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Oryza sativa
cluster # 10608 cluster # 10608       Sequences # 7       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10608#0 length = 966 sequences # 7  

consensusID : consensus_10608#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 966
fasta sequence
                              [TGGACTGAAGGAGTAGAAAATTGACGAACTTATCCACAAATTGATCCACCAACGCATCCAGTATCCACAAGCCACCCATCATCAACGCATCTGCCCATCCAGCATCAACACATCCATCCATCAACTCTCATCGGCGATCCATCCATCGAAGACACGCACCGGCGGCGGCGAGCGACTTCGGCCGGAGTCCCGACGTCTGGCAGGAGAGGGCGCGCGCGGTGATCCGATCATTAGCAAGCGCAGGAGAGGAGCTTGATGGCTAGTCAAGGTAAAAGCTAGCAAGATTGTTTCGTTTTCTTTCATCTACAGCACGCACACATCCATGCATAGGGATCCATCTGCACGTATCGTCGTCGCCGGGGAAGTCGCGGTGGCCGATTCATCTACGCGTCACAGAAGCCTCATCGATGCCGGCGTCTGTTCGAGCTGACGCTGTGCTACTTGTCCCTGGACTCGACGCTGCTAATTCAAGCTGCTGGTGATGCATCTACCCGAAGCTGCGACCTCGCCGAGATGCCGGACGTCCTTGATTTGCAAGCTTCACCGCACTGGAGCGGGCTAACCATGG-AGGAGGTCATCGGGAAGCCGCCCTGCCGGAGCGCGCCGAGGATCGCCGGAGCTGCCACCGACTGCCAAGATTTCTATCCATTCCCATGCC-GGAGGTCAAGTATCACGCATGGCGTCGAAACCAGCGGATGACGATGGAGACAAGTATGGCTGCAGTACGAAGGAAGGACGACGGGAGGACGGCGAGCCAGTGCTGTTGGATGGCAACAAGCTAGCTAATGCATGTTGATTAAGTTAATTATTGTGGCAACGTGGCCAACCAATCGGAGGACGACATGTCATCACTGCTACAGTGCCATGCACAAACCAATGCGTGGGCTGAAGAAGTCCTATTGGTTTTTCTTATTCGTCCCAAATGAGATGCCGAGCTTTGATTAAATCCGGTTACCGTCTAAAAAA]

[+] EMBL CF333264             [TGGACTGAAGGAGTAGAAAATTGACGAACTTATCCACAAATTGATCCACCAACGCATCCAGTATCCACAAGCCACCCATCATCAACGCATCTGCCCATCCAGCATCAACACATCCATCCATCAACTCTCATCGGCGATCCATCCATCGAAGACACGCACCGGCGGCGGCGAGCGACTTCGGCCGGAGTCCCGACGTCTGGCAGGAGAGGGCGCGCGCGGTGATCCGATCATTAGCAAGCGCAGGAGAGGAGCTTGATGGCTAGTCAAGGTAAAAGCTAGCAAGATTGTTTCGTTTTCTTTCATCTACAGCACGCACACATCCATGCATAGGGATCCATCTGCACGTATCG CGTCGCCGGGG AGTCGCGGTGGCCGATTCATCTACGCGTCACAGAAGCCTCATCGATGCCGGCGTCTGTTCGAGCTGACGCTGTGCTACTTGTCCCTGGACTCGACGCTGCTAATTCAAGCTGCTGGTGATGCATCTACCCGAAGCTGCGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CF332490             [                           ACTTATCCACAAATTGATCCACCAACGCATCCAGTATCCACAAGCCACCCATCATCAACGCATCTGCCCATCCAGCATCAACACATCCATCCATCAACTCTCATCGGCGATCCATCCATCGAAGACACGCACCGGCGGCGGCGAGCGACTTCGGCCGGAGTCCCGACGTCTGGCAGGAGAGGGCGCGCGCGGTGATCCGATCATTAGCAAGCGCAGGAGAGGAGCTTGATGGCTAGTCAAGGTAAAAGCTAGCAAGATTGTTTCGTTTTCTTTCATCTACAGCACGCACACATCCATGCATAGGGATCCATCTGCACGTATCGTCGTCGCCGGGGAAGTCGCGGTGGCCGATTCATCTACGCGTCACAGAAGCCTCATCGATGCCGGCGTCTGTTCGAGCTGACGCTGTGCTACTTGTCCCTGGACTCGACGCTGCTAATTCAAGCTGCTGGTGATGCATCTACCCGAAGCTGCGACCTCGCCGAGATGCCGGACGTCCTTGATTTGCAAGCTTCACCGCACTGGAGCGGGCTAACCATGGAAGGAGGTCATCGGGAAGCCGCCCTGCCGGAGCGCGCCGAGGATCGCCGGAGCTGCCACCGACTGCCAAGATTTCTATCCATTCCCATGCCGGGAGGTCAAGTATCACGCATGGCGTCGAAACCAGCGG                                                                                                                                                                                                                                                                               ]
