These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10605#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1814 fasta sequence [GCTTCGCCCCGCCGAAGAGACGGACGCCTCCACACGTCTCTTCCTCTTCCTTGATACTGAGAGAGAGAGAGAGAGGAGGAGGAGGAGGACCAGCCATCCACCCGCGCGGCCGCGGCGAATCCATCCAATCCGCGTCGATGCGGCGGCGGCGGCGGTAGCGGGGAGGGGGTGGAAATGGTGGGGGATCAGGAGGGGAGGCGGCAGCGGCGGCGGGGGTGGGGGGAGGAGGAGGAGGACCGCATCTCGGACCTCCCCGACGCGCTGCGGCTCCAGATTCTGAGCCTCCTGCCGCTCAAGTCGGCAATCCGGACGGGGGCCCTCTCGTCGCGGTGGCGGGGGTTGTGGGAGCAGCGGTGGCCCGACCCGTCGTCGCTCGACGTGCGGCTGCCATCGGGGGGAGGAGCCGCGTCGGCGTCGGTGGCGGCGCTGCGGGCCGAGCACCTCGCAGGCATCGACCGGCGCGGGAGGCGGCGGATGGACCTCTTCTCGCTCGCCTTCCACGCGGGGCAGCTCGCGCCCCCCGAGCTGAAGCGGTTCATCGAGTACGCGGCGGCGTGCGACGTGGAGGAGGTGCGGCTGCGGCTCGACGGCGGCGGCGGGCGTGGGGCGAGAGGGGGCACGCGGCGGCCCGGCGCGCTCGCCGTGCACTTCCCCATCGGGAGCAAGCTCCTCGCGCGGCTGTCGGTGCGGGGGCTCCACCTCACGGCGTCCGCCAACGCGATGGTCGCCACGCTCGAGGTGATCCATTTCCACTCCGTCTCCCTCACCGACGCCGCGCTGCGGCGGGTGGTCTCCGCCTGCCCGCGCCTCCGCGAGCTCGAGCTCCGGTACTGCCGACACCTCCGCCGTATCGATTTCACCGTCGGGGCCTCCAATCTCAAGAGCCTCACCGTCGTCGACTGCTCCCGCGCCACGGAGCTGCGCGTGCCATCGGCGCCCCTCCTCCGGTCGTTCCGGTTCAGCGGCGCGTTCCTCTGCAGCAACATTTTCGGTAGCACCGCGGATTGTGTCGAGCATCTCTACCTCTGCTCCGGCGGGCCGGAGACAGGTTTGCCGCGCACCAACTTGCCGTCGGCAGTCCCCCGCCTGTCAAACCTCACCGTACTCACCCTATGCAGCATTGCTCTCCAGTATGTCTCTGCTTCAGTAGCCACCCCCAACGTGGAGAAGAGCTTGAACAGCTTGAGAGAGCTCCAGCTGCTCATGTTCGGAATGGCCAACTCCAACCTCGCAGATATCTATAGCTTCCTCAAGGCCTGCCGTTGTCCTCAGTTGGAGAGGCTCTTCGTGCAGCTCCCAACAAACACTTATGATTCGTTCACGACGAATTATTTGGAGGTAGCAGAGGAAGAACCGCCTGAAGGCGGATTAGAAAACCTTCGGTTGGTCAAGATGACAAACTTCAAGGGTTATCGCAATGAACTACGACTGGTGGATTTCCTGCTGAGGAAAGCTAGCCGTCTTAAC-AAACT-GTT-CCTGATTGC-TCCCAAGGAGGTTCA-CCCACAAGG-CCTCCGAAAGGTCCACTCGGAGGCACTGCCCCATTTTCTCAAGACAGATGTATTGCATCTTGAAAGAGCTTCAGCAATCGCCCAGATAATTTTTGATGAGTCTGTTAGTCCTCAGATACTACCCTTGCATTCGGAGGTCTTTGTCAGAGTTTAGCTGAAATAAGCAATTGCACCGTAGTTTAATTGCTGCTCCTTAATTATTACCATTATAGCTTTTAGGCAACAGACATGAAAAAGATCTGCAAGCATACAAAGTTTGGTATAATATATTTGCAATTTATGTTTTGAAAAA---AAAAAAAAAAGAAA] [+] EMBL AK109618 [GCTTCGCCCCGCCGAAGAGACGGACGCCTCCACACGTCTCTTCCTCTTCCTTGATACTGAGAGAGAGAGAGAGAGGAGGAGGAGGAGGACCAGCCATCCACCCGCGCGGCCGCGGCGAATCCATCCAATCCGCGTCGATGCGGCGGCGGCGGCGGTAGCGGGGAGGGGGTGGAAATGGTGGGGGATCAGGAGGGGAGGCGGCAGCGGCGGCGGGGGTGGGGGGAGGAGGAGGAGGACCGCATCTCGGACCTCCCCGACGCGCTGCGGCTCCAGATTCTGAGCCTCCTGCCGCTCAAGTCGGCAATCCGGACGGGGGCCCTCTCGTCGCGGTGGCGGGGGTTGTGGGAGCAGCGGTGGCCCGACCCGTCGTCGCTCGACGTGCGGCTGCCATCGGGGGGAGGAGCCGCGTCGGCGTCGGTGGCGGCGCTGCGGGCCGAGCACCTCGCAGGCATCGACCGGCGCGGGAGGCGGCGGATGGACCTCTTCTCGCTCGCCTTCCACGCGGGGCAGCTCGCGCCCCCCGAGCTGAAGCGGTTCATCGAGTACGCGGCGGCGTGCGACGTGGAGGAGGTGCGGCTGCGGCTCGACGGCGGCGGCGGGCGTGGGGCGAGAGGGGGCACGCGGCGGCCCGGCGCGCTCGCCGTGCACTTCCCCATCGGGAGCAAGCTCCTCGCGCGGCTGTCGGTGCGGGGGCTCCACCTCACGGCGTCCGCCAACGCGATGGTCGCCACGCTCGAGGTGATCCATTTCCACTCCGTCTCCCTCACCGACGCCGCGCTGCGGCGGGTGGTCTCCGCCTGCCCGCGCCTCCGCGAGCTCGAGCTCCGGTACTGCCGACACCTCCGCCGTATCGATTTCACCGTCGGGGCCTCCAATCTCAAGAGCCTCACCGTCGTCGACTGCTCCCGCGCCACGGAGCTGCGCGTGCCATCGGCGCCCCTCCTCCGGTCGTTCCGGTTCAGCGGCGCGTTCCTCTGCAGCAACATTTTCGGTAGCACCGCGGATTGTGTCGAGCATCTCTACCTCTGCTCCGGCGGGCCGGAGACAGGTTTGCCGCGCACCAACTTGCCGTCGGCAGTCCCCCGCCTGTCAAACCTCACCGTACTCACCCTATGCAGCATTGCTCTCCAGTATGTCTCTGCTTCAGTAGCCACCCCCAACGTGGAGAAGAGCTTGAACAGCTTGAGAGAGCTCCAGCTGCTCATGTTCGGAATGGCCAACTCCAACCTCGCAGATATCTATAGCTTCCTCAAGGCCTGCCGTTGTCCTCAGTTGGAGAGGCTCTTCGTGCAGCTCCCAACAAACACTTATGATTCGTTCACGACGAATTATTTGGAGGTAGCAGAGGAAGAACCGCCTGAAGGCGGATTAGAAAACCTTCGGTTGGTCAAGATGACAAACTTCAAGGGTTATCGCAATGAACTACGACTGGTGGATTTCCTGCTGAGGAAAGCTAGCCGTCTTAAC AAACT GTT CCTGATTGC TCCCAAGGAGGTTCA CCCACAAGG CCTCCGAAAGGTCCACTCGGAGGCACTGCCCCATTTTCTCAAGACAGATGTATTGCATCTTGAAAGAGCTTCAGCAATCGCCCAGATAATTTTTGATGAGTCTGTTAGTCCTCAGATACTACCCTTGCATTCGGAGGTCTTTGTCAGAGTTTAGCTGAAATAAGCAATTGCACCGTAGTTTAATTGCTGCTCCTTAATTATTACCATTATAGCTTTTAGGCAACAGACATGAAAAAGATCTGCAAGCATACAAAGTTTGGTATAATATATTTGCAAT ] [+] EMBL CB659359 [ CGTCGGTGGCGGCGCTGCGGGCCGAGCACCTCGCAGGCATCGACCGGCGCGGGAGGCGGCGGATGGACCTCTTCTCGCTCGCCTTCCACGCGGGGCAGCTCGCGCCCCCCGAGCTGAAGCGGTTCATCGAGTACGCGGCGGCGTGCGACGTGGAGGAGGTGCGGCTGCGGCTCGACGGCGGCGGCGGGCGTGGGGCGAGAGGGGGCACGCGGCGGCCCGGCGCGCTCGCCGTGCACTTCCCCATCGGGAGCAAGCTCCTCGCGCGGCTGTCGGTGCGGGGGCTCCACCTCACGGCGTCCGCCAACGCGATGGTCGCCACGCTCGAGGTGATCCATTTCCACTCCGTCTCCCTCACCGACGCCGCGCTGCGGCGGGTGGTCTCCGCCTGCCCGCGCCTCCGCGAGCTCGAGCTCCGGTACTGCCGACACCTCCGCCGTATCGATTTCACCGTCGGGGCCTCCAATCTCAAGAGCCTCACCGTCGTCGACTGCTCCCGCGCCACGGAGCTGCGCGTGCCATCGGCGCCCCTCCTCCGGTCGTTCCGGTTCAGCGGCGCGTTCCTCTGCAGCAACATTTTCGGTAGCACCGCGGATTGTGTCGAGCATCTCTACCTCTGCTCCGGCGGGCCGGAGACAGGTTTGCCGCGCACCAACTTGCCGTCGGCAGTCCCCCGCCTGTCAAACCTCACCGTACTCACCCTATGCAGCATTGCTCTCCAGTATGTCTCTGCTTCAGTAGCCACCCCCCACGTGGAGAAGAGCTTGAACAGCTTGAGAGAGCTCCAGCTGC ] [-] EMBL CB659360 [ GCCGCGCACCAACTTGCCGTCGGCAGTCCCCCGCCTGTCAAACCTCACCGTACTCACCCTATGCAGCATTGCTCTCCAGTATGTCTCTGCTTCAGTAGCCACCCCCAACGTGGAGAAGAGCTTGAACAGCTTGAGAGAGCTCCAGCTGCTCATGTTCGGAATGGCCAACTCCAACCTCGCAGATATTTATAGCTTCCTCAAGGCCTGCCGTTGTCCTCAGTTGGAGAGGCTTTTTGTGCAGCTCCCAACAAACACTTATGATTCGTTCACGACGAATTATTTGGAGGTAGCAGAGGAAGAACCGCCTGAAGGCGGATTAGAAAACCTTCGGTTGGTCAAGATGACAAACTTCAAGGGTTATCGCAATGAACTACGACTGGTGGATTTCCTGCTGAGGAAAGCTAGCCGTCTTAAC