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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_106#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1655 fasta sequence
[TTCCTCCCTCGCTCGTCCGGGGCGGCGCCGCCGCGGCCGGTGGCCGGCGGCGCCGACGATCTCTCCTTCTGCGGGTTCGCGCGTCCTCTTCCTCGGCGTTCGGAGACGCATTGCCTCTTCCCTCCCCTAGTGATGATCCATTCTCAAGGAAACCTATACTCGTGTTTACGATGATCCAGAGGAAGAAGAGGGAACGACACTTGATGAAGCTGGGAATTTCAATGATAACTTAGAAAATAATATCGAAGAGCTCTGCAGAAGATTGGAAGGCCGTTATCTCCAAGAAAAAGAGCAGGAAACCTTACTTCTGCAATGAACATGATATCAGACATATGCTCCTGATGAAATGTTTCAATTGAAAAACCAGGGAAAGAGAAATCCCTTAGGAAGAAGGAAATACTTGATCTGATGAACTCGAATCAGAACTTAGTGCTGCTGCATAGGGAGCAGGTGATCTGCTAGGGAGGAAGACTGATGCTGAAAAGAGAAAGCTGTCTACCATGCAGCAGTCCTTGCAAAAGGAAGAAGAGGCATACAAAGCATTGAAAAATACAACCGAAGTTGAAGAAAACTAGTTCTTGGGTGAAGACTACGAAGATCTGCAGAAATCACTGGAGCAAGCAGGAAGAGACTGCAGATTCTGGTCCTCTTGCTGTAGCAATACTAGCTACTGCCAGCAAAGACCAAGAGCTGCAGGAGGTCCACACAAAATAACTGAGGTGGGAGAGTTTGTGTGGGGCCTACAAATGAAGTTTGTGATCTCAGAGACATGCGCGCCAGAAGCAAGAGATGTTTTTATGGATGAACACAGTAACGGTTTCCTTCAGGTCATCTAGCAAAAGGACATGACAAGTTAGCAGTGATCAAAGAGGAAACTAACATTGAAGACCTGATAAAAGATGAAAAGGCAGAAGATGTTGAACTGAATATGATTGTAGATGAAGTTGTTCTAGTTGGCAATGATTTGGCTGGTGCTTTGCAGTTCTGTATGAAGTGCTCAGTGAGGGCTCAGATTGGGGGGCACAACCACAAACAATAATATATTTGCATAGAAAGAACTGATGAATTTGATCAAGTGGTGACTGACGGAGGCATTTGTCACCAAGTAAGATGCAGCAGACAAGATGCCTGAATGTAAACCAAGGAAATGATATCCTCTCACTCGCTTTCAATGTCTGCAAAAAAAGATGAGAGCTCAAGCTCTCAGCAAAACACCATACCTTGTTAAGTCAAGTGGCAATGCAAAATGAAGGCTAGCAAGTGACGCCAACGCCAGTGGCCTCTCTGTGGTGGAGAAAGAGCATCCTAGGAGTCTGACGCCCATGCTATGGGCCAAAAAGGTCGAGCACTTTTCCGAACATCAAACGAAGCGCCCATGCTGGGAGCAATGCCTCCGCCACCTTCAAAGGGACCGAAGAACTGAACCTGCAGTGGACTTAACTGTGAGTAAGAATTCAGTGGTAGTAGTAGCTTTCTAGCGCATCTGCTGCTGCAGGTTTGGAGCAGATTTCGAGCCCTCACCGACAGCAACGACAGGGCCAGGTACCAACGGCACATGACATGTAAAAAAACCTGAGAAAAAATTCACTCCAAGCTGATCAACTGACACAGGTGGTGAAAACTTCAGTGACCAGCGGTACTTGCCCATGCATATG]
