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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10605#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1814 fasta sequence
[GCTTCGCCCCGCCGAAGAGACGGACGCCTCCACACGTCTCTTCCTCTTCCTTGATACTGAGAGAGAGAGAGAGAGGAGGAGGAGGAGGACCAGCCATCCACCCGCGCGGCCGCGGCGAATCCATCCAATCCGCGTCGATGCGGCGGCGGCGGCGGTAGCGGGGAGGGGGTGGAAATGGTGGGGGATCAGGAGGGGAGGCGGCAGCGGCGGCGGGGGTGGGGGGAGGAGGAGGAGGACCGCATCTCGGACCTCCCCGACGCGCTGCGGCTCCAGATTCTGAGCCTCCTGCCGCTCAAGTCGGCAATCCGGACGGGGGCCCTCTCGTCGCGGTGGCGGGGGTTGTGGGAGCAGCGGTGGCCCGACCCGTCGTCGCTCGACGTGCGGCTGCCATCGGGGGGAGGAGCCGCGTCGGCGTCGGTGGCGGCGCTGCGGGCCGAGCACCTCGCAGGCATCGACCGGCGCGGGAGGCGGCGGATGGACCTCTTCTCGCTCGCCTTCCACGCGGGGCAGCTCGCGCCCCCCGAGCTGAAGCGGTTCATCGAGTACGCGGCGGCGTGCGACGTGGAGGAGGTGCGGCTGCGGCTCGACGGCGGCGGCGGGCGTGGGGCGAGAGGGGGCACGCGGCGGCCCGGCGCGCTCGCCGTGCACTTCCCCATCGGGAGCAAGCTCCTCGCGCGGCTGTCGGTGCGGGGGCTCCACCTCACGGCGTCCGCCAACGCGATGGTCGCCACGCTCGAGGTGATCCATTTCCACTCCGTCTCCCTCACCGACGCCGCGCTGCGGCGGGTGGTCTCCGCCTGCCCGCGCCTCCGCGAGCTCGAGCTCCGGTACTGCCGACACCTCCGCCGTATCGATTTCACCGTCGGGGCCTCCAATCTCAAGAGCCTCACCGTCGTCGACTGCTCCCGCGCCACGGAGCTGCGCGTGCCATCGGCGCCCCTCCTCCGGTCGTTCCGGTTCAGCGGCGCGTTCCTCTGCAGCAACATTTTCGGTAGCACCGCGGATTGTGTCGAGCATCTCTACCTCTGCTCCGGCGGGCCGGAGACAGGTTTGCCGCGCACCAACTTGCCGTCGGCAGTCCCCCGCCTGTCAAACCTCACCGTACTCACCCTATGCAGCATTGCTCTCCAGTATGTCTCTGCTTCAGTAGCCACCCCCAACGTGGAGAAGAGCTTGAACAGCTTGAGAGAGCTCCAGCTGCTCATGTTCGGAATGGCCAACTCCAACCTCGCAGATATCTATAGCTTCCTCAAGGCCTGCCGTTGTCCTCAGTTGGAGAGGCTCTTCGTGCAGCTCCCAACAAACACTTATGATTCGTTCACGACGAATTATTTGGAGGTAGCAGAGGAAGAACCGCCTGAAGGCGGATTAGAAAACCTTCGGTTGGTCAAGATGACAAACTTCAAGGGTTATCGCAATGAACTACGACTGGTGGATTTCCTGCTGAGGAAAGCTAGCCGTCTTAAC-AAACT-GTT-CCTGATTGC-TCCCAAGGAGGTTCA-CCCACAAGG-CCTCCGAAAGGTCCACTCGGAGGCACTGCCCCATTTTCTCAAGACAGATGTATTGCATCTTGAAAGAGCTTCAGCAATCGCCCAGATAATTTTTGATGAGTCTGTTAGTCCTCAGATACTACCCTTGCATTCGGAGGTCTTTGTCAGAGTTTAGCTGAAATAAGCAATTGCACCGTAGTTTAATTGCTGCTCCTTAATTATTACCATTATAGCTTTTAGGCAACAGACATGAAAAAGATCTGCAAGCATACAAAGTTTGGTATAATATATTTGCAATTTATGTTTTGAAAAA---AAAAAAAAAAGAAA]
[+] EMBL AK109618 [GCTTCGCCCCGCCGAAGAGACGGACGCCTCCACACGTCTCTTCCTCTTCCTTGATACTGAGAGAGAGAGAGAGAGGAGGAGGAGGAGGACCAGCCATCCACCCGCGCGGCCGCGGCGAATCCATCCAATCCGCGTCGATGCGGCGGCGGCGGCGGTAGCGGGGAGGGGGTGGAAATGGTGGGGGATCAGGAGGGGAGGCGGCAGCGGCGGCGGGGGTGGGGGGAGGAGGAGGAGGACCGCATCTCGGACCTCCCCGACGCGCTGCGGCTCCAGATTCTGAGCCTCCTGCCGCTCAAGTCGGCAATCCGGACGGGGGCCCTCTCGTCGCGGTGGCGGGGGTTGTGGGAGCAGCGGTGGCCCGACCCGTCGTCGCTCGACGTGCGGCTGCCATCGGGGGGAGGAGCCGCGTCGGCGTCGGTGGCGGCGCTGCGGGCCGAGCACCTCGCAGGCATCGACCGGCGCGGGAGGCGGCGGATGGACCTCTTCTCGCTCGCCTTCCACGCGGGGCAGCTCGCGCCCCCCGAGCTGAAGCGGTTCATCGAGTACGCGGCGGCGTGCGACGTGGAGGAGGTGCGGCTGCGGCTCGACGGCGGCGGCGGGCGTGGGGCGAGAGGGGGCACGCGGCGGCCCGGCGCGCTCGCCGTGCACTTCCCCATCGGGAGCAAGCTCCTCGCGCGGCTGTCGGTGCGGGGGCTCCACCTCACGGCGTCCGCCAACGCGATGGTCGCCACGCTCGAGGTGATCCATTTCCACTCCGTCTCCCTCACCGACGCCGCGCTGCGGCGGGTGGTCTCCGCCTGCCCGCGCCTCCGCGAGCTCGAGCTCCGGTACTGCCGACACCTCCGCCGTATCGATTTCACCGTCGGGGCCTCCAATCTCAAGAGCCTCACCGTCGTCGACTGCTCCCGCGCCACGGAGCTGCGCGTGCCATCGGCGCCCCTCCTCCGGTCGTTCCGGTTCAGCGGCGCGTTCCTCTGCAGCAACATTTTCGGTAGCACCGCGGATTGTGTCGAGCATCTCTACCTCTGCTCCGGCGGGCCGGAGACAGGTTTGCCGCGCACCAACTTGCCGTCGGCAGTCCCCCGCCTGTCAAACCTCACCGTACTCACCCTATGCAGCATTGCTCTCCAGTATGTCTCTGCTTCAGTAGCCACCCCCAACGTGGAGAAGAGCTTGAACAGCTTGAGAGAGCTCCAGCTGCTCATGTTCGGAATGGCCAACTCCAACCTCGCAGATATCTATAGCTTCCTCAAGGCCTGCCGTTGTCCTCAGTTGGAGAGGCTCTTCGTGCAGCTCCCAACAAACACTTATGATTCGTTCACGACGAATTATTTGGAGGTAGCAGAGGAAGAACCGCCTGAAGGCGGATTAGAAAACCTTCGGTTGGTCAAGATGACAAACTTCAAGGGTTATCGCAATGAACTACGACTGGTGGATTTCCTGCTGAGGAAAGCTAGCCGTCTTAAC AAACT GTT CCTGATTGC TCCCAAGGAGGTTCA CCCACAAGG CCTCCGAAAGGTCCACTCGGAGGCACTGCCCCATTTTCTCAAGACAGATGTATTGCATCTTGAAAGAGCTTCAGCAATCGCCCAGATAATTTTTGATGAGTCTGTTAGTCCTCAGATACTACCCTTGCATTCGGAGGTCTTTGTCAGAGTTTAGCTGAAATAAGCAATTGCACCGTAGTTTAATTGCTGCTCCTTAATTATTACCATTATAGCTTTTAGGCAACAGACATGAAAAAGATCTGCAAGCATACAAAGTTTGGTATAATATATTTGCAAT ]
[+] EMBL CB659359 [ CGTCGGTGGCGGCGCTGCGGGCCGAGCACCTCGCAGGCATCGACCGGCGCGGGAGGCGGCGGATGGACCTCTTCTCGCTCGCCTTCCACGCGGGGCAGCTCGCGCCCCCCGAGCTGAAGCGGTTCATCGAGTACGCGGCGGCGTGCGACGTGGAGGAGGTGCGGCTGCGGCTCGACGGCGGCGGCGGGCGTGGGGCGAGAGGGGGCACGCGGCGGCCCGGCGCGCTCGCCGTGCACTTCCCCATCGGGAGCAAGCTCCTCGCGCGGCTGTCGGTGCGGGGGCTCCACCTCACGGCGTCCGCCAACGCGATGGTCGCCACGCTCGAGGTGATCCATTTCCACTCCGTCTCCCTCACCGACGCCGCGCTGCGGCGGGTGGTCTCCGCCTGCCCGCGCCTCCGCGAGCTCGAGCTCCGGTACTGCCGACACCTCCGCCGTATCGATTTCACCGTCGGGGCCTCCAATCTCAAGAGCCTCACCGTCGTCGACTGCTCCCGCGCCACGGAGCTGCGCGTGCCATCGGCGCCCCTCCTCCGGTCGTTCCGGTTCAGCGGCGCGTTCCTCTGCAGCAACATTTTCGGTAGCACCGCGGATTGTGTCGAGCATCTCTACCTCTGCTCCGGCGGGCCGGAGACAGGTTTGCCGCGCACCAACTTGCCGTCGGCAGTCCCCCGCCTGTCAAACCTCACCGTACTCACCCTATGCAGCATTGCTCTCCAGTATGTCTCTGCTTCAGTAGCCACCCCCCACGTGGAGAAGAGCTTGAACAGCTTGAGAGAGCTCCAGCTGC ]
