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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10600#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1757 fasta sequence
[AACCCTAGACAATTGGCGACCTCGAAAAGCCCTAGAGCCGTCTCCAATGGCGGACCACCAGCCCGCCGCCTCCTCCCCCAAGAGGAAGAAGAAGCACTCCAAGAAGCCGGAGGACAGCAATGCCACCGTCGACGACTCCCTCGCCGCCGCCGCCTCCCCCTCCCCCAAGAAGAAGGAGAAGCACTCCAAGAAGAAGCGGGAAGCCATCGATGCCACCATGGCCGCTGCCTCCCCCAAGAAGAAGGAGAAGAAGCACTCCAAGAAGCAGGAAGACACCAATGTCCCCGAGAAGAAGCGGGAAGTCGTGCATGTCACCGTGGACGCCTCCCTCACCGGCGCCGCCGCCGCGGGCGCAGCCCCCGTCGTCGCCTACTTCCCGACCGGCTACGACCCCCTGGCCGCCGGCGGCGGCAGGAAGGGTAGAGAGGCCCCCCGCACGAGGCTGTTCCGCCACACGAAGCACCCATCCCGCATCGAGCTCGTGGTCGGCGCCGCCACTGGTGGCGGCGGAGGGCCGGACTTCGTCGGGCGGAGCTACGCCGGCGAGGCCGTGCTGCCGCAGCTCACTGGCTACGCGCTCGGTGTCCTCGACAAGGCCTCCGGCACCCTCAAGGTCGTCCCCATCGCCGCCAACAAGAAACTGGCGCATTCGCAGCACTCTGGGGCAGTAGGGGAGGCAGTATCATCAGCAGGAGATGCTGACTTGAAGGTACAGGATATTACCAAGGCGTTTGGAACCCAGAAAGACAAGGCCAAGGATATTAAGTGGCAGTCATTAAATGAACAAAGGAATGATCCTTCTGCTTTTATGGACCTTGACCTTGGGAATGCTGATACCAGTGTGGGTGCTAATGAAAGTCAAGAACCAACTGTACGGAACATTCCACCTTATGATCCTGCAGCAGATACATCAGAAAGGGCATATCTTTTTGATGAGATTATTCCAAAGAGTATAAGGCCGCACCTTGTGGATATTATAGGACATTTTGAGTCAGGAGAAATTTCTTCAAAAGGCTATGGGAGTTTTGTGTCAAATCGTGTTAATAAATTACAGGAGCTTCAGGGTGAAGATAAGGAGAGGCTTGCTTGGATACTGTCCTACATCACACATCTCCTATCCCTGCTGGCACGGAACAGCTCCATGTCCAAGCGGCACAGAAAGGAAAACCAGGCTACCAGTGGACCAGTGATCCCACAGTATGTATATCGTAAGATGGTGCTAATGTTTACGGAACCAGGATCTAGCGCCTTGTCAACAGAGAAACACGAGCTTCTGATCAACTACATTCTCGTACTCACGCTCTACGCTGATGACTTCAGATCCGACCCTAAGGATATATGTGAAGACCTGAAAATGACCCGCCAGATGATTAAACCATATTATGACCAGCTGGGATGCAAATCTTCGTCGGCCGGTGCATTTAAATCCTCTGTAATGACACTTCCAGCTCCCCTCAAGTTCCCAAAAGAAGCTACAAGGAGAAAGCGACGAAGGTTCTGATCATCTCAGAAGGATCTTTAGCCTTATCTGAATGTGGGTGTGATAGGAAAAGATTGTTCGAAGTTGGGCCTGAGTTTATGCATGCTCAGCCCAGCCTTCCGAATTACTGAAACATGTGGAATATGGCTTTTGCCTTGTTTTTGTTTCCCCTTGTCACCTGGAGTTGCTGTCACAAAGGCAGAATATTGTTTATGTATTGATGACATTTTTTAACCCTTTTTTTTTCTCATCTTGCCTACCAGAATTTACATTGAAG]
[+] EMBL AK069228 [AACCCTAGACAATTGGCGACCTCGAAAAGCCCTAGAGCCGTCTCCAATGGCGGACCACCAGCCCGCCGCCTCCTCCCCCAAGAGGAAGAAGAAGCACTCCAAGAAGCCGGAGGACAGCAATGCCACCGTCGACGACTCCCTCGCCGCCGCCGCCTCCCCCTCCCCCAAGAAGAAGGAGAAGCACTCCAAGAAGAAGCGGGAAGCCATCGATGCCACCATGGCCGCTGCCTCCCCCAAGAAGAAGGAGAAGAAGCACTCCAAGAAGCAGGAAGACACCAATGTCCCCGAGAAGAAGCGGGAAGTCGTGCATGTCACCGTGGACGCCTCCCTCACCGGCGCCGCCGCCGCGGGCGCAGCCCCCGTCGTCGCCTACTTCCCGACCGGCTACGACCCCCTGGCCGCCGGCGGCGGCAGGAAGGGTAGAGAGGCCCCCCGCACGAGGCTGTTCCGCCACACGAAGCACCCATCCCGCATCGAGCTCGTGGTCGGCGCCGCCACTGGTGGCGGCGGAGGGCCGGACTTCGTCGGGCGGAGCTACGCCGGCGAGGCCGTGCTGCCGCAGCTCACTGGCTACGCGCTCGGTGTCCTCGACAAGGCCTCCGGCACCCTCAAGGTCGTCCCCATCGCCGCCAACAAGAAACTGGCGCATTCGCAGCACTCTGGGGCAGTAGGGGAGGCAGTATCATCAGCAGGAGATGCTGACTTGAAGGTACAGGATATTACCAAGGCGTTTGGAACCCAGAAAGACAAGGCCAAGGATATTAAGTGGCAGTCATTAAATGAACAAAGGAATGATCCTTCTGCTTTTATGGACCTTGACCTTGGGAATGCTGATACCAGTGTGGGTGCTAATGAAAGTCAAGAACCAACTGTACGGAACATTCCACCTTATGATCCTGCAGCAGATACATCAGAAAGGGCATATCTTTTTGATGAGATTATTCCAAAGAGTATAAGGCCGCACCTTGTGGATATTATAGGACATTTTGAGTCAGGAGAAATTTCTTCAAAAGGCTATGGGAGTTTTGTGTCAAATCGTGTTAATAAATTACAGGAGCTTCAGGGTGAAGATAAGGAGAGGCTTGCTTGGATACTGTCCTACATCACACATCTCCTATCCCTGCTGGCACGGAACAGCTCCATGTCCAAGCGGCACAGAAAGGAAAACCAGGCTACCAGTGGACCAGTGATCCCACAGTATGTATATCGTAAGATGGTGCTAATGTTTACGGAACCAGGATCTAGCGCCTTGTCAACAGAGAAACACGAGCTTCTGATCAACTACATTCTCGTACTCACGCTCTACGCTGATGACTTCAGATCCGACCCTAAGGATATATGTGAAGACCTGAAAATGACCCGCCAGATGATTAAACCATATTATGACCAGCTGGGATGCAAATCTTCGTCGGCCGGTGCATTTAAATCCTCTGTAATGACACTTCCAGCTCCCCTCAAGTTCCCAAAAGAAGCTACAAGGAGAAAGCGACGAAGGTTCTGATCATCTCAGAAGGATCTTTAGCCTTATCTGAATGTGGGTGTGATAGGAAAAGATTGTTCGAAGTTGGGCCTGAGTTTATGCATGCTCAGCCCAGCCTTCCGAATTACTGAAACATGTGGAATATGGCTTTTGCCTTGTTTTTGTTTCCCCTTGTCACCTGGAGTTGCTGTCACAAAGGCAGAATATTGTTTATGTATTGATGACATTTTTTAACCCTTTTTTTTTCTCATCTTGCCTACCAGAATTTACATTGAAG]
[+] EMBL OSS14687A [ AGACAATTGGCGACCTCGAAAAGCCCTAGAGCCGTCTCCAATGGCGGACCACCAGCCCGCCGCCTCCTCCCCCAAGAGGAAGAAGAAGCACTCCAAGAAGCCGGAGGACAGCAATGCCACCGTCGACGACTCCCTCGCCGCCGCCGCCTCCCCCTCCCCCAAGAAGAAGGAGAAGCACTCCAAGAAGAAGCGGGAAGCCATCGATGCCACCATGGCCGCTGCCTCCCCCAAGAAGAAGGAGAAGAAGCACTCCAAGAAGCAGGAAGACACCAATNTCCCCGAGAAGAAGCGGGAAGTCGTCCATGTCACCGTGGACGCCTCCCTNACCGGCGCCG CGNCGC ]
[+] EMBL OSS14267A [ AGACAATTGGCNACNTCGAAAAGCCCTAGAGCCGTCTCCAATNGCNGACCACCAGCCCTCCGCCTCCTCCCCCAAGAGGAAGAAGAAGCACTCCAAGAAGCCGGA GACAGCAATNCCACCGTCNACGACTCCCTCGCCNCCGCCTCNTCCCCNTNCCCCAAGAAGAAGGAGAAGCACTCCAAGAAGAAGCGGGAAGCCATCGATNCCACCATTGCCGCTNCCTCCCCCAAGAAGAAGGAGAAGAAGCACTTCAAGAAGCAGGAAGACAn ]
[+] EMBL CA999660 [ AGGTACAGGATATTACCAAGGCGTTTGGAACCCAGAAAGACAAGGCCAAGGATATTAAGTGGCAGTCATTAAATGAACAAAGGAATGATCCTTCTGCTTTTATGGACCTTGACCTTGGGAATGCTGATACCAGTGTGGGTGCTAATGAAAGTCAAGAACCAACTGTACGGAACATTCCACCTTATGATCCTGCAGCAGATACATCAGAAAGGGCATA ]
[+] EMBL CB000508 [ GTGCTAATGAAAGTCAAGAACCAACTGTACGGAACATTCCACCTTATGATCCTGCAGCAGATACATCAGAAAGGGCATATCTTTTTGATGAGATTATTCCAAAGAGTATAAGGCCGCACCTTGTGGATATTATAGGACATTTTGAGTCAGGAGAAATTTCTTCAAAAGGCTATGGGAGTTTTGTGTCAAATCGTGTTAATAAATTACAGGAGCTTCAGGGTGAAGATAAGGAGAGGCTTGCTTGGATACTGTCCTACATCACACATCTCCTGTCCCTGCTGGCACGGAACAGCTCCATGTCCAAGCGGCACAGAAAGGAAAACCAGGCTACCAGTGGACCAGTGATCCCACAGTATGTATATCGTAAGATGGTGCTAATGTTTACGGAACCAGGATCTAGCGCCTTGTCAACAGAGAAACACGAGCTTCTGATCAACTACATTCTCGTACTCACGCTCTACGCTGATGACTTCAGATCCGACCCTAAGGATATATGTGAAGACCTGAAAATGACCCGCCAGATGATTAAACCATATTATGACCAGCTGGGATGCAAATCTTCGTCGGCCGGTGCATTTAAATCCTCTGTAATGACACTTCCAGCTCCCCTCAAGTTCCCAAAAGAAGCTACAA ]
