATTTCATAAATTTTTTTAATAAGATAAACGGTCAAACTTGTTATAAGAAGTCAACGGTGTCAAACATTTTGAAATGGAGAGAGTAATTAAGCTACGCAGGCCATGAGATTGATCGATCGAAATAACAAGTGAACATGCAGTAGCAGTAGCAGAGTAGTGTGGTCGATCGTCATGGTTTGGCAGCTGGAGGACCTCCATAGCATCCGTATGCAACGGTGCATCCCCGTCCCG ]
[-] EMBL CF294984 [ ATGGAGAGAGTAATTAAGCTACGCAGGCCATGAGATTGATCGATCGAAATAACAAGTGAACATGCAGTAGCAGTAGCAGAGTAGTGT GTCGATCGTCATGGTTTGGCAGCTGGAGGACCTCCATAGCATCCGTATGCAACGGTGCATCNCCGTCCCGGGCGTGTGTAAGGTTCGCCGGGAATCCTGGGCACCGGGTACCGTGGTGGATACAGCGCTCCGTTCCTACCAATTGCATCTGCTGCTCCTGCTCTCCCTGGAGCTGGAGGGGCGTCGCACTCGTCGATACTGCTGCATCCCACGCCGCCCATGGAGTAACTGCTGGCCTTGATGGAACGAGGACCTGGATATCCCAAGGACACACCTCTCCCTCCTTGAGCTGGGCGCAGGGCGCAGATGAGAGCCAGGAGAATCAGGAGCGCCTTCCAAATGGAGACAGCAGAAGAAGATCCCCGTTGCTTCCTCATC]
consensusID : consensus_10594#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 616 fasta sequence
[TTTTTTTTTTTTATACTAGATAGATATCTGCTTCACTTTATTTACCACAAAAATACACCATGCATACATCACAATTCACATCGC-ATATGCTGCTGATGCCGATTGATGCATACCCGTCTACTGATCGATCGATAGATCAGGGGTTAATTATTAGATGCATAGTTTTTATTTGTTTATGTGGTGAGCTACGCAGGCCATGAGATTGATCGATCGAAATAACAAGCGAGCATGCAGTAGCAGTAGCAGAGTAGTATGTCGATCGTCATGGTTTGGCAGCTGGAGGACCTCCATAGCATCCGTATGCAACGGTGCATCCCCGTCCCGGGCGTGTGTAAGGTTCGCCTCCCCGACCTGTGTACGGATCGCCTCTCCGGCCTATGTAAGGTTCTTCAGGAATCGCCGGGTACCGTGGATTCAGTGGTACGCCCCCACCAACTAATGCTGCTGCTGCCACTCTCCCTCCTTCTACTGAGACAGTTTCCAGGGTGCAGATGAGAGCCAGGACCAACAGGAGCACCTTGCAGAGGGACACAACAGCAGCAGAAGAAGAAGATGAACAAGGAGAGCGGCTTTGCTTCCTCATCATCACTGACTGAAATTTTAGCTCTTGGTTTGT]
[-] EMBL CA755965 [TTTTTTTTTTTTNTACTAGATAGATATCTGCTTCACTTTATTTACCACAAAAATACACCATGCATACATCACAATTCACATCGC ATATGCTGCTGATGCCGATTGATGCATACCCGTCTACTGATCGATCGATAGATCAGGGGTTAATTATTAGATGCATAGTTTTTATTTGTTTATGTGGTGAGCTACGCAGGCCATGAGATTGATCGATCGAAATAACAAGCGAGCATGCAGTAGCAGTAGCAGAGTAGTATGTCGATCGTCATGGTTTGGCAGCTGGAGGACCTCCATAGCATCCGTATGCAACGGTGCATCCCCGTCCCGGGCGTGTGTAAGGTTCGCCTCCCCGACCTGTGTACGGATCGCCTCTCCGGCCTATGTAAGGTTCTTCAGGAATCGCCGGGTACCGTGGATTCAGTGGTACGCCCCCACCAACTAATGCTGCTGCTGCCACTCTCCCTCCTTCTACTGAGACAGTTTCCAGGGTGCAGATGAGAGCCAGGACCAACAGGAGCACCTTGCAGAGGGACACAACAGCAGCAGAAGAAGAAGATGAACAAGGAGAGCGGCTTTGCTTCCTCATCATCACTGACTGAAATTTTAGCT ]
[-] EMBL CA999068 [TTTTTTTTGTATATACTAGATAGATATCTGCTTCACTTTATTTACCACAAAAATACACCATGCATACATCACAATTCACATCGC ATATGCTGCTGATGCCGATTGATGCATACCCGTCTACTGATCGATCGATAGATCAGGGGTTAATTATTAGATGCATAGTTTTTATTTGTTTATGTGGTGAGCTACGCAGGCCATGAGATTGATCGATCGAAATAACAAGTGAACATGCAGTAGCAGTAGCAGAGTAGTGTGTCGATCGTCATGGTTTGGCAGCTGGAGGACCTCCATAGCATCCGTATGCAACGGTGCATCCCCGTCCCGGGCGTGTGTAAGGTTCGCCTCCCCGACCTGTGTACGGATCGCCTCTCCGGCCTATGTAAGGTTTTTCAGGAATCGCCGGGTACCGTGGATTCAGTGGTACGCCCCCACCAACTAATGCTGCTGCTGCCTCTCTCCCTCCT ]