AAACT GTT CCTGATTGC TCCCAAGGAGGTTCA CCCACAAGG CCTCCGAAAGGTCCACTCGGAGGCACTGCCCCATTTTTTCAAGACAGATGTATTGCATCTTGAAAGAGCTTCAGCAATCGCCCAGATAATTTTTGATGAGTCTGTTAGTCCTCAGATACTACCCTTGCATTCGGAGGTTTTTGTCAGAGTTTAGCTGAAATAAGCAATTGCACCGTAGTTTAATTGCTGCTCCTTAATTATTACCATTATAGCTTTTAGGCAACAGACATGAAAAAGATTTGCAAGCATACAAAGTTTGGTATAATATATTTGCAATTTATGTTTTGAAAAA AAAAAAAAAAGAA ] [+] EMBL CF331281 [ GTCAAGATGACAAACTTCAAGGGTTATCGCAATGAACTACGACTGGTGGATTTCCTGCTGAGGAAAGCTAGCCGTCTTAAC AAACT GTT CCTGATTGC TCCCAAGGAGGTTCA CCCACAAGG CCTCCGAAAGGTCCACTCGGAGGCACTGCCCCATTTTCTCAAGACAGATGTATTGCATCATGAAAGAGCTTCAGCAATCGCCCAGATAATTTTTGATGAGTCTGTTAGTCCTCAGATACTACCCTTGCATTCGGAGGTCTTTGTCAGAATTTAGCTGAAATAAGCAATTGCACCGTAGTTTAATTGCTGCTCCTTAATTATTACCATTATAGCTTTTAGGCAACAGACATGAAAAAGATCTGCAAGCATACAAAGTTTGGTATAATATATTTGCAATTTATGTTTTGAAAAA AAAAAAAAA ] [+] EMBL C97549 [ ncctaaacCCNTCTTAACAAAACTGGTTCCCTGATTGCNCCCCAAGGAGGTTCACCCCANAAGGCCCCCCGAAAGGTCCACTCGGAGGCACTGCCCCATTTTCTNAAAACAGATGTATTGCNTCTTGAAAGAGCTTCAGCAATCGCCCAGATAATTTTTGATGAGTCTGTTAGTCCTCAGATACTACCCTTNCATTCGGAGGTCTTTGTCAGAGTTTAGCTGAAATAAGCAATTGCACCGTAGTTTAANTGCTGCNCCTTAATTATTACCATTATANCTTTTAGGCNACAGACATGAAAAAGATCTGCAANCATACAAAGTTTGGTATAATATATTTGCAATTTATGTTTTGAAAAANNNAAAAAAAAAAAAAA] [-] EMBL AU225233 [ TATTGCATCTTGAAAGAGCTTCAGCAATCGCCCAGATAATTTTTGATGAGTCTGTTAGTCCTCAGATANTACCCTTGCATTCGGAGGTCTTTGTCAGAATTTAGCTGAAATAAGCAATTGCACCGTAGTTTAATTGCTGCTCCTTAATTATTACCATTATAGCTTTTAGGCAACAGACATGAAAAAGATCTGCAAGCATACAAAGTTTGGTATAATATATTTGCAgcggc ] consensusID : consensus_10605#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence [CTGAAGGAGTAGAAAGATGAAAGTCTGTTAGTCCTCAGATACTACCCTTGCATTCGGAGGTCTTTGTCAGAATTTAGCTGAAATAAGCAATTGCACCGTAGTTTAATTGCTGCTCCTTAATTATTACCATTATAGCTTTTAGGCAACAGACATGAAAAAGATCTGCAAGCATACAAAGTTTGGTATAATATATTTGCAATTTATGTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF312135 [CTGAAGGAGTAGAAAGATGAAAGTCTGTTAGTCCTCAGATACTACCCTTGCATTCGGAGGTCTTTGTCAGAATTTAGCTGAAATAAGCAATTGCACCGTAGTTTAATTGCTGCTCCTTAATTATTACCATTATAGCTTTTAGGCAACAGACATGAAAAAGATCTGCAAGCATACAAAGTTTGGTATAATATATTTGCAATTTATGTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10605#0 GCTTCGCCCCGCCGAAGAGACGGACGCCTCCACACGTCTCTTCCTCTTCCTTGATACTGA 60 consensus_10605#1 ------------------------------------------------------------ consensus_10605#0 GAGAGAGAGAGAGAGGAGGAGGAGGAGGACCAGCCATCCACCCGCGCGGCCGCGGCGAAT 120 consensus_10605#1 ------------------------------------------------------------ consensus_10605#0 