[+] EMBL AU088617 [ CCGAAAAGAAGCTACAAGGAGAAAGCGACGAAGGTTCTGATCATCTCAGAAGGATCTTTAGCCTTATCTGAATGTGGGTGTGATAGGAAAAGATTGTTCGAAGTTGGGCCTGAGTTTATGCATGCTCAGCCCAGCCTTCCGAATTACTGAAACATGTGGAATATGGCTTTTGCCTTGTTTTTGTTTCCCCTTGTCACCTGGAGTTGCTGTCACAAAGGCAGAATATTGTTTATGTATTGATGACATTTTTTAACCCTTTTTTTTTCTCA ]
consensusID : consensus_10600#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence
[TNAAATTACAGGAGCTTCAGGGTGAAGTTAAGGAGAGGCTTGCTTGGATACTGTCCTACATCACACATCTCCTATCCCTGCTGGCACGGAACAGCTCCATGTCCAAGCGGCACAGAAAGGAAAACCAGGCTACCAGTGGACCAGTGATCCCACAGTATGTATATCGTAAGATGGTGCTAATGTTTACGGAACCAGGATCTNGCGCCTTGTCAACAGAGAAACACGAGCTTCTGATCAACTACATTCTCGTACTCACGCTCTACGCTGATGACTTCAGATCCGACCCTAAGGATATATGTGAAGACCTGAAAATGACCCGCCAGATGATTAAACCATATTATGACCAGCTGGGATGCAAATCTTCGTCGGCCGGTGCATTTAAATCCTCTGTAATGANACTTCCAGCTCCCCTNNAGTTCCCAAAAGAAGCTACAAGGAGAAAGCGACGAAGGTTCTGATCATCTCAGAAGGATCTTTAGCCTTATCTGAATGTGGGTGTGATAGGAAAAGATTGTTCGAAGTTGGGCCTGAGTTTATGCATGCTCAGCCCAGCCTTCCGAATTACTGAAACATGTGGAATATGGCTTTTGCCTTGTTTTTGTTTCCCCTTGTCACCTGGAGTTGCTGTCACAAAGGCAGAATATTGTTTATGTATTGATGANATTTTTTAACCCAAAAAAAAAAAAAAA]
[+] EMBL AU096672 [TNAAATTACAGGAGCTTCAGGGTGAAGTTAAGGAGAGGCTTGCTTGGATACTGTCCTACATCACACATCTCCTATCCCTGCTGGCACGGAACAGCTCCATGTCCAAGCGGCACAGAAAGGAAAACCAGGCTACCAGTGGACCAGTGATCCCACAGTATGTATATCGTAAGATGGTGCTAATGTTTACGGAACCAGGATCTNGCGCCTTGTCAACAGAGAAACACGAGCTTCTGATCAACTACATTCTCGTACTCACGCTCTACGCTGATGACTTCAGATCCGACCCTAAGGATATATGTGAAGACCTGAAAATGACCCGCCAGATGATTAAACCATATTATGACCAGCTGGGATGCAAATCTTCGTCGGCCGGTGCATTTAAATCCTCTGTAATGANACTTCCAGCTCCCCTNNAGTTCCCAAAAGAAGCTACAAGGAGAAAGCGACGAAGGTTCTGATCATCTCAGAAGGATCTTTAGCCTTATCTGAATGTGGGTGTGATAGGAAAAGATTGTTCGAAGTTGGGCCTGAGTTTATGCATGCTCAGCCCAGCCTTCCGAATTACTGAAACATGTGGAATATGGCTTTTGCCTTGTTTTTGTTTCCCCTTGTCACCTGGAGTTGCTGTCACAAAGGCAGAATATTGTTTATGTATTGATGANATTTTTTAACCCAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10600#0 AACCCTAGACAATTGGCGACCTCGAAAAGCCCTAGAGCCGTCTCCAATGGCGGACCACCA 60
consensus_10600#1 ------------------------------------------------------------
consensus_10600#0 GCCCGCCGCCTCCTCCCCCAAGAGGAAGAAGAAGCACTCCAAGAAGCCGGAGGACAGCAA 120
consensus_10600#1 ------------------------------------------------------------
consensus_10600#0 TGCCACCGTCGACGACTCCCTCGCCGCCGCCGCCTCCCCCTCCCCCAAGAAGAAGGAGAA 180
consensus_10600#1 ------------------------------------------------------------
