These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_106#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1655 fasta sequence [TTCCTCCCTCGCTCGTCCGGGGCGGCGCCGCCGCGGCCGGTGGCCGGCGGCGCCGACGATCTCTCCTTCTGCGGGTTCGCGCGTCCTCTTCCTCGGCGTTCGGAGACGCATTGCCTCTTCCCTCCCCTAGTGATGATCCATTCTCAAGGAAACCTATACTCGTGTTTACGATGATCCAGAGGAAGAAGAGGGAACGACACTTGATGAAGCTGGGAATTTCAATGATAACTTAGAAAATAATATCGAAGAGCTCTGCAGAAGATTGGAAGGCCGTTATCTCCAAGAAAAAGAGCAGGAAACCTTACTTCTGCAATGAACATGATATCAGACATATGCTCCTGATGAAATGTTTCAATTGAAAAACCAGGGAAAGAGAAATCCCTTAGGAAGAAGGAAATACTTGATCTGATGAACTCGAATCAGAACTTAGTGCTGCTGCATAGGGAGCAGGTGATCTGCTAGGGAGGAAGACTGATGCTGAAAAGAGAAAGCTGTCTACCATGCAGCAGTCCTTGCAAAAGGAAGAAGAGGCATACAAAGCATTGAAAAATACAACCGAAGTTGAAGAAAACTAGTTCTTGGGTGAAGACTACGAAGATCTGCAGAAATCACTGGAGCAAGCAGGAAGAGACTGCAGATTCTGGTCCTCTTGCTGTAGCAATACTAGCTACTGCCAGCAAAGACCAAGAGCTGCAGGAGGTCCACACAAAATAACTGAGGTGGGAGAGTTTGTGTGGGGCCTACAAATGAAGTTTGTGATCTCAGAGACATGCGCGCCAGAAGCAAGAGATGTTTTTATGGATGAACACAGTAACGGTTTCCTTCAGGTCATCTAGCAAAAGGACATGACAAGTTAGCAGTGATCAAAGAGGAAACTAACATTGAAGACCTGATAAAAGATGAAAAGGCAGAAGATGTTGAACTGAATATGATTGTAGATGAAGTTGTTCTAGTTGGCAATGATTTGGCTGGTGCTTTGCAGTTCTGTATGAAGTGCTCAGTGAGGGCTCAGATTGGGGGGCACAACCACAAACAATAATATATTTGCATAGAAAGAACTGATGAATTTGATCAAGTGGTGACTGACGGAGGCATTTGTCACCAAGTAAGATGCAGCAGACAAGATGCCTGAATGTAAACCAAGGAAATGATATCCTCTCACTCGCTTTCAATGTCTGCAAAAAAAGATGAGAGCTCAAGCTCTCAGCAAAACACCATACCTTGTTAAGTCAAGTGGCAATGCAAAATGAAGGCTAGCAAGTGACGCCAACGCCAGTGGCCTCTCTGTGGTGGAGAAAGAGCATCCTAGGAGTCTGACGCCCATGCTATGGGCCAAAAAGGTCGAGCACTTTTCCGAACATCAAACGAAGCGCCCATGCTGGGAGCAATGCCTCCGCCACCTTCAAAGGGACCGAAGAACTGAACCTGCAGTGGACTTAACTGTGAGTAAGAATTCAGTGGTAGTAGTAGCTTTCTAGCGCATCTGCTGCTGCAGGTTTGGAGCAGATTTCGAGCCCTCACCGACAGCAACGACAGGGCCAGGTACCAACGGCACATGACATGTAAAAAAACCTGAGAAAAAATTCACTCCAAGCTGATCAACTGACACAGGTGGTGAAAACTTCAGTGACCAGCGGTACTTGCCCATGCATATG] [+] EMBL AK063487 [TTCCTCCCTCGCTCGTCCGGGGCGGCGCCGCCGCGGCCGGTGGCCGGCGGCGCCGACGATCTCTCCTTCTGCGGGTTCGCGCGTCCTCTTCCTCGGCGTTCGGAGACGCATTGCCTCTTCCCTCCCCTAGTGATGATCCATTCTCAAGGAAACCTATACTCGTGTTTACGATGATCCAGAGGAAGAAGAGGGAACGACACTTGATGAAGCTGGGAATTTCAATGATAACTTAGAAAATAATATCGAAGAGCTCTGCAGAAGATTGGAAGGCCGTTATCTCCAAGAAAAAGAGCAGGAAACCTTACTTCTGCAATGAACATGATATCAGACATATGCTCCTGATGAAATGTTTCAATTGAAAAACCAGGGAAAGAGAAATCCCTTAGGAAGAAGGAAATACTTGATCTGATGAACTCGAATCAGAACTTAGTGCTGCTGCATAGGGAGCAGGTGATCTGCTAGGGAGGAAGACTGATGCTGAAAAGAGAAAGCTGTCTACCATGCAGCAGTCCTTGCAAAAGGAAGAAGAGGCATACAAAGCATTGAAAAATACAACCGAAGTTGAAGAAAACTAGTTCTTGGGTGAAGACTACGAAGATCTGCAGAAATCACTGGAGCAAGCAGGAAGAGACTGCAGATTCTGGTCCTCTTGCTGTAGCAATACTAGCTACTGCCAGCAAAGACCAAGAGCTGCAGGAGGTCCACACAAAATAACTGAGGTGGGAGAGTTTGTGTGGGGCCTACAAATGAAGTTTGTGATCTCAGAGACATGCGCGCCAGAAGCAAGAGATGTTTTTATGGATGAACACAGTAACGGTTTCCTTCAGGTCATCTAGCAAAAGGACATGACAAGTTAGCAGTGATCAAAGAGGAAACTAACATTGAAGACCTGATAAAAGATGAAAAGGCAGAAGATGTTGAACTGAATATGATTGTAGATGAAGTTGTTCTAGTTGGCAATGATTTGGCTGGTGCTTTGCAGTTCTGTATGAAGTGCTCAGTGAGGGCTCAGATTGGGGGGCACAACCACAAACAATAATATATTTGCATAGAAAGAACTGATGAATTTGATCAAGTGGTGACTGACGGAGGCATTTGTCACCAAGTAAGATGCAGCAGACAAGATGCCTGAATGTAAACCAAGGAAATGATATCCTCTCACTCGCTTTCAATGTCTGCAAAAAAAGATGAGAGCTCAAGCTCTCAGCAAAACACCATACCTTGTTAAGTCAAGTGGCAATGCAAAATGAAGGCTAGCAAGTGACGCCAACGCCAGTGGCCTCTCTGTGGTGGAGAAAGAGCATCCTAGGAGTCTGACGCCCATGCTATGGGCCAAAAAGGTCGAGCACTTTTCCGAACATCAAACGAAGCGCCCATGCTGGGAGCAATGCCTCCGCCACCTTCAAAGGGACCGAAGAACTGAACCTGCAGTGGACTTAACTGTGAGTAAGAATTCAGTGGTAGTAGTAGCTTTCTAGCGCATCTGCTGCTGCAGGTTTGGAGCAGATTTCGAGCCCTCACCGACAGCAACGACAGGGCCAGGTACCAACGGCACATGACATGTAAAAAAACCTGAGAAAAAATTCACTCCAAGCTGATCAACTGACACAGGTGGTGAAAACTTCAGTGACCAGCGGTACTTGCCCATGCATATG] consensusID : consensus_106#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1422 fasta sequence [TTATTACAAAATTGCCCTCGCCGTCGTGCTCTCCGCCTCACTTCCTTCCTCCCTCGCTCGTCCGGGGCGGCGCCGCCGCGGCCGGTGGCCGGCGGCGCCGACGATCTCTCCTTCTGCGGGTTCGCGCGTCCTCTTCCTCGGCGTTCGGAGACGCATTGCCTCTTCCCTCCCCTAGGTAACGCGAGGTCCTCTTCCGTCTACCATTCCGATTCAGTTTGTGACTAGGAGTTCCATACCTCGAGTGCTCAGCAAGGATTAGGGTTTATCCAGGTTCCGAACTTCTGATCGGTTGTGTTTGGTGATGCGTGGCGGTAGTTTAGTGTTGGATCTTCTCCGATTGATCGGGACCTTAGTGGGAAAGCTACCAATGGGAAATGGGGGAACCTTTACGCAATGGACTCATCGGTCCAATTTTATTGGAAACATTTGAATACCCATCAGATTCAAATGTGGTATGTATATGTTATTAGATCAACTAATTGTTTAGTGTAGTTAGTGAATGCTTTGTTCGGTATCAGTTTACAGATTTGGATATGACACCTGCATTCTGACCAATGGGATCATCGGTTATTACTGGTAGTAATTGTTTTTGTATGTGTACATATTTGTTCCCTACTTGACCATTTTTGTAAGTTAAGCAAAAATAATTTTGTAGACTCTGTCAAACTGGTATGCTTGACAGTTTCAGTACATTGAGATCTGTTAGCAGAAGCAAAGATGCGAGGGCCTCTTCGGATTACAGTATTTTTCAAAGGATTTTTGGAGGAATACTGTTCATTGGGATTTTTCCCTTTCCTATCATTCGGAAGGCACAAACAATTCATAGGATAATCTAAGGAAAGATTCCTTTGCTGCTGATTACATAGGAAAAACACAGGAAAAATAACACCCACTCCGACCTCATTTTTGTTTTCCTTCGCGTAAGACCGAGGCAATCAAGCAATACACAAGAACTTTTACAAACACAAGCGAAGCAACTGAGCAAGAACTATGAAGGATAGGAATAAGACACAATCCAATTAAAAAGAACAAGGGGAAGAAGCAAGTCGAGGTTGCCAGCTGCTCGACCTTGTGAGTGGCCACAGCAGCAGCTCACTCCTGCCACGCGCCCGTGCGAGCTCGTCACCCGACCGCCGCCTCGCTTGCTCCGCCTACCACCGAGCTCGCCATCCCTGTTGATTTTGTCTGTTTGCTGCTCCCCATGCCTCTGGAACATTGGGGAAAAAGATGATGCGGTGAATGAACTGATGAATGAAGGGGATAAGATAAGGCTTTCCTGTCTAGAGAGTACTTGAGAGTAGTGACTAGATAGAAAATAGTATTCTATTGCTTAATTAGATTATAATCTATGAGGTTACTTGATTGTAAAATTCTTGTGTTGTATGTATTCCTGTATTCTGAATGCTTCATGTCATCAAATTC] [+] EMBL AK110910 [TTATTACAAAATTGCCCTCGCCGTCGTGCTCTCCGCCTCACTTCCTTCCTCCCTCGCTCGTCCGGGGCGGCGCCGCCGCGGCCGGTGGCCGGCGGCGCCGACGATCTCTCCTTCTGCGGGTTCGCGCGTCCTCTTCCTCGGCGTTCGGAGACGCATTGCCTCTTCCCTCCCCTAGGTAACGCGAGGTCCTCTTCCGTCTACCATTCCGATTCAGTTTGTGACTAGGAGTTCCATACCTCGAGTGCTCAGCAAGGATTAGGGTTTATCCAGGTTCCGAACTTCTGATCGGTTGTGTTTGGTGATGCGTGGCGGTAGTTTAGTGTTGGATCTTCTCCGATTGATCGGGACCTTAGTGGGAAAGCTACCAATGGGAAATGGGGGAACCTTTACGCAATGGACTCATCGGTCCAATTTTATTGGAAACATTTGAATACCCATCAGATTCAAATGTGGTATGTATATGTTATTAGATCAACTAATTGTTTAGTGTAGTTAGTGAATGCTTTGTTCGGTATCAGTTTACAGATTTGGATATGACACCTGCATTCTGACCAATGGGATCATCGGTTATTACTGGTAGTAATTGTTTTTGTATGTGTACATATTTGTTCCCTACTTGACCATTTTTGTAAGTTAAGCAAAAATAATTTTGTAGACTCTGTCAAACTGGTATGCTTGACAGTTTCAGTACATTGAGATCTGTTAGCAGAAGCAAAGATGCGAGGGCCTCTTCGGATTACAGTATTTTTCAAAGGATTTTTGGAGGAATACTGTTCATTGGGATTTTTCCCTTTCCTATCATTCGGAAGGCACAAACAATTCATAGGATAATCTAAGGAAAGATTCCTTTGCTGCTGATTACATAGGAAAAACACAGGAAAAATAACACCCACTCCGACCTCATTTTTGTTTTCCTTCGCGTAAGACCGAGGCAATCAAGCAATACACAAGAACTTTTACAAACACAAGCGAAGCAACTGAGCAAGAACTATGAAGGATAGGAATAAGACACAATCCAATTAAAAAGAACAAGGGGAAGAAGCAAGTCGAGGTTGCCAGCTGCTCGACCTTGTGAGTGGCCACAGCAGCAGCTCACTCCTGCCACGCGCCCGTGCGAGCTCGTCACCCGACCGCCGCCTCGCTTGCTCCGCCTACCACCGAGCTCGCCATCCCTGTTGATTTTGTCTGTTTGCTGCTCCCCATGCCTCTGGAACATTGGGGAAAAAGATGATGCGGTGAATGAACTGATGAATGAAGGGGATAAGATAAGGCTTTCCTGTCTAGAGAGTACTTGAGAGTAGTGACTAGATAGAAAATAGTATTCTATTGCTTAATTAGATTATAATCTATGAGGTTACTTGATTGTAAAATTCTTGTGTTGTATGTATTCCTGTATTCTGAATGCTTCATGTCATCAAATTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_106#0 ---------------------------------------------TTCCTCCCTCGCTCG 15 consensus_106#1 TTATTACAAAATTGCCCTCGCCGTCGTGCTCTCCGCCTCACTTCCTTCCTCCCTCGCTCG 60 *************** consensus_106#0 TCCGGGGCGGCGCCGCCGCGGCCGGTGGCCGGCGGCGCCGACGATCTCTCCTTCTGCGGG 75 consensus_106#1 TCCGGGGCGGCGCCGCCGCGGCCGGTGGCCGGCGGCGCCGACGATCTCTCCTTCTGCGGG 120 ************************************************************ consensus_106#0 TTCGCGCGTCCTCTTCCTCGGCGTTCGGAGACGCATTGCCTCTTCCCTCCCCTAGTGATG 135 consensus_106#1 TTCGCGCGTCCTCTTCCTCGGCGTTCGGAGACGCATTGCCTCTTCCCTCCCCTAG--GTA 178 ******************************************************* * consensus_106#0 ATCCATTCTCAAGGAAACCTATACTCGTGTTTACGATGATCCAGAGGAAGAAGAGGGAAC 195 consensus_106#1 ACGC--------GAGGTCCTCTTCCGTCTACCATTCCGATTCAGTTTGTGACTAGGA--- 227 * * * *** * * * *** *** ** *** consensus_106#0 GACACTTGATGAAGCTGGGAATTTCAATGATAACTTAGAAAATAATATCGAAGAGCTCTG 255 consensus_106#1 ---GTTCCAT--ACCTCGAGTGCTCAGCAAGGATTAGGG----TTTATCCAGG-----TT 273 * ** * ** * *** * * * * **** * * * consensus_106#0 CAGAAGATTGGAAGGCCGTTATCTCCAAGAAAAAGAGCAGGAAACCTTACTTCTGCAATG 315 consensus_106#1 CCGAACTTCTGA--TCGGTTGTGTTTGGTGATGCGTGGCGGTAGT-TTAGTGTTGGATCT 330 * *** * ** * *** * * * * * ** * *** * ** * consensus_106#0 AACATGATATCAGACATATGCTCCTGATGAAATGTTTCAATTGAAAAACCAGGGAAAGAG 375 consensus_106#1 TCTCCGATT---GATCGGGACCTTAGTGGGAAAGCTACCAATGGGAAATGGGGGAACCTT 387 *** ** * * * ** * * * * ** *** ***** consensus_106#0 AAATCCCTTAGGAAGAAGGAAATACTTGATCTGATGAACTCGAATCAGAACTTAGTGCTG 435 consensus_106#1 TACGCAATGGACTCATCGGTCCAATTTTATTGGAAACATTTGAATACCCATCAGATTCAA 447 * * * ** * ** ** ** * * **** * * * consensus_106#0 