CCATCCAATCCGCGTCGATGCGGCGGCGGCGGCGGTAGCGGGGAGGGGGTGGAAATGGTG 180 consensus_10605#1 ------------------------------------------------------------ consensus_10605#0 GGGGATCAGGAGGGGAGGCGGCAGCGGCGGCGGGGGTGGGGGGAGGAGGAGGAGGACCGC 240 consensus_10605#1 ------------------------------------------------------------ consensus_10605#0 ATCTCGGACCTCCCCGACGCGCTGCGGCTCCAGATTCTGAGCCTCCTGCCGCTCAAGTCG 300 consensus_10605#1 ------------------------------------------------------------ consensus_10605#0 GCAATCCGGACGGGGGCCCTCTCGTCGCGGTGGCGGGGGTTGTGGGAGCAGCGGTGGCCC 360 consensus_10605#1 ------------------------------------------------------------ consensus_10605#0 GACCCGTCGTCGCTCGACGTGCGGCTGCCATCGGGGGGAGGAGCCGCGTCGGCGTCGGTG 420 consensus_10605#1 ------------------------------------------------------------ consensus_10605#0 GCGGCGCTGCGGGCCGAGCACCTCGCAGGCATCGACCGGCGCGGGAGGCGGCGGATGGAC 480 consensus_10605#1 ------------------------------------------------------------ consensus_10605#0 CTCTTCTCGCTCGCCTTCCACGCGGGGCAGCTCGCGCCCCCCGAGCTGAAGCGGTTCATC 540 consensus_10605#1 ------------------------------------------------------------ consensus_10605#0 GAGTACGCGGCGGCGTGCGACGTGGAGGAGGTGCGGCTGCGGCTCGACGGCGGCGGCGGG 600 consensus_10605#1 ------------------------------------------------------------ consensus_10605#0 CGTGGGGCGAGAGGGGGCACGCGGCGGCCCGGCGCGCTCGCCGTGCACTTCCCCATCGGG 660 consensus_10605#1 ------------------------------------------------------------ consensus_10605#0 AGCAAGCTCCTCGCGCGGCTGTCGGTGCGGGGGCTCCACCTCACGGCGTCCGCCAACGCG 720 consensus_10605#1 ------------------------------------------------------------ consensus_10605#0 ATGGTCGCCACGCTCGAGGTGATCCATTTCCACTCCGTCTCCCTCACCGACGCCGCGCTG 780 consensus_10605#1 ------------------------------------------------------------ consensus_10605#0 CGGCGGGTGGTCTCCGCCTGCCCGCGCCTCCGCGAGCTCGAGCTCCGGTACTGCCGACAC 840 consensus_10605#1 ------------------------------------------------------------ consensus_10605#0 CTCCGCCGTATCGATTTCACCGTCGGGGCCTCCAATCTCAAGAGCCTCACCGTCGTCGAC 900 consensus_10605#1 ------------------------------------------------------------ consensus_10605#0 TGCTCCCGCGCCACGGAGCTGCGCGTGCCATCGGCGCCCCTCCTCCGGTCGTTCCGGTTC 960 consensus_10605#1 ------------------------------------------------------------ consensus_10605#0 AGCGGCGCGTTCCTCTGCAGCAACATTTTCGGTAGCACCGCGGATTGTGTCGAGCATCTC 1020 consensus_10605#1 ------------------------------------------------------------ consensus_10605#0 TACCTCTGCTCCGGCGGGCCGGAGACAGGTTTGCCGCGCACCAACTTGCCGTCGGCAGTC 1080 