consensus_10600#0 GCACTCCAAGAAGAAGCGGGAAGCCATCGATGCCACCATGGCCGCTGCCTCCCCCAAGAA 240
consensus_10600#1 ------------------------------------------------------------
consensus_10600#0 GAAGGAGAAGAAGCACTCCAAGAAGCAGGAAGACACCAATGTCCCCGAGAAGAAGCGGGA 300
consensus_10600#1 ------------------------------------------------------------
consensus_10600#0 AGTCGTGCATGTCACCGTGGACGCCTCCCTCACCGGCGCCGCCGCCGCGGGCGCAGCCCC 360
consensus_10600#1 ------------------------------------------------------------
consensus_10600#0 CGTCGTCGCCTACTTCCCGACCGGCTACGACCCCCTGGCCGCCGGCGGCGGCAGGAAGGG 420
consensus_10600#1 ------------------------------------------------------------
consensus_10600#0 TAGAGAGGCCCCCCGCACGAGGCTGTTCCGCCACACGAAGCACCCATCCCGCATCGAGCT 480
consensus_10600#1 ------------------------------------------------------------
consensus_10600#0 CGTGGTCGGCGCCGCCACTGGTGGCGGCGGAGGGCCGGACTTCGTCGGGCGGAGCTACGC 540
consensus_10600#1 ------------------------------------------------------------
consensus_10600#0 CGGCGAGGCCGTGCTGCCGCAGCTCACTGGCTACGCGCTCGGTGTCCTCGACAAGGCCTC 600
consensus_10600#1 ------------------------------------------------------------
consensus_10600#0 CGGCACCCTCAAGGTCGTCCCCATCGCCGCCAACAAGAAACTGGCGCATTCGCAGCACTC 660
consensus_10600#1 ------------------------------------------------------------
consensus_10600#0 TGGGGCAGTAGGGGAGGCAGTATCATCAGCAGGAGATGCTGACTTGAAGGTACAGGATAT 720
consensus_10600#1 ------------------------------------------------------------
consensus_10600#0 TACCAAGGCGTTTGGAACCCAGAAAGACAAGGCCAAGGATATTAAGTGGCAGTCATTAAA 780
consensus_10600#1 ------------------------------------------------------------
consensus_10600#0 TGAACAAAGGAATGATCCTTCTGCTTTTATGGACCTTGACCTTGGGAATGCTGATACCAG 840
consensus_10600#1 ------------------------------------------------------------
consensus_10600#0 TGTGGGTGCTAATGAAAGTCAAGAACCAACTGTACGGAACATTCCACCTTATGATCCTGC 900
consensus_10600#1 ------------------------------------------------------------
consensus_10600#0 AGCAGATACATCAGAAAGGGCATATCTTTTTGATGAGATTATTCCAAAGAGTATAAGGCC 960
consensus_10600#1 ------------------------------------------------------------
consensus_10600#0 GCACCTTGTGGATATTATAGGACATTTTGAGTCAGGAGAAATTTCTTCAAAAGGCTATGG 1020
consensus_10600#1 ------------------------------------------------------------
consensus_10600#0 GAGTTTTGTGTCAAATCGTGTTAATAAATTACAGGAGCTTCAGGGTGAAGATAAGGAGAG 1080
consensus_10600#1 -----------------------TNAAATTACAGGAGCTTCAGGGTGAAGTTAAGGAGAG 37
************************* *********
consensus_10600#0 GCTTGCTTGGATACTGTCCTACATCACACATCTCCTATCCCTGCTGGCACGGAACAGCTC 1140
