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Oryza sativa
cluster # 10595 cluster # 10595       Sequences # 7       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10595#0 length = 699 sequences # 4  
consensus_10595#1 length = 619 sequences # 1  
consensus_10595#2 length = 479 sequences # 1  
consensus_10595#3 length = 273 sequences # 1  

consensusID : consensus_10595#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 699
fasta sequence
                              [TGCTGGCATTTGGAAACTTATGGGGCAGAAGAGCCCTTTGCACAATGGCGTCGACAAGTGCTGAGTGCATGGGCAAACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTGATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTGAACTCTCGGTGACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGTCGAATTGCCCTTTTTCCCTACTATCAGAGTTCATGAATCCATGGAACGGCTGAATTGACCAGGA-TTGAACAG--AA-CGTGC-TAGTGGTGATGG-CATTTGACA-AGGAAGTAGTATTGCATATCTTTTTCTGAGCA-AGATTTTTATTAGCTAGTTACCCATCTGCTTCTCATGATCTTTAGCACCCAAA-GGGCACTCATGATTACAATTTCAGTTGACA-AAGAACATGGCGTGCCAACGTATTTGATTAGCATATTATTACAATTTCATACCAGGTATAAAGTAACTACACTTTCCTGCATATGCCATGTTCTTTGTCAAATACCTGGTGCTTGCCTGTTATACGTTTTAGCACTATGTATACTAGTAATATGCCCGTGCTAAACGCTACGGTGCATTCCCTTGTCTTTAATAACTTTTAAAATTTCATGTTGGGAAAAAAATTTATATGATATGTTCAAAAAAAAAA]

[+] EMBL BQ908943             [TGCTGGCATTTGGAAACTTATGGGGCAGAAGAGCCCTTTGCACAATGGCGTCGACAAGTGCTGAGTGCATGGGCAAACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTGATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTGAACTCTCGGTGACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGTCGAATTGCCCTTTTTCCCTACTATCAGAGTTCATGAATCCATGGAACGGCTGAATTGACCAGGA TTGAACAG  AA CGTGC TAGTGGTGATGG CATTTGACA AGGAAGTAGTATTGCATATCTTTTTCTGAGCN AGATTTTTATTAGCTAGTTACCaaaaaa                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL OSS15506A            [                             AGAGCCCTTTGCACAATGGCGTCGACAAGTGCTGAGTGCATGGGCAAACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTGATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTAAACTCTCGGTGACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGTCGAATTGCCCTTTTTCCCTACTATCAGAGTTCATGAATCCATGGAACGGCTGAATTGA CAGGA TTGAACAG  AA CGTGC TAGTGGTGATGG CATTTGACA AGGAAGTAGTATTGCATATCTTTTTCTGAGCA AGATTTTTATTAGCTAGTTACCCATCTGCTTCTCATGATCTTTAGCACCCAAA GGGCACTCATGGTTACAATTTCAGTTGACA AAGGACATGGCGTGCCAA GTATTTGATTAGCATATTATTACAATTTCATACC                                                                                                                                                                                                    ]
[+] EMBL BI809140             [                                                                                                                                                                                                                                                                                              atttgGACAGGGATTTGCACCGGAAACCGTGCTTAGTGGTGATGGCCATTTGACACAGGAAGTAGTATTGCATATCTTTTTCTGAGCACAGATTTTTATTAGCTAGTTACCCATCTGCTTCTCATGATCTTTA CACCCAAAGGGGCACTCATGATTACAATTTCAGTTGACACAAGAACATGGCGT CCAACGTATTTGATTAGCATATTATTACCATTTCATACCAGGTATAAAGTAACTACACTTTCCTGCATATGCCATGTTCTTTGTCAAATACCTGGTGCTTGCCTGTTATACGTTTTAGCACTATGTATACTAGTAATATGCCCGTGCTAAACGCTACGGTGCATTCCCTTGTCTTTAATAACTTTTAAAATTTCATGTTGGGAAAAAAATTTATATGATATGTTCAAAAAAAAAA]
[+] EMBL AU101817             [                                                                                                                                                                                                                                                                                                       AGGA TTGAACAG  AA CGTGC TAGTGGTGATGG CATTTGACA AGGAAGTAGTATTGCATATCTTTTTCTGAGCA AGATTTTTATTAGCTAGTTACCCATCTGCTTCTCATGATCTTTAGCACCCAAA GGGCACTCATGATTACAATTTCAGTTGACA AAGAACATGGCGTGCCAACGTATTTGATTAGCATATTATTACAATTTCATACCAGGTATAAAGTAACTACACTTTCCTGCAaaa                                                                                                                                                                     ]


