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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10595#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 699 fasta sequence
[TGCTGGCATTTGGAAACTTATGGGGCAGAAGAGCCCTTTGCACAATGGCGTCGACAAGTGCTGAGTGCATGGGCAAACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTGATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTGAACTCTCGGTGACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGTCGAATTGCCCTTTTTCCCTACTATCAGAGTTCATGAATCCATGGAACGGCTGAATTGACCAGGA-TTGAACAG--AA-CGTGC-TAGTGGTGATGG-CATTTGACA-AGGAAGTAGTATTGCATATCTTTTTCTGAGCA-AGATTTTTATTAGCTAGTTACCCATCTGCTTCTCATGATCTTTAGCACCCAAA-GGGCACTCATGATTACAATTTCAGTTGACA-AAGAACATGGCGTGCCAACGTATTTGATTAGCATATTATTACAATTTCATACCAGGTATAAAGTAACTACACTTTCCTGCATATGCCATGTTCTTTGTCAAATACCTGGTGCTTGCCTGTTATACGTTTTAGCACTATGTATACTAGTAATATGCCCGTGCTAAACGCTACGGTGCATTCCCTTGTCTTTAATAACTTTTAAAATTTCATGTTGGGAAAAAAATTTATATGATATGTTCAAAAAAAAAA]
[+] EMBL BQ908943 [TGCTGGCATTTGGAAACTTATGGGGCAGAAGAGCCCTTTGCACAATGGCGTCGACAAGTGCTGAGTGCATGGGCAAACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTGATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTGAACTCTCGGTGACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGTCGAATTGCCCTTTTTCCCTACTATCAGAGTTCATGAATCCATGGAACGGCTGAATTGACCAGGA TTGAACAG AA CGTGC TAGTGGTGATGG CATTTGACA AGGAAGTAGTATTGCATATCTTTTTCTGAGCN AGATTTTTATTAGCTAGTTACCaaaaaa ]
[+] EMBL OSS15506A [ AGAGCCCTTTGCACAATGGCGTCGACAAGTGCTGAGTGCATGGGCAAACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTGATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTAAACTCTCGGTGACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGTCGAATTGCCCTTTTTCCCTACTATCAGAGTTCATGAATCCATGGAACGGCTGAATTGA CAGGA TTGAACAG AA CGTGC TAGTGGTGATGG CATTTGACA AGGAAGTAGTATTGCATATCTTTTTCTGAGCA AGATTTTTATTAGCTAGTTACCCATCTGCTTCTCATGATCTTTAGCACCCAAA GGGCACTCATGGTTACAATTTCAGTTGACA AAGGACATGGCGTGCCAA GTATTTGATTAGCATATTATTACAATTTCATACC ]
[+] EMBL BI809140 [ atttgGACAGGGATTTGCACCGGAAACCGTGCTTAGTGGTGATGGCCATTTGACACAGGAAGTAGTATTGCATATCTTTTTCTGAGCACAGATTTTTATTAGCTAGTTACCCATCTGCTTCTCATGATCTTTA CACCCAAAGGGGCACTCATGATTACAATTTCAGTTGACACAAGAACATGGCGT CCAACGTATTTGATTAGCATATTATTACCATTTCATACCAGGTATAAAGTAACTACACTTTCCTGCATATGCCATGTTCTTTGTCAAATACCTGGTGCTTGCCTGTTATACGTTTTAGCACTATGTATACTAGTAATATGCCCGTGCTAAACGCTACGGTGCATTCCCTTGTCTTTAATAACTTTTAAAATTTCATGTTGGGAAAAAAATTTATATGATATGTTCAAAAAAAAAA]
[+] EMBL AU101817 [ AGGA TTGAACAG AA CGTGC TAGTGGTGATGG CATTTGACA AGGAAGTAGTATTGCATATCTTTTTCTGAGCA AGATTTTTATTAGCTAGTTACCCATCTGCTTCTCATGATCTTTAGCACCCAAA GGGCACTCATGATTACAATTTCAGTTGACA AAGAACATGGCGTGCCAACGTATTTGATTAGCATATTATTACAATTTCATACCAGGTATAAAGTAACTACACTTTCCTGCAaaa ]
consensusID : consensus_10595#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence
[TTAACCCAAACATAATTCGACAGTAGTACATAACATGATTCCAAAACCAAAAGTAGGGCATCACAATCTTCAGCGAACAAGCCTTTGCCGACCACGGTAACAATTCCTCCATAACAAGGGTTGCGAAGGTAACCAGGATCAGACAAACAATCCCTCAGTTCTCCAGCAAGGCGGCAAGCACTACCGCTCTGGACGTCTGATCCTTGCTCGGACCAAAATCGGCAATGCTGGCATTTGGAAACTTATGGGGCAGAAGAGCCCTTTGCACAATGGCGTCGACAAGTGCTGAGTGCATGGGCAAACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTGATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTAAACTCTCGGTGACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGTCGAATTGCCCTTTTTCCCTACTATCAGAGTTCATGAATCCATGGAACGGCTGAATTGACAGGATTGAACAGAACGTGCTAGTGGTGATGGCATTTGACANGGANNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]
[+] EMBL CA756578 [TTAACCCAAACATAATTCGACAGTAGTACATAACATGATTCCAAAACCAAAAGTAGGGCATCACAATCTTCAGCGAACAAGCCTTTGCCGACCACGGTAACAATTCCTCCATAACAAGGGTTGCGAAGGTAACCAGGATCAGACAAACAATCCCTCAGTTCTCCAGCAAGGCGGCAAGCACTACCGCTCTGGACGTCTGATCCTTGCTCGGACCAAAATCGGCAATGCTGGCATTTGGAAACTTATGGGGCAGAAGAGCCCTTTGCACAATGGCGTCGACAAGTGCTGAGTGCATGGGCAAACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTGATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTAAACTCTCGGTGACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGTCGAATTGCCCTTTTTCCCTACTATCAGAGTTCATGAATCCATGGAACGGCTGAATTGACAGGATTGAACAGAACGTGCTAGTGGTGATGGCATTTGACANGGANNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]