consensus_10600#1 GCTTGCTTGGATACTGTCCTACATCACACATCTCCTATCCCTGCTGGCACGGAACAGCTC 97
************************************************************
consensus_10600#0 CATGTCCAAGCGGCACAGAAAGGAAAACCAGGCTACCAGTGGACCAGTGATCCCACAGTA 1200
consensus_10600#1 CATGTCCAAGCGGCACAGAAAGGAAAACCAGGCTACCAGTGGACCAGTGATCCCACAGTA 157
************************************************************
consensus_10600#0 TGTATATCGTAAGATGGTGCTAATGTTTACGGAACCAGGATCTAGCGCCTTGTCAACAGA 1260
consensus_10600#1 TGTATATCGTAAGATGGTGCTAATGTTTACGGAACCAGGATCTNGCGCCTTGTCAACAGA 217
******************************************* ****************
consensus_10600#0 GAAACACGAGCTTCTGATCAACTACATTCTCGTACTCACGCTCTACGCTGATGACTTCAG 1320
consensus_10600#1 GAAACACGAGCTTCTGATCAACTACATTCTCGTACTCACGCTCTACGCTGATGACTTCAG 277
************************************************************
consensus_10600#0 ATCCGACCCTAAGGATATATGTGAAGACCTGAAAATGACCCGCCAGATGATTAAACCATA 1380
consensus_10600#1 ATCCGACCCTAAGGATATATGTGAAGACCTGAAAATGACCCGCCAGATGATTAAACCATA 337
************************************************************
consensus_10600#0 TTATGACCAGCTGGGATGCAAATCTTCGTCGGCCGGTGCATTTAAATCCTCTGTAATGAC 1440
consensus_10600#1 TTATGACCAGCTGGGATGCAAATCTTCGTCGGCCGGTGCATTTAAATCCTCTGTAATGAN 397
***********************************************************
consensus_10600#0 ACTTCCAGCTCCCCTCAAGTTCCCAAAAGAAGCTACAAGGAGAAAGCGACGAAGGTTCTG 1500
consensus_10600#1 ACTTCCAGCTCCCCTNNAGTTCCCAAAAGAAGCTACAAGGAGAAAGCGACGAAGGTTCTG 457
*************** *******************************************
consensus_10600#0 ATCATCTCAGAAGGATCTTTAGCCTTATCTGAATGTGGGTGTGATAGGAAAAGATTGTTC 1560
consensus_10600#1 ATCATCTCAGAAGGATCTTTAGCCTTATCTGAATGTGGGTGTGATAGGAAAAGATTGTTC 517
************************************************************
consensus_10600#0 GAAGTTGGGCCTGAGTTTATGCATGCTCAGCCCAGCCTTCCGAATTACTGAAACATGTGG 1620
consensus_10600#1 GAAGTTGGGCCTGAGTTTATGCATGCTCAGCCCAGCCTTCCGAATTACTGAAACATGTGG 577
************************************************************
consensus_10600#0 AATATGGCTTTTGCCTTGTTTTTGTTTCCCCTTGTCACCTGGAGTTGCTGTCACAAAGGC 1680
consensus_10600#1 AATATGGCTTTTGCCTTGTTTTTGTTTCCCCTTGTCACCTGGAGTTGCTGTCACAAAGGC 637
************************************************************
consensus_10600#0 AGAATATTGTTTATGTATTGATGACATTTTTTAACCCTTTTTTTTTCTCATCTTGCCTAC 1740
consensus_10600#1 AGAATATTGTTTATGTATTGATGANATTTTTTAACCCAAAAAAAAAAAAAAA-------- 689
************************ ************ *
consensus_10600#0 CAGAATTTACATTGAAG 1757
consensus_10600#1 -----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||