CTGCATAGGGAGCAGGTGATCTGCTAGGGAGGAAGACTGATGCTGAAAAGAGAAAGCTGT 495 consensus_106#1 ATGTGGTATGTATATGTTATTAGATCAACTAATTGTTTAGTG-TAGTTAGTGAATGCT-- 504 ** * * ** ** * * * * ** * ** *** *** consensus_106#0 CTACCATGCAGCAGTCCTTGCAAAAG-GAAGAAGAGGCATACAAAGCATTGAAAAATACA 554 consensus_106#1 TTGTTCGGTATCAGT--TTACAGATTTGGATATGACACCTGCA---TTCTGACCAATGGG 559 * * * **** ** ** * * * * ** * * ** *** *** consensus_106#0 ACCGAAGTTGAAGAAAACTAGTTCTTGGGTGAAGACTACGAAGATCTGCAGAAATCACTG 614 consensus_106#1 ATCATCGGTTATTACTGGTAGTAATTGTTTTTGTA-TGTGTACATATTTGTTCCCTACTT 618 * * * * * * **** *** * * * * * ** * *** consensus_106#0 GAGCAAGCAGGAAGAGACTGCAGATTCTGGTCCTCTTGCTGTAGCAATACTAGCTACTGC 674 consensus_106#1 GACCATTTTTGTAAGTTAAGCAAAAA-TAATTTTGTAGACTCTGTCAAACTGGTA--TGC 675 ** ** * * *** * * * * * * * * *** * *** consensus_106#0 CAGCAAAGACCAAGAGCTGCAGGAGGTCCACACAAAATAACTGAGGTGGGAGAGTTTGTG 734 consensus_106#1 TTGACAGTTTCAGTACATT---GAGATCTGTTAGCAGAAGCAAAGATGCGAGGGCCTCTT 732 * * ** * * *** ** * * * ** ** *** * * * consensus_106#0 TGGGGCCTACAAATGAAGTTTGTGATCTCAGAGACATGCGCGCCAGAAGCAAGAGATGTT 794 consensus_106#1 CGGA--TTACA---GTATTTT------TCAAAGG-----ATTTTTGGAGGAATAC-TGTT 775 ** **** * * *** *** ** * ** ** * **** consensus_106#0 TTTATGGATGAACACAGTAACGGTTTCCTTCAGGTCATCTAGCAAAAGGACATGACAAGT 854 consensus_106#1 CATTGGGAT-----------TTTTCCCTTTCCTATCATTCGG--AAGGCACA-AACAATT 821 * **** * * *** **** * ** * *** **** * consensus_106#0 TAGCAG-TGATCAAAGAGGAAACTAACATTGAAGACCTGATAAAAGATGAAAAG-GCAGA 912 consensus_106#1 CATAGGATAATCTAAGGAAAGATTC-CTTTGCTG--CTGATTACATAGGAAAAACACAGG 878 * * * *** *** * * * * *** * ***** * * * ***** *** consensus_106#0 AGATGTTGAACTGAATATGATTGTAGATGAAGTTGTTCTAGTTGGCAATGATTTGGCTGG 972 consensus_106#1 AAAAATAACACCCACTCCGACCTCATTT----TTGTTTTCCTTCGC----GTAAGACCGA 930 * * * ** * * ** * * ***** * ** ** * * * * consensus_106#0 TGCTTTGCAGTTCTGTATGAAGTGCTCAGTGAGGGCTCAGATTGGGGGGCACAACCACAA 1032 consensus_106#1 GGCAATCAAGCAATACACAAGAACTTTTACAAACAC---AAGCGAAGCAACTGAGCAAGA 987 ** * ** * * * * * * * * * * ** * consensus_106#0 