[-] EMBL CB659360 [ GCCGCGCACCAACTTGCCGTCGGCAGTCCCCCGCCTGTCAAACCTCACCGTACTCACCCTATGCAGCATTGCTCTCCAGTATGTCTCTGCTTCAGTAGCCACCCCCAACGTGGAGAAGAGCTTGAACAGCTTGAGAGAGCTCCAGCTGCTCATGTTCGGAATGGCCAACTCCAACCTCGCAGATATTTATAGCTTCCTCAAGGCCTGCCGTTGTCCTCAGTTGGAGAGGCTTTTTGTGCAGCTCCCAACAAACACTTATGATTCGTTCACGACGAATTATTTGGAGGTAGCAGAGGAAGAACCGCCTGAAGGCGGATTAGAAAACCTTCGGTTGGTCAAGATGACAAACTTCAAGGGTTATCGCAATGAACTACGACTGGTGGATTTCCTGCTGAGGAAAGCTAGCCGTCTTAAC AAACT GTT CCTGATTGC TCCCAAGGAGGTTCA CCCACAAGG CCTCCGAAAGGTCCACTCGGAGGCACTGCCCCATTTTTTCAAGACAGATGTATTGCATCTTGAAAGAGCTTCAGCAATCGCCCAGATAATTTTTGATGAGTCTGTTAGTCCTCAGATACTACCCTTGCATTCGGAGGTTTTTGTCAGAGTTTAGCTGAAATAAGCAATTGCACCGTAGTTTAATTGCTGCTCCTTAATTATTACCATTATAGCTTTTAGGCAACAGACATGAAAAAGATTTGCAAGCATACAAAGTTTGGTATAATATATTTGCAATTTATGTTTTGAAAAA AAAAAAAAAAGAA ]
[+] EMBL CF331281 [ GTCAAGATGACAAACTTCAAGGGTTATCGCAATGAACTACGACTGGTGGATTTCCTGCTGAGGAAAGCTAGCCGTCTTAAC AAACT GTT CCTGATTGC TCCCAAGGAGGTTCA CCCACAAGG CCTCCGAAAGGTCCACTCGGAGGCACTGCCCCATTTTCTCAAGACAGATGTATTGCATCATGAAAGAGCTTCAGCAATCGCCCAGATAATTTTTGATGAGTCTGTTAGTCCTCAGATACTACCCTTGCATTCGGAGGTCTTTGTCAGAATTTAGCTGAAATAAGCAATTGCACCGTAGTTTAATTGCTGCTCCTTAATTATTACCATTATAGCTTTTAGGCAACAGACATGAAAAAGATCTGCAAGCATACAAAGTTTGGTATAATATATTTGCAATTTATGTTTTGAAAAA AAAAAAAAA ]
[+] EMBL C97549 [ ncctaaacCCNTCTTAACAAAACTGGTTCCCTGATTGCNCCCCAAGGAGGTTCACCCCANAAGGCCCCCCGAAAGGTCCACTCGGAGGCACTGCCCCATTTTCTNAAAACAGATGTATTGCNTCTTGAAAGAGCTTCAGCAATCGCCCAGATAATTTTTGATGAGTCTGTTAGTCCTCAGATACTACCCTTNCATTCGGAGGTCTTTGTCAGAGTTTAGCTGAAATAAGCAATTGCACCGTAGTTTAANTGCTGCNCCTTAATTATTACCATTATANCTTTTAGGCNACAGACATGAAAAAGATCTGCAANCATACAAAGTTTGGTATAATATATTTGCAATTTATGTTTTGAAAAANNNAAAAAAAAAAAAAA]
[-] EMBL AU225233 [ TATTGCATCTTGAAAGAGCTTCAGCAATCGCCCAGATAATTTTTGATGAGTCTGTTAGTCCTCAGATANTACCCTTGCATTCGGAGGTCTTTGTCAGAATTTAGCTGAAATAAGCAATTGCACCGTAGTTTAATTGCTGCTCCTTAATTATTACCATTATAGCTTTTAGGCAACAGACATGAAAAAGATCTGCAAGCATACAAAGTTTGGTATAATATATTTGCAgcggc ]
consensusID : consensus_10605#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence
[CTGAAGGAGTAGAAAGATGAAAGTCTGTTAGTCCTCAGATACTACCCTTGCATTCGGAGGTCTTTGTCAGAATTTAGCTGAAATAAGCAATTGCACCGTAGTTTAATTGCTGCTCCTTAATTATTACCATTATAGCTTTTAGGCAACAGACATGAAAAAGATCTGCAAGCATACAAAGTTTGGTATAATATATTTGCAATTTATGTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF312135 [CTGAAGGAGTAGAAAGATGAAAGTCTGTTAGTCCTCAGATACTACCCTTGCATTCGGAGGTCTTTGTCAGAATTTAGCTGAAATAAGCAATTGCACCGTAGTTTAATTGCTGCTCCTTAATTATTACCATTATAGCTTTTAGGCAACAGACATGAAAAAGATCTGCAAGCATACAAAGTTTGGTATAATATATTTGCAATTTATGTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10605#0 GCTTCGCCCCGCCGAAGAGACGGACGCCTCCACACGTCTCTTCCTCTTCCTTGATACTGA 60
consensus_10605#1 ------------------------------------------------------------
consensus_10605#0 GAGAGAGAGAGAGAGGAGGAGGAGGAGGACCAGCCATCCACCCGCGCGGCCGCGGCGAAT 120
consensus_10605#1 ------------------------------------------------------------