consensus_10605#1 ------------------------------------------------------------ consensus_10605#0 CCCCGCCTGTCAAACCTCACCGTACTCACCCTATGCAGCATTGCTCTCCAGTATGTCTCT 1140 consensus_10605#1 ------------------------------------------------------------ consensus_10605#0 GCTTCAGTAGCCACCCCCAACGTGGAGAAGAGCTTGAACAGCTTGAGAGAGCTCCAGCTG 1200 consensus_10605#1 ------------------------------------------------------------ consensus_10605#0 CTCATGTTCGGAATGGCCAACTCCAACCTCGCAGATATCTATAGCTTCCTCAAGGCCTGC 1260 consensus_10605#1 ------------------------------------------------------------ consensus_10605#0 CGTTGTCCTCAGTTGGAGAGGCTCTTCGTGCAGCTCCCAACAAACACTTATGATTCGTTC 1320 consensus_10605#1 ------------------------------------------------------------ consensus_10605#0 ACGACGAATTATTTGGAGGTAGCAGAGGAAGAACCGCCTGAAGGCGGATTAGAAAACCTT 1380 consensus_10605#1 ------------------------------------------------------------ consensus_10605#0 CGGTTGGTCAAGATGACAAACTTCAAGGGTTATCGCAATGAACTACGACTGGTGGATTTC 1440 consensus_10605#1 ------------------------------------------------------------ consensus_10605#0 CTGCTGAGGAAAGCTAGCCGTCTTAACAAACTGTTCCTGATTGCTCCCAAGGAGGTTCAC 1500 consensus_10605#1 ------------------------------------------------------------ consensus_10605#0 CCACAAGGCCTCCGAAAGGTCCACTCGGAGGCACTGCCCCATTTTCTCAAGACAGATGTA 1560 consensus_10605#1 ------------------------------------------------------------ consensus_10605#0 TTGCATCTTGAAAGAGCTTCAGCAATCGCCCAGATAATTTTTGATGAGTCTGTTAGTCCT 1620 consensus_10605#1 ----------------CTGAAGGAGTAGAA-AGATGA--------AAGTCTGTTAGTCCT 35 ** ** * * * **** * ************** consensus_10605#0 CAGATACTACCCTTGCATTCGGAGGTCTTTGTCAGAGTTTAGCTGAAATAAGCAATTGCA 1680 consensus_10605#1 CAGATACTACCCTTGCATTCGGAGGTCTTTGTCAGAATTTAGCTGAAATAAGCAATTGCA 95 ************************************ *********************** consensus_10605#0 CCGTAGTTTAATTGCTGCTCCTTAATTATTACCATTATAGCTTTTAGGCAACAGACATGA 1740 consensus_10605#1 CCGTAGTTTAATTGCTGCTCCTTAATTATTACCATTATAGCTTTTAGGCAACAGACATGA 155 ************************************************************ consensus_10605#0 AAAAGATCTGCAAGCATACAAAGTTTGGTATAATATATTTGCAATTTATGTTTTGAAAAA 1800 consensus_10605#1 AAAAGATCTGCAAGCATACAAAGTTTGGTATAATATATTTGCAATTTATGTTTTGAAAAA 215 ************************************************************ consensus_10605#0 AAAAAAAAAAGAAA------------------------------------------- 1814 consensus_10605#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 272 ********** *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||