[-] EMBL OSY14825 [ TTTTTTTTTACTAGATAGATATCTGCTTCACTTTATTTACCACAAAAATACACCATGCATACATCACAATTCACATCGCTATA GCTGCTGATGCCGATTGATGCATACCCGTCTACTGATCGATCGATAGATCAGGGGTTAATTATTAGATGCATAGTTTTTATTTGTTTATGTGGTGAGCTACGCAGGCCATGAGATTGATCGATCGAAATAACAAGCGAGCATGCAGTAGCAGTAGCAGAGTAGTATGTCGATCGTCATGGTTTGGCAGCTGGAGGACCTCCATAGCATCCGTATGCAACGGTGCATCCCCGTCCCGGGCGTGTGTAAGGTTCGCCTCCCCGACCTGTGTACGGATCGCCTCTCCGGCCTATGTAAGGTTCTTCAGGAATCGCCGGGTACCGTGGATTCAGTGGTACGCCCCCACCAACTAATGCTGCTGCTGCCACTCTCCCTCCTTCTACTGAGACAGTTTCCAGGGTGCAGATGAGAGCCAGGACCAACAGGAGCACCTTGCAGAGGGACACAACAGCAGCAGAAGAAGAAGATGAACAAGGAGAGCGGCTTTGCTTCCTCATCATCACTGAC ]
[-] EMBL AK062449 [ atgtgtaTATACTAGATAGATATCTGCTTCACTTTATTTACCACAAAAATACACCATGCATACATCACAATTCACATCGC ATATGCTGCTGATGCCGATTGATGCATACCCGTCTACTGATCGATCGATAGATCAGGGGTTAATTATTAGATGCATAGTTTTTATTTGTTTATGTGGTGAGCTACGCAGGCCATGAGATTGATCGATCGAAATAACAAGCGAGCATGCAGTAGCAGTAGCAGAGTAGTATGTCGATCGTCATGGTTTGGCAGCTGGAGGACCTCCATAGCATCCGTATGCAACGGTGCATCCCCGTCCCGGGCGTGTGTAAGGTTCGCCTCCCCGACCTGTGTACGGATCGCCTCTCCGGCCTATGTAAGGTTCTTCAGGAATCGCCGGGTACCGTGGATTCAGTGGTACGCCCCCACCAACTAATGCTGCTGCTGCCACTCTCCCTCCTTCTACTGAGACAGTTTCCAGGGTGCAGATGAGAGCCAGGACCAACAGGAGCACCTTGCAGAGGGACACAACAGCAGCAGAAGAAGAAGATGAACAAGGAGAGCGGCTTTGCTTCCTCATCATCACTGACTGAAATTTTAGCTCTTGGTTTGT]
consensusID : consensus_10594#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 557 fasta sequence
[AGATAGATATCTGCTTCACTTTATTTACCCCCAAAAATACACCATGCATACATCACAATTCACATCGCATATGCTGCTGATGCCGATTGATGCATACCCGTCTACTGATCGATCGATAGATCAGGGGTTAATTATTAGATGCATAGTTTTTATTTGTTTATGTGGTGAGCTACGCAGGCCATGAGATTGATCGATCGAAATAACAAGTGAACATGCAGTAGCAGTAGCAGAGTAGTGTGTCGATCGTCATGGTTTGGCAGCTGGAGGACCTCCATAGCATCCGTATGCAACGGTGCATCCCCGTCCCGGGCGTGTGTAAGGTTCGCCGGGAATCCTGGGCACCGGGTACCGTGATGGATTCAGCGCTCCGTTCCTACCAATTGCATCTGCTGCTCCTGCTCTCCCTCCTTGTACCGAGGCAGTGTGCAGGGTGCAGATGAGGGCGAGGACCATCAGGAGCACCTTGCAAAGGTAGCTGCGTTGCGTCCTCATTACTATCTTATTATCTCTACCTTAATTCTTTTTCTGATCTCTCCCTCAAATATATTGCACCTCTT]