consensus_10605#0 CCATCCAATCCGCGTCGATGCGGCGGCGGCGGCGGTAGCGGGGAGGGGGTGGAAATGGTG 180
consensus_10605#1 ------------------------------------------------------------
consensus_10605#0 GGGGATCAGGAGGGGAGGCGGCAGCGGCGGCGGGGGTGGGGGGAGGAGGAGGAGGACCGC 240
consensus_10605#1 ------------------------------------------------------------
consensus_10605#0 ATCTCGGACCTCCCCGACGCGCTGCGGCTCCAGATTCTGAGCCTCCTGCCGCTCAAGTCG 300
consensus_10605#1 ------------------------------------------------------------
consensus_10605#0 GCAATCCGGACGGGGGCCCTCTCGTCGCGGTGGCGGGGGTTGTGGGAGCAGCGGTGGCCC 360
consensus_10605#1 ------------------------------------------------------------
consensus_10605#0 GACCCGTCGTCGCTCGACGTGCGGCTGCCATCGGGGGGAGGAGCCGCGTCGGCGTCGGTG 420
consensus_10605#1 ------------------------------------------------------------
consensus_10605#0 GCGGCGCTGCGGGCCGAGCACCTCGCAGGCATCGACCGGCGCGGGAGGCGGCGGATGGAC 480
consensus_10605#1 ------------------------------------------------------------
consensus_10605#0 CTCTTCTCGCTCGCCTTCCACGCGGGGCAGCTCGCGCCCCCCGAGCTGAAGCGGTTCATC 540
consensus_10605#1 ------------------------------------------------------------
consensus_10605#0 GAGTACGCGGCGGCGTGCGACGTGGAGGAGGTGCGGCTGCGGCTCGACGGCGGCGGCGGG 600
consensus_10605#1 ------------------------------------------------------------
consensus_10605#0 CGTGGGGCGAGAGGGGGCACGCGGCGGCCCGGCGCGCTCGCCGTGCACTTCCCCATCGGG 660
consensus_10605#1 ------------------------------------------------------------
consensus_10605#0 AGCAAGCTCCTCGCGCGGCTGTCGGTGCGGGGGCTCCACCTCACGGCGTCCGCCAACGCG 720
consensus_10605#1 ------------------------------------------------------------
consensus_10605#0 ATGGTCGCCACGCTCGAGGTGATCCATTTCCACTCCGTCTCCCTCACCGACGCCGCGCTG 780
consensus_10605#1 ------------------------------------------------------------
consensus_10605#0 CGGCGGGTGGTCTCCGCCTGCCCGCGCCTCCGCGAGCTCGAGCTCCGGTACTGCCGACAC 840
consensus_10605#1 ------------------------------------------------------------
consensus_10605#0 CTCCGCCGTATCGATTTCACCGTCGGGGCCTCCAATCTCAAGAGCCTCACCGTCGTCGAC 900
consensus_10605#1 ------------------------------------------------------------
consensus_10605#0 TGCTCCCGCGCCACGGAGCTGCGCGTGCCATCGGCGCCCCTCCTCCGGTCGTTCCGGTTC 960
consensus_10605#1 ------------------------------------------------------------
consensus_10605#0 AGCGGCGCGTTCCTCTGCAGCAACATTTTCGGTAGCACCGCGGATTGTGTCGAGCATCTC 1020
consensus_10605#1 ------------------------------------------------------------
consensus_10605#0 TACCTCTGCTCCGGCGGGCCGGAGACAGGTTTGCCGCGCACCAACTTGCCGTCGGCAGTC 1080