[+] EMBL AK063487 [TTCCTCCCTCGCTCGTCCGGGGCGGCGCCGCCGCGGCCGGTGGCCGGCGGCGCCGACGATCTCTCCTTCTGCGGGTTCGCGCGTCCTCTTCCTCGGCGTTCGGAGACGCATTGCCTCTTCCCTCCCCTAGTGATGATCCATTCTCAAGGAAACCTATACTCGTGTTTACGATGATCCAGAGGAAGAAGAGGGAACGACACTTGATGAAGCTGGGAATTTCAATGATAACTTAGAAAATAATATCGAAGAGCTCTGCAGAAGATTGGAAGGCCGTTATCTCCAAGAAAAAGAGCAGGAAACCTTACTTCTGCAATGAACATGATATCAGACATATGCTCCTGATGAAATGTTTCAATTGAAAAACCAGGGAAAGAGAAATCCCTTAGGAAGAAGGAAATACTTGATCTGATGAACTCGAATCAGAACTTAGTGCTGCTGCATAGGGAGCAGGTGATCTGCTAGGGAGGAAGACTGATGCTGAAAAGAGAAAGCTGTCTACCATGCAGCAGTCCTTGCAAAAGGAAGAAGAGGCATACAAAGCATTGAAAAATACAACCGAAGTTGAAGAAAACTAGTTCTTGGGTGAAGACTACGAAGATCTGCAGAAATCACTGGAGCAAGCAGGAAGAGACTGCAGATTCTGGTCCTCTTGCTGTAGCAATACTAGCTACTGCCAGCAAAGACCAAGAGCTGCAGGAGGTCCACACAAAATAACTGAGGTGGGAGAGTTTGTGTGGGGCCTACAAATGAAGTTTGTGATCTCAGAGACATGCGCGCCAGAAGCAAGAGATGTTTTTATGGATGAACACAGTAACGGTTTCCTTCAGGTCATCTAGCAAAAGGACATGACAAGTTAGCAGTGATCAAAGAGGAAACTAACATTGAAGACCTGATAAAAGATGAAAAGGCAGAAGATGTTGAACTGAATATGATTGTAGATGAAGTTGTTCTAGTTGGCAATGATTTGGCTGGTGCTTTGCAGTTCTGTATGAAGTGCTCAGTGAGGGCTCAGATTGGGGGGCACAACCACAAACAATAATATATTTGCATAGAAAGAACTGATGAATTTGATCAAGTGGTGACTGACGGAGGCATTTGTCACCAAGTAAGATGCAGCAGACAAGATGCCTGAATGTAAACCAAGGAAATGATATCCTCTCACTCGCTTTCAATGTCTGCAAAAAAAGATGAGAGCTCAAGCTCTCAGCAAAACACCATACCTTGTTAAGTCAAGTGGCAATGCAAAATGAAGGCTAGCAAGTGACGCCAACGCCAGTGGCCTCTCTGTGGTGGAGAAAGAGCATCCTAGGAGTCTGACGCCCATGCTATGGGCCAAAAAGGTCGAGCACTTTTCCGAACATCAAACGAAGCGCCCATGCTGGGAGCAATGCCTCCGCCACCTTCAAAGGGACCGAAGAACTGAACCTGCAGTGGACTTAACTGTGAGTAAGAATTCAGTGGTAGTAGTAGCTTTCTAGCGCATCTGCTGCTGCAGGTTTGGAGCAGATTTCGAGCCCTCACCGACAGCAACGACAGGGCCAGGTACCAACGGCACATGACATGTAAAAAAACCTGAGAAAAAATTCACTCCAAGCTGATCAACTGACACAGGTGGTGAAAACTTCAGTGACCAGCGGTACTTGCCCATGCATATG]
consensusID : consensus_106#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1422 fasta sequence
[TTATTACAAAATTGCCCTCGCCGTCGTGCTCTCCGCCTCACTTCCTTCCTCCCTCGCTCGTCCGGGGCGGCGCCGCCGCGGCCGGTGGCCGGCGGCGCCGACGATCTCTCCTTCTGCGGGTTCGCGCGTCCTCTTCCTCGGCGTTCGGAGACGCATTGCCTCTTCCCTCCCCTAGGTAACGCGAGGTCCTCTTCCGTCTACCATTCCGATTCAGTTTGTGACTAGGAGTTCCATACCTCGAGTGCTCAGCAAGGATTAGGGTTTATCCAGGTTCCGAACTTCTGATCGGTTGTGTTTGGTGATGCGTGGCGGTAGTTTAGTGTTGGATCTTCTCCGATTGATCGGGACCTTAGTGGGAAAGCTACCAATGGGAAATGGGGGAACCTTTACGCAATGGACTCATCGGTCCAATTTTATTGGAAACATTTGAATACCCATCAGATTCAAATGTGGTATGTATATGTTATTAGATCAACTAATTGTTTAGTGTAGTTAGTGAATGCTTTGTTCGGTATCAGTTTACAGATTTGGATATGACACCTGCATTCTGACCAATGGGATCATCGGTTATTACTGGTAGTAATTGTTTTTGTATGTGTACATATTTGTTCCCTACTTGACCATTTTTGTAAGTTAAGCAAAAATAATTTTGTAGACTCTGTCAAACTGGTATGCTTGACAGTTTCAGTACATTGAGATCTGTTAGCAGAAGCAAAGATGCGAGGGCCTCTTCGGATTACAGTATTTTTCAAAGGATTTTTGGAGGAATACTGTTCATTGGGATTTTTCCCTTTCCTATCATTCGGAAGGCACAAACAATTCATAGGATAATCTAAGGAAAGATTCCTTTGCTGCTGATTACATAGGAAAAACACAGGAAAAATAACACCCACTCCGACCTCATTTTTGTTTTCCTTCGCGTAAGACCGAGGCAATCAAGCAATACACAAGAACTTTTACAAACACAAGCGAAGCAACTGAGCAAGAACTATGAAGGATAGGAATAAGACACAATCCAATTAAAAAGAACAAGGGGAAGAAGCAAGTCGAGGTTGCCAGCTGCTCGACCTTGTGAGTGGCCACAGCAGCAGCTCACTCCTGCCACGCGCCCGTGCGAGCTCGTCACCCGACCGCCGCCTCGCTTGCTCCGCCTACCACCGAGCTCGCCATCCCTGTTGATTTTGTCTGTTTGCTGCTCCCCATGCCTCTGGAACATTGGGGAAAAAGATGATGCGGTGAATGAACTGATGAATGAAGGGGATAAGATAAGGCTTTCCTGTCTAGAGAGTACTTGAGAGTAGTGACTAGATAGAAAATAGTATTCTATTGCTTAATTAGATTATAATCTATGAGGTTACTTGATTGTAAAATTCTTGTGTTGTATGTATTCCTGTATTCTGAATGCTTCATGTCATCAAATTC]
[+] EMBL AK110910 [TTATTACAAAATTGCCCTCGCCGTCGTGCTCTCCGCCTCACTTCCTTCCTCCCTCGCTCGTCCGGGGCGGCGCCGCCGCGGCCGGTGGCCGGCGGCGCCGACGATCTCTCCTTCTGCGGGTTCGCGCGTCCTCTTCCTCGGCGTTCGGAGACGCATTGCCTCTTCCCTCCCCTAGGTAACGCGAGGTCCTCTTCCGTCTACCATTCCGATTCAGTTTGTGACTAGGAGTTCCATACCTCGAGTGCTCAGCAAGGATTAGGGTTTATCCAGGTTCCGAACTTCTGATCGGTTGTGTTTGGTGATGCGTGGCGGTAGTTTAGTGTTGGATCTTCTCCGATTGATCGGGACCTTAGTGGGAAAGCTACCAATGGGAAATGGGGGAACCTTTACGCAATGGACTCATCGGTCCAATTTTATTGGAAACATTTGAATACCCATCAGATTCAAATGTGGTATGTATATGTTATTAGATCAACTAATTGTTTAGTGTAGTTAGTGAATGCTTTGTTCGGTATCAGTTTACAGATTTGGATATGACACCTGCATTCTGACCAATGGGATCATCGGTTATTACTGGTAGTAATTGTTTTTGTATGTGTACATATTTGTTCCCTACTTGACCATTTTTGTAAGTTAAGCAAAAATAATTTTGTAGACTCTGTCAAACTGGTATGCTTGACAGTTTCAGTACATTGAGATCTGTTAGCAGAAGCAAAGATGCGAGGGCCTCTTCGGATTACAGTATTTTTCAAAGGATTTTTGGAGGAATACTGTTCATTGGGATTTTTCCCTTTCCTATCATTCGGAAGGCACAAACAATTCATAGGATAATCTAAGGAAAGATTCCTTTGCTGCTGATTACATAGGAAAAACACAGGAAAAATAACACCCACTCCGACCTCATTTTTGTTTTCCTTCGCGTAAGACCGAGGCAATCAAGCAATACACAAGAACTTTTACAAACACAAGCGAAGCAACTGAGCAAGAACTATGAAGGATAGGAATAAGACACAATCCAATTAAAAAGAACAAGGGGAAGAAGCAAGTCGAGGTTGCCAGCTGCTCGACCTTGTGAGTGGCCACAGCAGCAGCTCACTCCTGCCACGCGCCCGTGCGAGCTCGTCACCCGACCGCCGCCTCGCTTGCTCCGCCTACCACCGAGCTCGCCATCCCTGTTGATTTTGTCTGTTTGCTGCTCCCCATGCCTCTGGAACATTGGGGAAAAAGATGATGCGGTGAATGAACTGATGAATGAAGGGGATAAGATAAGGCTTTCCTGTCTAGAGAGTACTTGAGAGTAGTGACTAGATAGAAAATAGTATTCTATTGCTTAATTAGATTATAATCTATGAGGTTACTTGATTGTAAAATTCTTGTGTTGTATGTATTCCTGTATTCTGAATGCTTCATGTCATCAAATTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_106#0 ---------------------------------------------TTCCTCCCTCGCTCG 15
consensus_106#1 TTATTACAAAATTGCCCTCGCCGTCGTGCTCTCCGCCTCACTTCCTTCCTCCCTCGCTCG 60
***************
consensus_106#0 TCCGGGGCGGCGCCGCCGCGGCCGGTGGCCGGCGGCGCCGACGATCTCTCCTTCTGCGGG 75
consensus_106#1 TCCGGGGCGGCGCCGCCGCGGCCGGTGGCCGGCGGCGCCGACGATCTCTCCTTCTGCGGG 120
************************************************************
consensus_106#0 TTCGCGCGTCCTCTTCCTCGGCGTTCGGAGACGCATTGCCTCTTCCCTCCCCTAGTGATG 135
consensus_106#1 TTCGCGCGTCCTCTTCCTCGGCGTTCGGAGACGCATTGCCTCTTCCCTCCCCTAG--GTA 178
******************************************************* *
consensus_106#0 ATCCATTCTCAAGGAAACCTATACTCGTGTTTACGATGATCCAGAGGAAGAAGAGGGAAC 195
consensus_106#1 ACGC--------GAGGTCCTCTTCCGTCTACCATTCCGATTCAGTTTGTGACTAGGA--- 227
* * * *** * * * *** *** ** ***
consensus_106#0 GACACTTGATGAAGCTGGGAATTTCAATGATAACTTAGAAAATAATATCGAAGAGCTCTG 255
consensus_106#1 ---GTTCCAT--ACCTCGAGTGCTCAGCAAGGATTAGGG----TTTATCCAGG-----TT 273
* ** * ** * *** * * * * **** * * *
consensus_106#0 CAGAAGATTGGAAGGCCGTTATCTCCAAGAAAAAGAGCAGGAAACCTTACTTCTGCAATG 315
consensus_106#1 CCGAACTTCTGA--TCGGTTGTGTTTGGTGATGCGTGGCGGTAGT-TTAGTGTTGGATCT 330
* *** * ** * *** * * * * * ** * *** * ** *
consensus_106#0 AACATGATATCAGACATATGCTCCTGATGAAATGTTTCAATTGAAAAACCAGGGAAAGAG 375
consensus_106#1 TCTCCGATT---GATCGGGACCTTAGTGGGAAAGCTACCAATGGGAAATGGGGGAACCTT 387
*** ** * * * ** * * * * ** *** *****
consensus_106#0 AAATCCCTTAGGAAGAAGGAAATACTTGATCTGATGAACTCGAATCAGAACTTAGTGCTG 435
consensus_106#1 TACGCAATGGACTCATCGGTCCAATTTTATTGGAAACATTTGAATACCCATCAGATTCAA 447
* * * ** * ** ** ** * * **** * * *