[-] EMBL BQ529575 [AGATAGATATCTGCTTCACTTTATTTACCCCCAAAAATACACCATGCATACATCACAATTCACATCGCATATGCTGCTGATGCCGATTGATGCATACCCGTCTACTGATCGATCGATAGATCAGGGGTTAATTATTAGATGCATAGTTTTTATTTGTTTATGTGGTGAGCTACGCAGGCCATGAGATTGATCGATCGAAATAACAAGTGAACATGCAGTAGCAGTAGCAGAGTAGTGTGTCGATCGTCATGGTTTGGCAGCTGGAGGACCTCCATAGCATCCGTATGCAACGGTGCATCCCCGTCCCGGGCGTGTGTAAGGTTCGCCGGGAATCCTGGGCACCGGGTACCGTGATGGATTCAGCGCTCCGTTCCTACCAATTGCATCTGCTGCTCCTGCTCTCCCTCCTTGTACCGAGGCAGTGTGCAGGGTGCAGATGAGGGCGAGGACCATCAGGAGCACCTTGCAAAGGTAGCTGCGTTGCGTCCTCATTACTATCTTATTATCTCTACCTTAATTCTTTTTCTGATCTCTCCCTCAAATATATTGCACCTCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10594#1 ------------------------------------------------------------
consensus_10594#2 ------------------------------------------------------------
consensus_10594#0 AATTCGCCCTTGTAACGGCATGACAGTGTTTTTTTTTTTTTTTTTATAGATAGATATCCG 60
consensus_10594#1 ------------------------------------------------------------
consensus_10594#2 ------------------------------------------------------------
consensus_10594#0 CTTCACTTTATTTACCGCAAAAATACACCGTTGCATACATCACAATTCACATCGCATATG 120
consensus_10594#1 ------------------------------------------------------------
consensus_10594#2 ------------------------------------------------------------
consensus_10594#0 TTGCTGATGCTGATTGCTGCATACCCGTCTACTGATCGATCGATTGATAGATAATGTGTT 180
consensus_10594#1 ------------------------------------------------------------
consensus_10594#2 ------------------------------------------------------------
consensus_10594#0 AATCAGATGCCTAGTTTTATTTGTTTATGTAGTACTCCCTCCGTTTTAAAATATTTGACA 240
consensus_10594#1 -------------------------TTTTTTTTTTTTATACTAGATAGATATCTGCTTCA 35
consensus_10594#2 ------------------------------------------AGATAGATATCTGCTTCA 18
consensus_10594#0 CCGGTGACTTTTTAGGACGTGTTTGACCATTCGTCTTATTCCAAAAATCTATGTAATTAT 300
* * * *** * **
consensus_10594#1 CTTTATTTACCAC-AAAAATACACCAT-GCATACATCACAATTCACATCGCATATGCTGC 93
consensus_10594#2 CTTTATTTACCCCCAAAAATACACCAT-GCATACATCACAATTCACATCGCATATGCTGC 77
consensus_10594#0 TTTTTTTCATATTATTTGATTTATTGTTAAATATACTTTTATGTACATATATAGTTTTAC 360
*** ** * ** * * *** * ** **** * * *
consensus_10594#1 TGATGCCG--ATTGATGCATACCCGTCTACTGATCGATCGATAGATCAGGGGTTAATTAT 151
consensus_10594#2 TGATGCCG--ATTGATGCATACCCGTCTACTGATCGATCGATAGATCAGGGGTTAATTAT 135
consensus_10594#0 ATATTTCATAAATTTTTTTAATAAGATAAACGGTCAAACTTGTTATAAGAAGTCAACGGT 420
** * * * * * * * * ** * * ** ** ** ** *
consensus_10594#1 TAGATGCATAGTTTTTATTTGTTTATGTGGT-GAGCTACGCAGGCCATGAGATTGATCGA 210
consensus_10594#2 TAGATGCATAGTTTTTATTTGTTTATGTGGT-GAGCTACGCAGGCCATGAGATTGATCGA 194
consensus_10594#0 --GTCAAACATTTTGAAATGGAGAGAGTAATTAAGCTACGCAGGCCATGAGATTGATCGA 478