consensus_10605#1 ------------------------------------------------------------
consensus_10605#0 CCCCGCCTGTCAAACCTCACCGTACTCACCCTATGCAGCATTGCTCTCCAGTATGTCTCT 1140
consensus_10605#1 ------------------------------------------------------------
consensus_10605#0 GCTTCAGTAGCCACCCCCAACGTGGAGAAGAGCTTGAACAGCTTGAGAGAGCTCCAGCTG 1200
consensus_10605#1 ------------------------------------------------------------
consensus_10605#0 CTCATGTTCGGAATGGCCAACTCCAACCTCGCAGATATCTATAGCTTCCTCAAGGCCTGC 1260
consensus_10605#1 ------------------------------------------------------------
consensus_10605#0 CGTTGTCCTCAGTTGGAGAGGCTCTTCGTGCAGCTCCCAACAAACACTTATGATTCGTTC 1320
consensus_10605#1 ------------------------------------------------------------
consensus_10605#0 ACGACGAATTATTTGGAGGTAGCAGAGGAAGAACCGCCTGAAGGCGGATTAGAAAACCTT 1380
consensus_10605#1 ------------------------------------------------------------
consensus_10605#0 CGGTTGGTCAAGATGACAAACTTCAAGGGTTATCGCAATGAACTACGACTGGTGGATTTC 1440
consensus_10605#1 ------------------------------------------------------------
consensus_10605#0 CTGCTGAGGAAAGCTAGCCGTCTTAACAAACTGTTCCTGATTGCTCCCAAGGAGGTTCAC 1500
consensus_10605#1 ------------------------------------------------------------
consensus_10605#0 CCACAAGGCCTCCGAAAGGTCCACTCGGAGGCACTGCCCCATTTTCTCAAGACAGATGTA 1560
consensus_10605#1 ------------------------------------------------------------
consensus_10605#0 TTGCATCTTGAAAGAGCTTCAGCAATCGCCCAGATAATTTTTGATGAGTCTGTTAGTCCT 1620
consensus_10605#1 ----------------CTGAAGGAGTAGAA-AGATGA--------AAGTCTGTTAGTCCT 35
** ** * * * **** * **************
consensus_10605#0 CAGATACTACCCTTGCATTCGGAGGTCTTTGTCAGAGTTTAGCTGAAATAAGCAATTGCA 1680
consensus_10605#1 CAGATACTACCCTTGCATTCGGAGGTCTTTGTCAGAATTTAGCTGAAATAAGCAATTGCA 95
************************************ ***********************
consensus_10605#0 CCGTAGTTTAATTGCTGCTCCTTAATTATTACCATTATAGCTTTTAGGCAACAGACATGA 1740
consensus_10605#1 CCGTAGTTTAATTGCTGCTCCTTAATTATTACCATTATAGCTTTTAGGCAACAGACATGA 155
************************************************************
consensus_10605#0 AAAAGATCTGCAAGCATACAAAGTTTGGTATAATATATTTGCAATTTATGTTTTGAAAAA 1800
consensus_10605#1 AAAAGATCTGCAAGCATACAAAGTTTGGTATAATATATTTGCAATTTATGTTTTGAAAAA 215
************************************************************
consensus_10605#0 AAAAAAAAAAGAAA------------------------------------------- 1814
consensus_10605#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 272
********** ***
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||