>consensus_10595#0 TGCTGGCATTTGGAAACTTATGGGGCAGAAGAGCCCTTTGCACAATGGCGTCGACAAGTG CTGAGTGCATGGGCAAACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAA CTCTGGTATAAATTGATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCA TGTGAACTCTCGGTGACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGTCGAAT TGCCCTTTTTCCCTACTATCAGAGTTCATGAATCCATGGAACGGCTGAATTGACCAGGAT TGAACAGAACGTGCTAGTGGTGATGGCATTTGACAAGGAAGTAGTATTGCATATCTTTTT CTGAGCAAGATTTTTATTAGCTAGTTACCCATCTGCTTCTCATGATCTTTAGCACCCAAA GGGCACTCATGATTACAATTTCAGTTGACAAAGAACATGGCGTGCCAACGTATTTGATTA GCATATTATTACAATTTCATACCAGGTATAAAGTAACTACACTTTCCTGCATATGCCATG TTCTTTGTCAAATACCTGGTGCTTGCCTGTTATACGTTTTAGCACTATGTATACTAGTAA TATGCCCGTGCTAAACGCTACGGTGCATTCCCTTGTCTTTAATAACTTTTAAAATTTCAT GTTGGGAAAAAAATTTATATGATATGTTCAAAAAAAAAA



consensusID : consensus_10595#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 619
fasta sequence
                              [TTAACCCAAACATAATTCGACAGTAGTACATAACATGATTCCAAAACCAAAAGTAGGGCATCACAATCTTCAGCGAACAAGCCTTTGCCGACCACGGTAACAATTCCTCCATAACAAGGGTTGCGAAGGTAACCAGGATCAGACAAACAATCCCTCAGTTCTCCAGCAAGGCGGCAAGCACTACCGCTCTGGACGTCTGATCCTTGCTCGGACCAAAATCGGCAATGCTGGCATTTGGAAACTTATGGGGCAGAAGAGCCCTTTGCACAATGGCGTCGACAAGTGCTGAGTGCATGGGCAAACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTGATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTAAACTCTCGGTGACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGTCGAATTGCCCTTTTTCCCTACTATCAGAGTTCATGAATCCATGGAACGGCTGAATTGACAGGATTGAACAGAACGTGCTAGTGGTGATGGCATTTGACANGGANNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]

[+] EMBL CA756578             [TTAACCCAAACATAATTCGACAGTAGTACATAACATGATTCCAAAACCAAAAGTAGGGCATCACAATCTTCAGCGAACAAGCCTTTGCCGACCACGGTAACAATTCCTCCATAACAAGGGTTGCGAAGGTAACCAGGATCAGACAAACAATCCCTCAGTTCTCCAGCAAGGCGGCAAGCACTACCGCTCTGGACGTCTGATCCTTGCTCGGACCAAAATCGGCAATGCTGGCATTTGGAAACTTATGGGGCAGAAGAGCCCTTTGCACAATGGCGTCGACAAGTGCTGAGTGCATGGGCAAACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTGATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTAAACTCTCGGTGACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGTCGAATTGCCCTTTTTCCCTACTATCAGAGTTCATGAATCCATGGAACGGCTGAATTGACAGGATTGAACAGAACGTGCTAGTGGTGATGGCATTTGACANGGANNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]


>consensus_10595#1 TTAACCCAAACATAATTCGACAGTAGTACATAACATGATTCCAAAACCAAAAGTAGGGCA TCACAATCTTCAGCGAACAAGCCTTTGCCGACCACGGTAACAATTCCTCCATAACAAGGG TTGCGAAGGTAACCAGGATCAGACAAACAATCCCTCAGTTCTCCAGCAAGGCGGCAAGCA CTACCGCTCTGGACGTCTGATCCTTGCTCGGACCAAAATCGGCAATGCTGGCATTTGGAA ACTTATGGGGCAGAAGAGCCCTTTGCACAATGGCGTCGACAAGTGCTGAGTGCATGGGCA AACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTG ATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTAAACTCTCGGTG ACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGTCGAATTGCCCTTTTTCCCTA CTATCAGAGTTCATGAATCCATGGAACGGCTGAATTGACAGGATTGAACAGAACGTGCTA GTGGTGATGGCATTTGACANGGANNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNN



consensusID : consensus_10595#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 479
fasta sequence
                              [TGGCGTCGACAAGTGCTGAGTGCATGGGCAAACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTGATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTGAACTCTCGGTGACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGTCGAATTGCCCTTTTTCCCTACTATCAGAGTTCATGAATCCATGGAACGGCTGAATTGACAGGATTGAACAGAACGTGCTAGTGGTGATGGCATTTGACAAGGAAGTAGTATTGCATATCTTTTTCTGNNNANNNTTTTTATTAGCTAGTTACCCATCTGCTTCTCATGATCTTTNNNNNNNNNNNNGCACTCATGATTANNNNTTCAGTTGNNNNNNNNCATGGCGTGNNNNCGNNNNNGNTTNNNATATTATTNNNNNTTCATACCAGGTNTNAAGTAACTACACTTT]