consensus_106#0 CTGCATAGGGAGCAGGTGATCTGCTAGGGAGGAAGACTGATGCTGAAAAGAGAAAGCTGT 495
consensus_106#1 ATGTGGTATGTATATGTTATTAGATCAACTAATTGTTTAGTG-TAGTTAGTGAATGCT-- 504
** * * ** ** * * * * ** * ** *** ***
consensus_106#0 CTACCATGCAGCAGTCCTTGCAAAAG-GAAGAAGAGGCATACAAAGCATTGAAAAATACA 554
consensus_106#1 TTGTTCGGTATCAGT--TTACAGATTTGGATATGACACCTGCA---TTCTGACCAATGGG 559
* * * **** ** ** * * * * ** * * ** *** ***
consensus_106#0 ACCGAAGTTGAAGAAAACTAGTTCTTGGGTGAAGACTACGAAGATCTGCAGAAATCACTG 614
consensus_106#1 ATCATCGGTTATTACTGGTAGTAATTGTTTTTGTA-TGTGTACATATTTGTTCCCTACTT 618
* * * * * * **** *** * * * * * ** * ***
consensus_106#0 GAGCAAGCAGGAAGAGACTGCAGATTCTGGTCCTCTTGCTGTAGCAATACTAGCTACTGC 674
consensus_106#1 GACCATTTTTGTAAGTTAAGCAAAAA-TAATTTTGTAGACTCTGTCAAACTGGTA--TGC 675
** ** * * *** * * * * * * * * *** * ***
consensus_106#0 CAGCAAAGACCAAGAGCTGCAGGAGGTCCACACAAAATAACTGAGGTGGGAGAGTTTGTG 734
consensus_106#1 TTGACAGTTTCAGTACATT---GAGATCTGTTAGCAGAAGCAAAGATGCGAGGGCCTCTT 732
* * ** * * *** ** * * * ** ** *** * * *
consensus_106#0 TGGGGCCTACAAATGAAGTTTGTGATCTCAGAGACATGCGCGCCAGAAGCAAGAGATGTT 794
consensus_106#1 CGGA--TTACA---GTATTTT------TCAAAGG-----ATTTTTGGAGGAATAC-TGTT 775
** **** * * *** *** ** * ** ** * ****
consensus_106#0 TTTATGGATGAACACAGTAACGGTTTCCTTCAGGTCATCTAGCAAAAGGACATGACAAGT 854
consensus_106#1 CATTGGGAT-----------TTTTCCCTTTCCTATCATTCGG--AAGGCACA-AACAATT 821
* **** * * *** **** * ** * *** **** *
consensus_106#0 TAGCAG-TGATCAAAGAGGAAACTAACATTGAAGACCTGATAAAAGATGAAAAG-GCAGA 912
consensus_106#1 CATAGGATAATCTAAGGAAAGATTC-CTTTGCTG--CTGATTACATAGGAAAAACACAGG 878
* * * *** *** * * * * *** * ***** * * * ***** ***
consensus_106#0 AGATGTTGAACTGAATATGATTGTAGATGAAGTTGTTCTAGTTGGCAATGATTTGGCTGG 972
consensus_106#1 AAAAATAACACCCACTCCGACCTCATTT----TTGTTTTCCTTCGC----GTAAGACCGA 930
* * * ** * * ** * * ***** * ** ** * * * *
consensus_106#0 TGCTTTGCAGTTCTGTATGAAGTGCTCAGTGAGGGCTCAGATTGGGGGGCACAACCACAA 1032
consensus_106#1 GGCAATCAAGCAATACACAAGAACTTTTACAAACAC---AAGCGAAGCAACTGAGCAAGA 987