consensusID : consensus_10595#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 479 fasta sequence
[TGGCGTCGACAAGTGCTGAGTGCATGGGCAAACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTGATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTGAACTCTCGGTGACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGTCGAATTGCCCTTTTTCCCTACTATCAGAGTTCATGAATCCATGGAACGGCTGAATTGACAGGATTGAACAGAACGTGCTAGTGGTGATGGCATTTGACAAGGAAGTAGTATTGCATATCTTTTTCTGNNNANNNTTTTTATTAGCTAGTTACCCATCTGCTTCTCATGATCTTTNNNNNNNNNNNNGCACTCATGATTANNNNTTCAGTTGNNNNNNNNCATGGCGTGNNNNCGNNNNNGNTTNNNATATTATTNNNNNTTCATACCAGGTNTNAAGTAACTACACTTT]
[+] EMBL CF196024 [TGGCGTCGACAAGTGCTGAGTGCATGGGCAAACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTGATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTGAACTCTCGGTGACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGTCGAATTGCCCTTTTTCCCTACTATCAGAGTTCATGAATCCATGGAACGGCTGAATTGACAGGATTGAACAGAACGTGCTAGTGGTGATGGCATTTGACAAGGAAGTAGTATTGCATATCTTTTTCTGNNNANNNTTTTTATTAGCTAGTTACCCATCTGCTTCTCATGATCTTTNNNNNNNNNNNNGCACTCATGATTANNNNTTCAGTTGNNNNNNNNCATGGCGTGNNNNCGNNNNNGNTTNNNATATTATTNNNNNTTCATACCAGGTNTNAAGTAACTACACTTT]
consensusID : consensus_10595#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence
[TGGCGTCGANNNNTGCTGAGTGCATGGGCAAACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTGATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTGAACTCTCNNTGACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGNNNAATTGCCCTTTTTCCCTNNNNNCNNNGTTCATGAATCCATGGAACGGCTGAATTGACNNNATTGAACAGAACGNNCTNCNG]
[+] EMBL CF196025 [TGGCGTCGANNNNTGCTGAGTGCATGGGCAAACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTGATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTGAACTCTCNNTGACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGNNNAATTGCCCTTTTTCCCTNNNNNCNNNGTTCATGAATCCATGGAACGGCTGAATTGACNNNATTGAACAGAACGNNCTNCNG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10595#1 TTAACCCAAACATAATTCGACAGTAGTACATAACATGATTCCAAAACCAAAAGTAGGGCA 60
consensus_10595#3 ------------------------------------------------------------
consensus_10595#0 ------------------------------------------------------------
consensus_10595#2 ------------------------------------------------------------
consensus_10595#1 TCACAATCTTCAGCGAACAAGCCTTTGCCGACCACGGTAACAATTCCTCCATAACAAGGG 120
consensus_10595#3 ------------------------------------------------------------
consensus_10595#0 ------------------------------------------------------------
consensus_10595#2 ------------------------------------------------------------
consensus_10595#1 TTGCGAAGGTAACCAGGATCAGACAAACAATCCCTCAGTTCTCCAGCAAGGCGGCAAGCA 180
consensus_10595#3 ------------------------------------------------------------
consensus_10595#0 ------------------------------------------------------------
consensus_10595#2 ------------------------------------------------------------
consensus_10595#1 CTACCGCTCTGGACGTCTGATCCTTGCTCGGACCAAAATCGGCAATGCTGGCATTTGGAA 240
consensus_10595#3 ------------------------------------------------------------
consensus_10595#0 ---------------------------------------------TGCTGGCATTTGGAA 15
consensus_10595#2 ------------------------------------------------------------
consensus_10595#1 ACTTATGGGGCAGAAGAGCCCTTTGCACAATGGCGTCGACAAGTGCTGAGTGCATGGGCA 300
consensus_10595#3 ------------------------------TGGCGTCGANNNNTGCTGAGTGCATGGGCA 30
consensus_10595#0 ACTTATGGGGCAGAAGAGCCCTTTGCACAATGGCGTCGACAAGTGCTGAGTGCATGGGCA 75
consensus_10595#2 ------------------------------TGGCGTCGACAAGTGCTGAGTGCATGGGCA 30
********* *****************
consensus_10595#1 AACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTG 360