[+] EMBL CF196024             [TGGCGTCGACAAGTGCTGAGTGCATGGGCAAACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTGATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTGAACTCTCGGTGACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGTCGAATTGCCCTTTTTCCCTACTATCAGAGTTCATGAATCCATGGAACGGCTGAATTGACAGGATTGAACAGAACGTGCTAGTGGTGATGGCATTTGACAAGGAAGTAGTATTGCATATCTTTTTCTGNNNANNNTTTTTATTAGCTAGTTACCCATCTGCTTCTCATGATCTTTNNNNNNNNNNNNGCACTCATGATTANNNNTTCAGTTGNNNNNNNNCATGGCGTGNNNNCGNNNNNGNTTNNNATATTATTNNNNNTTCATACCAGGTNTNAAGTAACTACACTTT]


>consensus_10595#2 TGGCGTCGACAAGTGCTGAGTGCATGGGCAAACCTGACGATACCTCCAGTGGCGCTATCA CAACTTGATTGGCAACTCTGGTATAAATTGATTTGGGCCCTTTCTTGGGTACTACATTTT CCCACTGCCTTGCCATGTGAACTCTCGGTGACGACATGAGCGGTTCTGTTCATCTTCCAA CGTAATCAGTCGAATTGCCCTTTTTCCCTACTATCAGAGTTCATGAATCCATGGAACGGC TGAATTGACAGGATTGAACAGAACGTGCTAGTGGTGATGGCATTTGACAAGGAAGTAGTA TTGCATATCTTTTTCTGNNNANNNTTTTTATTAGCTAGTTACCCATCTGCTTCTCATGAT CTTTNNNNNNNNNNNNGCACTCATGATTANNNNTTCAGTTGNNNNNNNNCATGGCGTGNN NNCGNNNNNGNTTNNNATATTATTNNNNNTTCATACCAGGTNTNAAGTAACTACACTTT



consensusID : consensus_10595#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 273
fasta sequence
                              [TGGCGTCGANNNNTGCTGAGTGCATGGGCAAACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTGATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTGAACTCTCNNTGACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGNNNAATTGCCCTTTTTCCCTNNNNNCNNNGTTCATGAATCCATGGAACGGCTGAATTGACNNNATTGAACAGAACGNNCTNCNG]

[+] EMBL CF196025             [TGGCGTCGANNNNTGCTGAGTGCATGGGCAAACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTGATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTGAACTCTCNNTGACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGNNNAATTGCCCTTTTTCCCTNNNNNCNNNGTTCATGAATCCATGGAACGGCTGAATTGACNNNATTGAACAGAACGNNCTNCNG]


>consensus_10595#3 TGGCGTCGANNNNTGCTGAGTGCATGGGCAAACCTGACGATACCTCCAGTGGCGCTATCA CAACTTGATTGGCAACTCTGGTATAAATTGATTTGGGCCCTTTCTTGGGTACTACATTTT CCCACTGCCTTGCCATGTGAACTCTCNNTGACGACATGAGCGGTTCTGTTCATCTTCCAA CGTAATCAGNNNAATTGCCCTTTTTCCCTNNNNNCNNNGTTCATGAATCCATGGAACGGC TGAATTGACNNNATTGAACAGAACGNNCTNCNG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10595#1      TTAACCCAAACATAATTCGACAGTAGTACATAACATGATTCCAAAACCAAAAGTAGGGCA 60
consensus_10595#3      ------------------------------------------------------------
consensus_10595#0      ------------------------------------------------------------
consensus_10595#2      ------------------------------------------------------------
                                                                                   

consensus_10595#1      TCACAATCTTCAGCGAACAAGCCTTTGCCGACCACGGTAACAATTCCTCCATAACAAGGG 120
consensus_10595#3      ------------------------------------------------------------
consensus_10595#0      ------------------------------------------------------------
consensus_10595#2      ------------------------------------------------------------
                                                                                   

consensus_10595#1      TTGCGAAGGTAACCAGGATCAGACAAACAATCCCTCAGTTCTCCAGCAAGGCGGCAAGCA 180
consensus_10595#3      ------------------------------------------------------------
consensus_10595#0      ------------------------------------------------------------
consensus_10595#2      ------------------------------------------------------------
                                                                                   

consensus_10595#1      CTACCGCTCTGGACGTCTGATCCTTGCTCGGACCAAAATCGGCAATGCTGGCATTTGGAA 240
consensus_10595#3      ------------------------------------------------------------
consensus_10595#0      ---------------------------------------------TGCTGGCATTTGGAA 15
consensus_10595#2      ------------------------------------------------------------
                                                                                   