ACAATAATATATTTGCATAGAAAGAACTGATGAATTTGATCAAGTGGTGACTGACGGAGG 1092 consensus_106#1 ACTATGAA------GGATAGGAATAAGACAC-AATCCAATTAAAAAGAACAAGGGGAAGA 1040 ** ** * * **** ** ** * *** ** ** * * * ** consensus_106#0 CATTTGTCACCAAGTAAGATGCAGCAGACAAGATGCCTGAATGTAAACCAAGGAAATGAT 1152 consensus_106#1 AGCAAGTCG--AGGTTGC---CAGCTGCTCGACCTTGTGAGTGGCCACAGCAGCAGCTCA 1095 *** * ** **** * *** ** ** * * consensus_106#0 ATCCTCTCACTCGCTTTCAATGTCTGCAAAAAAAGATGAGAGCTCAAGCTCTCAGCAAAA 1212 consensus_106#1 CTCCTGCCACGCGCCCGTGCGAGCTCGTCACCCGACCGCCGCCTCGCTTGCTCCGCCTAC 1155 **** *** *** ** * * *** *** ** * consensus_106#0 CACCATACCTTGTTAAGTCAAGTGGCAATGCAAAATGAAGGCTAGCAAGTGACGCCAACG 1272 consensus_106#1 CACCG-AGCTCGCCATCCCTGTTGATTTTGT----------CTGTTTGCTGCTCCCCATG 1204 **** * ** * * * ** ** ** ** ** * * consensus_106#0 CCAGTGGCCTCTCTGTGGTGGAGAAAGAGCATCCTAGGAGTCTGACGCCCATGCTATGGG 1332 consensus_106#1 CCTCTGGAACATTGGGGAAAAAGATGATGCGGTGAATGAA-CTGATG--AATGAAGGGGA 1261 ** *** * * * *** ** * ** **** * *** ** consensus_106#0 CCAAA-AAGGTCGAGCACTTTTCCGAACA-TCAAACGAAGCGCCCATGCTGGGAGCAATG 1390 consensus_106#1 TAAGATAAGGCTTTCCTGTCTAGAGAGTACTTGAGAGTAGTGACTAGATAGAAAATAGTA 1321 * * **** * * * ** * * * * ** * * * * * * * consensus_106#0 CCTCCGCCACCTTCAAAGGGACCGAAGAACTGAACCTGCAGTGGACTTAACTGTGAGTAA 1450 consensus_106#1 T-TCTATTGCTT-------AATT--AGATTATAATCTA---TGAGGTTACTTGATTGTAA 1368 ** * * * *** ** ** ** *** ** **** consensus_106#0 GAATTCAGTGGTAGTAGTAGCTTTCTAGCGCATCTGCTGCTGCAGGTTTGGAGCAGATTT 1510 consensus_106#1 AATTCTTGTGTTGTATGTA---TTCCTGTATTCTGAATGCTTCATGTC---ATCAAATTC 1422 * * *** * *** *** * **** ** ** * ** *** consensus_106#0 CGAGCCCTCACCGACAGCAACGACAGGGCCAGGTACCAACGGCACATGACATGTAAAAAA 1570 consensus_106#1 ------------------------------------------------------------ consensus_106#0 ACCTGAGAAAAAATTCACTCCAAGCTGATCAACTGACACAGGTGGTGAAAACTTCAGTGA 1630 consensus_106#1 ------------------------------------------------------------ consensus_106#0 CCAGCGGTACTTGCCCATGCATATG 1655 consensus_106#1 ------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||