consensus_10595#3 AACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTG 90
consensus_10595#0 AACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTG 135
consensus_10595#2 AACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTG 90
************************************************************
consensus_10595#1 ATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTAAACTCTCGGTG 420
consensus_10595#3 ATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTGAACTCTCNNTG 150
consensus_10595#0 ATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTGAACTCTCGGTG 195
consensus_10595#2 ATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTGAACTCTCGGTG 150
************************************************ ******* **
consensus_10595#1 ACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGTCGAATTGCCCTTTTTCCCTA 480
consensus_10595#3 ACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGNNNAATTGCCCTTTTTCCCTN 210
consensus_10595#0 ACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGTCGAATTGCCCTTTTTCCCTA 255
consensus_10595#2 ACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGTCGAATTGCCCTTTTTCCCTA 210
*************************************** *****************
consensus_10595#1 CTATCAGAGTTCATGAATCCATGGAACGGCTGAATTGAC-AGGATTGAACAGAACGTGCT 539
consensus_10595#3 NNNNCNNNGTTCATGAATCCATGGAACGGCTGAATTGAC-NNNATTGAACAGAACGNNCT 269
consensus_10595#0 CTATCAGAGTTCATGAATCCATGGAACGGCTGAATTGACCAGGATTGAACAGAACGTGCT 315
consensus_10595#2 CTATCAGAGTTCATGAATCCATGGAACGGCTGAATTGAC-AGGATTGAACAGAACGTGCT 269
* ******************************* ************* **
consensus_10595#1 AGTGGTGATGGCATTTGACANGGANNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 599
consensus_10595#3 NCNG-------------------------------------------------------- 273
consensus_10595#0 AGTGGTGATGGCATTTGACAAGGAAGTAGTATTGCATATCTTTTTCTGAGCAAGATTTTT 375
consensus_10595#2 AGTGGTGATGGCATTTGACAAGGAAGTAGTATTGCATATCTTTTTCTGNNNANNNTTTTT 329
*
consensus_10595#1 NNNNNNNNNNNNNNNNNNNN---------------------------------------- 619
consensus_10595#3 ------------------------------------------------------------
consensus_10595#0 ATTAGCTAGTTACCCATCTGCTTCTCATGATCTTTAGCACCCAAAGGGCACTCATGATTA 435
consensus_10595#2 ATTAGCTAGTTACCCATCTGCTTCTCATGATCTTTNNNNNNNNNNNNGCACTCATGATTA 389
consensus_10595#1 ------------------------------------------------------------
consensus_10595#3 ------------------------------------------------------------
consensus_10595#0 CAATTTCAGTTGACAAAGAACATGGCGTGCCAACGTATTTGATTAGCATATTATTACAAT 495
consensus_10595#2 NNNNTTCAGTTGNNNNNNNNCATGGCGTGNNNNCGNNNNNGNTTNNNATATTATTNNNNN 449
consensus_10595#1 ------------------------------------------------------------
consensus_10595#3 ------------------------------------------------------------
consensus_10595#0 TTCATACCAGGTATAAAGTAACTACACTTTCCTGCATATGCCATGTTCTTTGTCAAATAC 555
consensus_10595#2 TTCATACCAGGTNTNAAGTAACTACACTTT------------------------------ 479
consensus_10595#1 ------------------------------------------------------------
consensus_10595#3 ------------------------------------------------------------
consensus_10595#0 CTGGTGCTTGCCTGTTATACGTTTTAGCACTATGTATACTAGTAATATGCCCGTGCTAAA 615
consensus_10595#2 ------------------------------------------------------------
consensus_10595#1 ------------------------------------------------------------
consensus_10595#3 ------------------------------------------------------------
consensus_10595#0 CGCTACGGTGCATTCCCTTGTCTTTAATAACTTTTAAAATTTCATGTTGGGAAAAAAATT 675
consensus_10595#2 ------------------------------------------------------------
consensus_10595#1 ------------------------
consensus_10595#3 ------------------------
consensus_10595#0 TATATGATATGTTCAAAAAAAAAA 699
consensus_10595#2 ------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||