consensus_10595#1      ACTTATGGGGCAGAAGAGCCCTTTGCACAATGGCGTCGACAAGTGCTGAGTGCATGGGCA 300
consensus_10595#3      ------------------------------TGGCGTCGANNNNTGCTGAGTGCATGGGCA 30
consensus_10595#0      ACTTATGGGGCAGAAGAGCCCTTTGCACAATGGCGTCGACAAGTGCTGAGTGCATGGGCA 75
consensus_10595#2      ------------------------------TGGCGTCGACAAGTGCTGAGTGCATGGGCA 30
                                                     *********    *****************

consensus_10595#1      AACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTG 360
consensus_10595#3      AACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTG 90
consensus_10595#0      AACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTG 135
consensus_10595#2      AACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTG 90
                       ************************************************************

consensus_10595#1      ATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTAAACTCTCGGTG 420
consensus_10595#3      ATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTGAACTCTCNNTG 150
consensus_10595#0      ATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTGAACTCTCGGTG 195
consensus_10595#2      ATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTGAACTCTCGGTG 150
                       ************************************************ *******  **

consensus_10595#1      ACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGTCGAATTGCCCTTTTTCCCTA 480
consensus_10595#3      ACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGNNNAATTGCCCTTTTTCCCTN 210
consensus_10595#0      ACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGTCGAATTGCCCTTTTTCCCTA 255
consensus_10595#2      ACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGTCGAATTGCCCTTTTTCCCTA 210
                       ***************************************   ***************** 

consensus_10595#1      CTATCAGAGTTCATGAATCCATGGAACGGCTGAATTGAC-AGGATTGAACAGAACGTGCT 539
consensus_10595#3      NNNNCNNNGTTCATGAATCCATGGAACGGCTGAATTGAC-NNNATTGAACAGAACGNNCT 269
consensus_10595#0      CTATCAGAGTTCATGAATCCATGGAACGGCTGAATTGACCAGGATTGAACAGAACGTGCT 315
consensus_10595#2      CTATCAGAGTTCATGAATCCATGGAACGGCTGAATTGAC-AGGATTGAACAGAACGTGCT 269
                           *   *******************************    *************  **

consensus_10595#1      AGTGGTGATGGCATTTGACANGGANNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 599
consensus_10595#3      NCNG-------------------------------------------------------- 273
consensus_10595#0      AGTGGTGATGGCATTTGACAAGGAAGTAGTATTGCATATCTTTTTCTGAGCAAGATTTTT 375
consensus_10595#2      AGTGGTGATGGCATTTGACAAGGAAGTAGTATTGCATATCTTTTTCTGNNNANNNTTTTT 329
                          *                                                        

consensus_10595#1      NNNNNNNNNNNNNNNNNNNN---------------------------------------- 619
consensus_10595#3      ------------------------------------------------------------
consensus_10595#0      ATTAGCTAGTTACCCATCTGCTTCTCATGATCTTTAGCACCCAAAGGGCACTCATGATTA 435
consensus_10595#2      ATTAGCTAGTTACCCATCTGCTTCTCATGATCTTTNNNNNNNNNNNNGCACTCATGATTA 389
                                                                                   

consensus_10595#1      ------------------------------------------------------------
consensus_10595#3      ------------------------------------------------------------
consensus_10595#0      CAATTTCAGTTGACAAAGAACATGGCGTGCCAACGTATTTGATTAGCATATTATTACAAT 495
consensus_10595#2      NNNNTTCAGTTGNNNNNNNNCATGGCGTGNNNNCGNNNNNGNTTNNNATATTATTNNNNN 449
                                                                                   

consensus_10595#1      ------------------------------------------------------------
consensus_10595#3      ------------------------------------------------------------
consensus_10595#0      TTCATACCAGGTATAAAGTAACTACACTTTCCTGCATATGCCATGTTCTTTGTCAAATAC 555
consensus_10595#2      TTCATACCAGGTNTNAAGTAACTACACTTT------------------------------ 479
                                                                                   

consensus_10595#1      ------------------------------------------------------------
consensus_10595#3      ------------------------------------------------------------
consensus_10595#0      CTGGTGCTTGCCTGTTATACGTTTTAGCACTATGTATACTAGTAATATGCCCGTGCTAAA 615
consensus_10595#2      ------------------------------------------------------------
                                                                                   

consensus_10595#1      ------------------------------------------------------------
consensus_10595#3      ------------------------------------------------------------
consensus_10595#0      CGCTACGGTGCATTCCCTTGTCTTTAATAACTTTTAAAATTTCATGTTGGGAAAAAAATT 675
consensus_10595#2      ------------------------------------------------------------
                                                                                   

consensus_10595#1      ------------------------
consensus_10595#3      ------------------------
consensus_10595#0      TATATGATATGTTCAAAAAAAAAA 699
consensus_10595#2      ------------------------
                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)