** * ** * * * * * * * * * * ** *
consensus_106#0 ACAATAATATATTTGCATAGAAAGAACTGATGAATTTGATCAAGTGGTGACTGACGGAGG 1092
consensus_106#1 ACTATGAA------GGATAGGAATAAGACAC-AATCCAATTAAAAAGAACAAGGGGAAGA 1040
** ** * * **** ** ** * *** ** ** * * * **
consensus_106#0 CATTTGTCACCAAGTAAGATGCAGCAGACAAGATGCCTGAATGTAAACCAAGGAAATGAT 1152
consensus_106#1 AGCAAGTCG--AGGTTGC---CAGCTGCTCGACCTTGTGAGTGGCCACAGCAGCAGCTCA 1095
*** * ** **** * *** ** ** * *
consensus_106#0 ATCCTCTCACTCGCTTTCAATGTCTGCAAAAAAAGATGAGAGCTCAAGCTCTCAGCAAAA 1212
consensus_106#1 CTCCTGCCACGCGCCCGTGCGAGCTCGTCACCCGACCGCCGCCTCGCTTGCTCCGCCTAC 1155
**** *** *** ** * * *** *** ** *
consensus_106#0 CACCATACCTTGTTAAGTCAAGTGGCAATGCAAAATGAAGGCTAGCAAGTGACGCCAACG 1272
consensus_106#1 CACCG-AGCTCGCCATCCCTGTTGATTTTGT----------CTGTTTGCTGCTCCCCATG 1204
**** * ** * * * ** ** ** ** ** * *
consensus_106#0 CCAGTGGCCTCTCTGTGGTGGAGAAAGAGCATCCTAGGAGTCTGACGCCCATGCTATGGG 1332
consensus_106#1 CCTCTGGAACATTGGGGAAAAAGATGATGCGGTGAATGAA-CTGATG--AATGAAGGGGA 1261
** *** * * * *** ** * ** **** * *** **
consensus_106#0 CCAAA-AAGGTCGAGCACTTTTCCGAACA-TCAAACGAAGCGCCCATGCTGGGAGCAATG 1390
consensus_106#1 TAAGATAAGGCTTTCCTGTCTAGAGAGTACTTGAGAGTAGTGACTAGATAGAAAATAGTA 1321
* * **** * * * ** * * * * ** * * * * * * *
consensus_106#0 CCTCCGCCACCTTCAAAGGGACCGAAGAACTGAACCTGCAGTGGACTTAACTGTGAGTAA 1450
consensus_106#1 T-TCTATTGCTT-------AATT--AGATTATAATCTA---TGAGGTTACTTGATTGTAA 1368
** * * * *** ** ** ** *** ** ****
consensus_106#0 GAATTCAGTGGTAGTAGTAGCTTTCTAGCGCATCTGCTGCTGCAGGTTTGGAGCAGATTT 1510
consensus_106#1 AATTCTTGTGTTGTATGTA---TTCCTGTATTCTGAATGCTTCATGTC---ATCAAATTC 1422
* * *** * *** *** * **** ** ** * ** ***
consensus_106#0 CGAGCCCTCACCGACAGCAACGACAGGGCCAGGTACCAACGGCACATGACATGTAAAAAA 1570
consensus_106#1 ------------------------------------------------------------
consensus_106#0 ACCTGAGAAAAAATTCACTCCAAGCTGATCAACTGACACAGGTGGTGAAAACTTCAGTGA 1630
consensus_106#1 ------------------------------------------------------------
consensus_106#0 CCAGCGGTACTTGCCCATGCATATG 1655
consensus_106#1 -------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||