These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10596#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 622 fasta sequence [TTCGGCACGAGCTAGGGTTTTATTACTCCGCTCTGCCCGCCTCCTCCGCTTCGCACACCCCGCCGCGCCGGAGAATCGTCGTTGCTGGAGAGCGCTCTTCAACAACCGGTCGCCGACGAAGGCTTGGGAATCAAGAAGGTGGGAAGCCGGCATGGACTCCTTCTCGTCGTCGTCCGGGTCGCCCCCCAATACGGAGGCGCTCATGGACCAGATCAAGGCGCAGCTCGCTCAGGCCTACGCCCAGGAGTTCCTTGAGACTGTTGGAAACAAGTGCTTTGCCAANTGCGTGACAAAGCCAGGATCAAGCTTGAGCGGGAGCGAGAGCAGTTGCATATCACGCTGTGTTGATCGTTACATTGAGGCAACTGGTATTGTCAGCCGANCTCTGTTCANTTCCACACGCTGANCGACGATGTTTACCTTCAATTGCTGCTTAAATCANAATTGGGGAAAAATGTTTTTCCTAAANTCNTTATTTTTGCCTTTCTTATCTGTNANAAANAAAACCACCCTTATTTTTATTTANTTGGCACTATTTNCTTAAAAAAAAAAAGGGGGGGNCGGTACCCATTCCCCCNATANTGAGTCCTATTANATTCCCTGGGGCGTCCTTTTTCAACGT] [+] EMBL AA752905 [TTCGGCACGAGCTAGGGTTTTATTACTCCGCTCTGCCCGCCTCCTCCGCTTCGCACACCCCGCCGCGCCGGAGAATCGTCGTTGCTGGAGAGCGCTCTTCAACAACCGGTCGCCGACGAAGGCTTGGGAATCAAGAAGGTGGGAAGCCGGCATGGACTCCTTCTCGTCGTCGTCCGGGTCGCCCCCCAATACGGAGGCGCTCATGGACCAGATCAAGGCGCAGCTCGCTCAGGCCTACGCCCAGGAGTTCCTTGAGACTGTTGGAAACAAGTGCTTTGCCAANTGCGTGACAAAGCCAGGATCAAGCTTGAGCGGGAGCGAGAGCAGTTGCATATCACGCTGTGTTGATCGTTACATTGAGGCAACTGGTATTGTCAGCCGANCTCTGTTCANTTCCACACGCTGANCGACGATGTTTACCTTCAATTGCTGCTTAAATCANAATTGGGGAAAAATGTTTTTCCTAAANTCNTTATTTTTGCCTTTCTTATCTGTNANAAANAAAACCACCCTTATTTTTATTTANTTGGCACTATTTNCTTAAAAAAAAAAAGGGGGGGNCGGTACCCATTCCCCCNATANTGAGTCCTATTANATTCCCTGGGGCGTCCTTTTTCAACGT] [+] EMBL AF150080 [TTCGGCACGAGCTAGGGTTTTATTACTCCGCTCTGCCCGCCTCCTCCGCTTCGCACACCCCGCCGCGCCGGAGAATCGTCGTTGCTGGAGAGCGCTCTTCAACAACCGGTCGCCGACGAAGGCTTGGGAATCAAGAAGGTGGGAAGCCGGCATGGACTCCTTCTCGTCGTCGTCCGGGTCGCCCCCCAATACGGAGGCGCTCATGGACCAGATCAAGGCGCAGCTCGCTCAGGCCTACGCCCAGGAGTTCCTTGAGACTGTTGGAAACAAGTGCTTTGCCAANTGCGTGACAAAGCCAGGATCAAGCTTGAGCGGGAGCGAGAGCAGTTGCATATCACGCTGTGTTGATCGTTACATTGAGGCAACTGGTATTGTCAGCCGANCTCTGTTCANTTCCACACGCTGANCGACGATGTTTACCTTCAATTGCTGCTTAAATCANAATTGGGGAAAAATGTTTTTCCTAAANTCNTTATTTTTGCCTTTCTTATCTGTNANAAANAAAACCACCCTTATTTTTATTTANTTGGCACTATTTNCTTAAAAAAAAAAAGGGGGGGNCGGTACCCATTCCCCCNATANTGAGTCCTATTANATTCCCTGGGGCGTCCTTTTTCAACGT] consensusID : consensus_10596#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 551 fasta sequence [GCTCTGCCCGCCTCCTCCGCTTCGCACACCCCGCCGCGCCGGAGAATCGTCGTTGCTGGAGAGCGCTCTTCAACAACCGGTCGCCGACGAGGGCTTGGGAATCAAGAAGGTGGGAAGCCGGCATGGACTCCTTCTCGTCGTCGTCCGGGTCGCCCCCCAATACGGAGGCGCTCATGGACCAGATCAAGGCGCAGCTCGCTCAGGCCTACGCCCAGGAGTTCCTTGAGACTGTTGGAAACAAGTGCTTTGCCAAGTGCGTGACAAAGCCAGGATCAAGCTTGAGCGGGAGCGAGAGCAGTTGCATATCACGCTGTGTTGATCGTTACATTGAGGCAACTGGTATTGTCAGCCGAGCTCTGTTCAGTTCCACACGCTGAGCGACGATGTGTAGCCTTCAGTTGCTGCTTAAATCAGAATTGGGGAAAAATGTTTTTCCTAGACTCGTTATTTTTGCCTTTCTAATCTGTGAGAAAGAGAGCAACCTTTATATTAATTAAGTGGCAACTATTAGCTAAGC-TGGTTTTCAGCTGTTAAAAGCCGCANAAAAAAAA] [+] EMBL CF315331 [GCTCTGCCCGCCTCCTCCGCTTCGCACACCCCGCCGCGCCGGAGAATCGTCGTTGCTGGAGAGCGCTCTTCAACAACCGGTCGCCGACGAGGGCTTGGGAATCAAGAAGGTGGGAAGCCGGCATGGACTCCTTCTCGTCGTCGTCCGGGTCGCCCCCCAATACGGAGGCGCTCATGGACCAGATCAAGGCGCAGCTCGCTCAGGCCTACGCCCAGGAGTTCCTTGAGACTGTTGGAAACAAGTGCTTTGCCAAGTGCGTGACAAAGCCAGGATCAAGCTTGAGCGGGAGCGAGAGCAGTTGCATATCACGCTGTGTTGATCGTTACATTGAGGCAACTGGTATTGTCAGCCGAGCTCTGTTCAGTTCCACACGCTGAGCGACGATGTGTAGCCTTCAGTTGCTGCTTAAATCAGAATTGGGGAAAAATGTTTTTCCTAGACTCGTTATTTTTGCCTTTCTAATCTGTGAGAAAGAGAGCAACCTTTATATTAATTAAGTGGCAACTATTAGCTAAGC TGGTTTTCAGCTGTTAAAAGCCGCANAAAAAAA ] [-] EMBL CF315332 [ GTCGCCGAAGAGGGCTTGGGAATCAAGAAGGTGGGAAGCCGGCATGGACTCCTTCTCGTCGTCGTCCGGGTCGCCCCCCAATACGGAGGCGCTCATGGACCAGATCAAGGCGCAGCTCGTTCAGGCCTACGCCCAGGAGTTCCTTGAGACTGTTGGAAACAAGTGCTTTGCCAAGTGCGTGACAAAGCCAGGATCAAGCTTGAGCGGGAGCGAGAGCAGTTGCATATCACGCTGTGTTGATCGTTACATTGAGGCAACTGGTATTGTCAGCCGAGCTCTGTTCAGTTCCACACGCTGAGCGACGATGTGTAGCCTTCAGTTGCTGCTTAAATCAGAATTGGGGAAAAATGTTTTTCCTAGACTCGTTATTTTTGCCTTTCTAATCTGTGAGAAAGAGAGCACCCTTTATATTAATTAAGTGGCAACTATTAGCTAAGCGTGGTTTTCAGCTGTTAAAAGCCGCAAAAAAAAAA] consensusID : consensus_10596#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 523 fasta sequence [GCCGCGCCGGAGAATCGTCGTTGCTGGAGAGCGCTCTTCAACAACCGGTCGCCGACGAAGGCTTGGGAATCAAGAAGGTGGGAAGCCGGCATGGACTCCTTCTCGTCGTCGTCCGGGTCGCCCCCCAATACGGAGGCGCTCATGGACCAGATCAAGGCGCAGCTCGCTCAGGCCTACGCCCAGGAGTTCCTTGAGACTGTTGGAAACAAGTGCTTTGCCAAGTGCGTGACAAAGCCAGGATCAAGCTTGAGCGGGAGCGAGAGCAGTTGCATATCACGCTGTGTTGATCGTTACATTGAGGCAACTGGTATTGTCAGCCGAGCTCTGTTCAGTTCCACACGCTGAGCGACGATGTGTAGCCTTCAGTTGCTGCTTAAATCAGAATTGGGGAAAAATGTTTTTCCTAGACTCGTTATTTTTGCCTTTCTAATCTGTGAGAAAGAGAGCAACCTTTATATTAATTAAGTGGCAACTATTAGCTAAGCTGGTTTTCAGCTGTTAAAAGCCGCAAATTCTGCCTTGC] [+] EMBL AK108470 [GCCGCGCCGGAGAATCGTCGTTGCTGGAGAGCGCTCTTCAACAACCGGTCGCCGACGAAGGCTTGGGAATCAAGAAGGTGGGAAGCCGGCATGGACTCCTTCTCGTCGTCGTCCGGGTCGCCCCCCAATACGGAGGCGCTCATGGACCAGATCAAGGCGCAGCTCGCTCAGGCCTACGCCCAGGAGTTCCTTGAGACTGTTGGAAACAAGTGCTTTGCCAAGTGCGTGACAAAGCCAGGATCAAGCTTGAGCGGGAGCGAGAGCAGTTGCATATCACGCTGTGTTGATCGTTACATTGAGGCAACTGGTATTGTCAGCCGAGCTCTGTTCAGTTCCACACGCTGAGCGACGATGTGTAGCCTTCAGTTGCTGCTTAAATCAGAATTGGGGAAAAATGTTTTTCCTAGACTCGTTATTTTTGCCTTTCTAATCTGTGAGAAAGAGAGCAACCTTTATATTAATTAAGTGGCAACTATTAGCTAAGCTGGTTTTCAGCTGTTAAAAGCCGCAAATTCTGCCTTGC] consensusID : consensus_10596#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence [TCGTCGTTGCTGGAGAGCGCTCTTCAACAACCGGTCGCCGACGAAGGCTTGGGAATCAAGAAGGTGGGAAGCCGGCATGGACTCCTTCTCGTCGTCGTCCGGGTCGCCCCCCAATACGGAGGCGCTCATGGACCAGATCAAGGCGCAGCTCGCTCAGGCCTACGCCCAGGAGTTCCTTGAGACTGTTGGAAACAAGTGCTTTGCCAAGTGCGTGACAAAGCCAGGATCAAGCTTGAGCGGGAGCGAGAGCAGTTGCATATCACGCTGTGTTGATCGTTACATTGAGGCAACTGGTATTGTCAGCCGAGCTCTGTTCAGTTCCACACGCTGAGCGACGATGTGTAGCCTTCAGTTGCTGCTTAAATCAGAATTGGGGAAAAATGTTTTTCCTAGACTCGTTATTTTTGCCTTTCTAATCTGTGAGAAAGAGAGCAACCTTTATATTAATTAAGTGGCAACTATTAGCTAAGCTGGTTTTCAGCTGTNTANNNNNNNNNNNNNN] [+] EMBL CA754223 [TCGTCGTTGCTGGAGAGCGCTCTTCAACAACCGGTCGCCGACGAAGGCTTGGGAATCAAGAAGGTGGGAAGCCGGCATGGACTCCTTCTCGTCGTCGTCCGGGTCGCCCCCCAATACGGAGGCGCTCATGGACCAGATCAAGGCGCAGCTCGCTCAGGCCTACGCCCAGGAGTTCCTTGAGACTGTTGGAAACAAGTGCTTTGCCAAGTGCGTGACAAAGCCAGGATCAAGCTTGAGCGGGAGCGAGAGCAGTTGCATATCACGCTGTGTTGATCGTTACATTGAGGCAACTGGTATTGTCAGCCGAGCTCTGTTCAGTTCCACACGCTGAGCGACGATGTGTAGCCTTCAGTTGCTGCTTAAATCAGAATTGGGGAAAAATGTTTTTCCTAGACTCGTTATTTTTGCCTTTCTAATCTGTGAGAAAGAGAGCAACCTTTATATTAATTAAGTGGCAACTATTAGCTAAGCTGGTTTTCAGCTGTNTANNNNNNNNNNNNNN] consensusID : consensus_10596#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 193 fasta sequence [AGACTGTTGGAAACAAGTGCTTTGCCAAGTGCGTGACAAAGCCAGGATCAAGGTTGAGCGTGCGGGANAGTTGCATATCACGCTGTGTTGATCGTTACATTGAGGCAACTGGTATTTTCAGCCGAGCTCTGTTCAGTTCCACACACCTGAGCGCGTCGATGGTGTAGCCTTCAGTTCCTCTTAAATCAGAATT] [+] EMBL OS38026 [AGACTGTTGGAAACAAGTGCTTTGCCAAGTGCGTGACAAAGCCAGGATCAAGGTTGAGCGTGCGGGANAGTTGCATATCACGCTGTGTTGATCGTTACATTGAGGCAACTGGTATTTTCAGCCGAGCTCTGTTCAGTTCCACACACCTGAGCGCGTCGATGGTGTAGCCTTCAGTTCCTCTTAAATCAGAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10596#1 -----------------------------GCTCTGCCCGCCTCCTCCGCTTCGCACACCC 31 consensus_10596#2 ------------------------------------------------------------ consensus_10596#3 ------------------------------------------------------------ consensus_10596#4 ------------------------------------------------------------ consensus_10596#0 TTCGGCACGAGCTAGGGTTTTATTACTCCGCTCTGCCCGCCTCCTCCGCTTCGCACACCC 60 consensus_10596#1 CGCCGCGCCGGAGAATCGTCGTTGCTGGAGAGCGCTCTTCAACAACCGGTCGCCGACGAG 91 consensus_10596#2 -GCCGCGCCGGAGAATCGTCGTTGCTGGAGAGCGCTCTTCAACAACCGGTCGCCGACGAA 59 consensus_10596#3 ---------------TCGTCGTTGCTGGAGAGCGCTCTTCAACAACCGGTCGCCGACGAA 45 consensus_10596#4 ------------------------------------------------------------ consensus_10596#0 CGCCGCGCCGGAGAATCGTCGTTGCTGGAGAGCGCTCTTCAACAACCGGTCGCCGACGAA 120 consensus_10596#1 GGCTTGGGAATCAAGAAGGTGGGAAGCCGGCATGGACTCCTTCTCGTCGTCGTCCGGGTC 151 consensus_10596#2 GGCTTGGGAATCAAGAAGGTGGGAAGCCGGCATGGACTCCTTCTCGTCGTCGTCCGGGTC 119 consensus_10596#3 GGCTTGGGAATCAAGAAGGTGGGAAGCCGGCATGGACTCCTTCTCGTCGTCGTCCGGGTC 105 consensus_10596#4 ------------------------------------------------------------ consensus_10596#0 GGCTTGGGAATCAAGAAGGTGGGAAGCCGGCATGGACTCCTTCTCGTCGTCGTCCGGGTC 180 consensus_10596#1 GCCCCCCAATACGGAGGCGCTCATGGACCAGATCAAGGCGCAGCTCGCTCAGGCCTACGC 211 consensus_10596#2 GCCCCCCAATACGGAGGCGCTCATGGACCAGATCAAGGCGCAGCTCGCTCAGGCCTACGC 179 consensus_10596#3 GCCCCCCAATACGGAGGCGCTCATGGACCAGATCAAGGCGCAGCTCGCTCAGGCCTACGC 165 consensus_10596#4 ------------------------------------------------------------ consensus_10596#0 GCCCCCCAATACGGAGGCGCTCATGGACCAGATCAAGGCGCAGCTCGCTCAGGCCTACGC 240 consensus_10596#1 CCAGGAGTTCCTTGAGACTGTTGGAAACAAGTGCTTTGCCAAGTGCGTGACAAAGCCAGG 271 consensus_10596#2 CCAGGAGTTCCTTGAGACTGTTGGAAACAAGTGCTTTGCCAAGTGCGTGACAAAGCCAGG 239 consensus_10596#3 CCAGGAGTTCCTTGAGACTGTTGGAAACAAGTGCTTTGCCAAGTGCGTGACAAAGCCAGG 225 consensus_10596#4 --------------AGACTGTTGGAAACAAGTGCTTTGCCAAGTGCGTGACAAAGCCAGG 46 consensus_10596#0 CCAGGAGTTCCTTGAGACTGTTGGAAACAAGTGCTTTGCCAANTGCGTGACAAAGCCAGG 300 **************************** ***************** consensus_10596#1 ATCAAGCTTGAGCGGGAGCGAGAGCAGTTGCATATCACGCTGTGTTGATCGTTACATTGA 331 consensus_10596#2 ATCAAGCTTGAGCGGGAGCGAGAGCAGTTGCATATCACGCTGTGTTGATCGTTACATTGA 299 consensus_10596#3 ATCAAGCTTGAGCGGGAGCGAGAGCAGTTGCATATCACGCTGTGTTGATCGTTACATTGA 285 consensus_10596#4 