* * * *** * * * ** * ***************************
consensus_10594#1 TCGAAATAACAAGCGAGCATGCAGTAGCAGTAGCAGAGTAGTATG-TCGATCGTCATGGT 269
consensus_10594#2 TCGAAATAACAAGTGAACATGCAGTAGCAGTAGCAGAGTAGTGTG-TCGATCGTCATGGT 253
consensus_10594#0 TCGAAATAACAAGTGAACATGCAGTAGCAGTAGCAGAGTAGTGTGGTCGATCGTCATGGT 538
************* ** ************************* ** **************
consensus_10594#1 TTGGCAGCTGGAGGACCTCCATAGCATCCGTATGCAACGGTGCATCCCCGTCCCGGGCGT 329
consensus_10594#2 TTGGCAGCTGGAGGACCTCCATAGCATCCGTATGCAACGGTGCATCCCCGTCCCGGGCGT 313
consensus_10594#0 TTGGCAGCTGGAGGACCTCCATAGCATCCGTATGCAACGGTGCATCCCCGTCCCGGGCGT 598
************************************************************
consensus_10594#1 GTGTAAGGTTCGCCTCCCCGACCTGTGTACGGATCGCCTCTCCGGCCTATGTAAGGTTCT 389
consensus_10594#2 GTGTAAGGTTCGCC--------------GGGAATC-----------CTGGGCA------- 341
consensus_10594#0 GTGTAAGGTTCGCC--------------GGGAATC-----------CTGGGCA------- 626
************** * *** ** * *
consensus_10594#1 TCAGGAATCGCCGGGTACCGTGGATTCAGTGGTACGCCCCCACCAACTAATGCTGCTGCT 449
consensus_10594#2 CCGGGTACCGTGA-------TGGATTCAGCGCTCCGTTCCTACCAATTGCATCTGCTGCT 394
consensus_10594#0 CCGGGTACCGTGG-------TGGATACAGCGCTCCGTTCCTACCAATTGCATCTGCTGCT 679
* ** * ** ***** *** * * ** ** ***** * ********
consensus_10594#1 GCCACTCTCCCTCCTTCTACTGAGACAGTTTCCAGGGTGCAGATGAGAGCCAGGACCAAC 509
consensus_10594#2 CCTGCTCTCCCTCCTTGTACCGAGGCAGTGTGCAGGGTGCAGATGAGGGCGAGGACCATC 454
consensus_10594#0 CCTGCTCTCCCT---GGAGCTGGAGGGGCGTCGCACTCGTCGAT-ACTGCTGCATCCCAC 735
* ******** * * * * * *** * ** ** *
consensus_10594#1 AGGAGCACCTTGCAGAGGGACACA-ACAGCAGCAGAAGAAGAAGATGAACAAGGAGAGCG 568
consensus_10594#2 AGGAGCACCTTGCAAAGGTAGCTGCGTTGCGTCCTCATTACTATCTTATTATCTCTACCT 514
consensus_10594#0 -GCCGC-CCATGGAGTAACTGCTG-GCCTTGATGGAACGAGGACCTGGATATCCCAAGGA 792
* ** ** ** * * * * * * *
consensus_10594#1 -GCTTTGCTTCCTCATCA-TCACTGACTGAAATTTTAGCTCTTGGTTTGT---------- 616
consensus_10594#2 TAATTCTTTTTCTGATCTCTCCCTCAAATATATTGCACCTCTT----------------- 557
consensus_10594#0 CACACCTCTCCCTCCTTGAGC-TGGGCGCAGGGCGCAGATGAGAGCCAGGAGAATCAGGA 851
* ** * * * * *
consensus_10594#1 --------------------------------------------------
consensus_10594#2 --------------------------------------------------
consensus_10594#0 GCGCCTTCCAAATGGAGACAGCAGAAGAAGATCCCCGTTGCTTCCTCATC 901
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||