ATCAAGGTTGAGCGTGCGGGANAG---TTGCATATCACGCTGTGTTGATCGTTACATTGA 103 consensus_10596#0 ATCAAGCTTGAGCGGGAGCGAGAGCAGTTGCATATCACGCTGTGTTGATCGTTACATTGA 360 ****** ******* * * ** ** ********************************* consensus_10596#1 GGCAACTGGTATTGTCAGCCGAGCTCTGTTCAGTTCCACACGCT---GAGCGACGATG-T 387 consensus_10596#2 GGCAACTGGTATTGTCAGCCGAGCTCTGTTCAGTTCCACACGCT---GAGCGACGATG-T 355 consensus_10596#3 GGCAACTGGTATTGTCAGCCGAGCTCTGTTCAGTTCCACACGCT---GAGCGACGATG-T 341 consensus_10596#4 GGCAACTGGTATTTTCAGCCGAGCTCTGTTCAGTTCCACACACCTGAGCGCGTCGATGGT 163 consensus_10596#0 GGCAACTGGTATTGTCAGCCGANCTCTGTTCANTTCCACACGCT---GANCGACGATG-- 415 ************* ******** ********* ******** * * ** ***** consensus_10596#1 GTAGCCTTCAGTTGCTGCTTAAATCAGAATTGGGGAAAAATGTTTTTCCTAGACTCGTTA 447 consensus_10596#2 GTAGCCTTCAGTTGCTGCTTAAATCAGAATTGGGGAAAAATGTTTTTCCTAGACTCGTTA 415 consensus_10596#3 GTAGCCTTCAGTTGCTGCTTAAATCAGAATTGGGGAAAAATGTTTTTCCTAGACTCGTTA 401 consensus_10596#4 GTAGCCTTCAGTTCCT-CTTAAATCAGAATT----------------------------- 193 consensus_10596#0 TTTACCTTCAATTGCTGCTTAAATCANAATTGGGGAAAAATGTTTTTCCTAAANTCNTTA 475 * ****** ** ** ********* **** consensus_10596#1 TTTTTGCCTTTCTAATCTGTGAGAAAGAGAGCAACCTTTATATTAATTAAGTGGCAACTA 507 consensus_10596#2 TTTTTGCCTTTCTAATCTGTGAGAAAGAGAGCAACCTTTATATTAATTAAGTGGCAACTA 475 consensus_10596#3 TTTTTGCCTTTCTAATCTGTGAGAAAGAGAGCAACCTTTATATTAATTAAGTGGCAACTA 461 consensus_10596#4 ------------------------------------------------------------ consensus_10596#0 TTTTTGCCTTTCTTATCTGTNANAAANAAAACCACCCTTATTTTTATTTANTTGGCACTA 535 consensus_10596#1 TTAGCTAAGCTGGTTTTCAGCTGTTAAAAGCCGCANAAAAAAAA---------------- 551 consensus_10596#2 TTAGCTAAGCTGGTTTTCAGCTGTTAAAAGCCGCAAATTCTGCCTTGC------------ 523 consensus_10596#3 TTAGCTAAGCTGGTTTTCAGCTGTNTANNNNNNNNNNNNNN------------------- 502 consensus_10596#4 ------------------------------------------------------------ consensus_10596#0 TTTNCTTAAAAAAAAAAAGGGGGGGNCGGTACCCATTCCCCCNATANTGAGTCCTATTAN 595 consensus_10596#1 --------------------------- consensus_10596#2 --------------------------- consensus_10596#3 --------------------------- consensus_10596#4 --------------------------- consensus_10596#0 ATTCCCTGGGGCGTCCTTTTTCAACGT 622 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||