[+] EMBL CF334837             [                           ACTTATCCACAAATTGATCCACCAACGCATCCAGTATCCACAAGCCACCCATCATCAACGCATCTGCCCATCCAGCATCAACACATCCATCCATCAACTCTCATCGGCGATCCATCCATCGAAGACACGCACCGGCGGCGGCGAGCGACTTCGGCCGGAGTCCCGACGTCTGGCAGGAGAGGGCGCGCGCGGTGATCCGATCATTAGCAAGCGCAGGAGAGGAGCTTGATGGCTAGTCAAGGTAAAAGCTAGCAAGATTGTTTCGTTTTCTTTCATCTACAGCACGCACACATCCATGCATAGGGATCCATCTGCACGTATCGTCGTCGCCGGGGAAGTCGCGGTGGCCGATTCATCTACGCGTCACAGAAGCCTCATCGATGCCGGCGTCTGTTCGAGCTGACGCTGTGCTACTTGTCCCTGGACTCGACGCTGCTAATTCAAGCTGCTGGTGATGCATCTACCCGAAGCTGCGACCTCGCCGAGATGCCGGACGTCCTTGATTTGCAAGCTTCACCGCACTGGAGCG                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CF332489             [                                                                                                                                                                                                                                                                                                                                                                                                           GAAGCCTCATCGATGCCGGCGTCTGTTCGAGCTGACGCTGTGCTACTTGTCCCTGGACTCGACGCTGCTAATTCAAGCTGCTGGTGATGCATCTACCCGAAGCTGCGACCTCGCCGAGATGCCGGACGTCCTTGATTTGCAAGCTTCACCGCACTGGAGCGGGCTAACCATGG AGGAGGTCATCGGGAAGCCGCCCTGCCGGAGCGCGCCGAGGATCGCCGGAGCTGCCACCGACTGCCAAGATTTCTATCCATTCCCATGCC GGAGGTCAAGTATCACGCATGGCGTCGAAACCAGCGGATGACGATGGAGACAAGTATGGCTGCAGTACGAAGGAAGGACGACGGGAGGACGGCGAGCCAGTGCTGTTGGATGGCAACAAGCTAGCTAATGCATGTTGATTAAGTTAATTATTGTGGCAACGTGGCCAACCAATCGGAGGACGACATGTCATCACTGCTACAGTGCCATGCACAAACCAATGCGTGGGCTGAAGAAGTCCTATTGGTTTTacaaaaaa                                                   ]
[-] EMBL CF333263             [                                                                                                                                                                                                                                                                                                                                                                                                                                                CTGTGCTACTTGTCCCTGGACTCGACGCTGCTAATTCAAGCTGCTGGTGATGCATCTACCCGAAGCTGCGACCTCGCCGAGATGCCGGACGTCCTTGATTTGCAAGCTTCACCGCACTGGAGCGGGCTAACCATGG AGGAGGTCATCGGGAAGCCGCCCTGCCGGAGCGCGCCGAGGATCGCCGGAGCTGCCACCGACTGCCAAGATTTCTATCCATTCCCATGCC GGAGGTCAAGTATCACGCATGGCGTCGAAACCAGCGGATGACGATGGAGACAAGTATGGCTGCAGTACGAAGGAAGGACGACGGGAGGACGGCGAGCCAGTGCTGTTGGATGGCAACAAGCTAGCTAATGCATGTTGATTAAGTTAATTATTGTGGCAACGTGGCCAACCAATCGGAGGACGACATGTCATCACTGCTACAGTGCCATGCACAAACCAATGCGTGGGCTGAAGAAGTCCTATTGGTTTTTCTTATTCGTCCCAAATGAGATGCCGAGCTTTGATTAAATCCGGTTACCGTCTAAAAAA]
[+] EMBL CF305907             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GACGCTGCTAATTCAAGCTGCTGGTGATGCATCTACCCGAAGCTGCGACCTCGCCGAGATGCCGGACGTCCTTGATTTGCAAGCTTCACCGCACTGGAGCGGGCTAACCATGG AGGAGGTCATCGGGAAGCCGTCCTGCCGGAGCGCGCCGAGGATCGCCGGAGCTGCCACCGACTGCCAAGATTTCTATCCATTCCCATGCC GGAGGTCAAGTATCACGCATGGCGTCGAAACCAGCGGATGACGATGGAGACAAGTATGGCTGCAGTACGAAGGAAGGACGACGGGAGGACGGCGAGCCAGTGCTGTTGGATGGCAACAAGCTAGCTAATGCATGTTGATTAAGTTAATTATTGTGGCAACGTGGCCAACCAATCGGAGGACGACATGTCATCACTGCTACAGTGCCATGCACAAACCAATGCGTGGGCTGAAGAAGTCCTATTGGTTTTTCTTATTCGTCCCAAATGAGATGCCGAGCTTTGATTAAATCCGGTTACCGTC       ]
[-] EMBL CF334836             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TTCACCGCACTGGAGCGGGCTAACCATGG AGGAGGTCATCGGGAAGCCGCCCTGCCGGAGCGCGCCGAGGATCGCCGGAGCTGCCACCGACTGCCAAGATTTCTATCCATTCCCATGCC GGAGGTCAAGTATCACGCATGGCGTCGAAACCAGCGGATGACGATGGAGACAAGTATGGCTGCAGTACGAAGGAAGGACGACGGGAGGACGGCGAGCCAGTGCTGTTGGATGGCAACAAGCTAGCTAATGCATGTTGATTAAGTTAATTATTGTGGCAACGTGGCCAACCAATCGGAGGACGACATGTCATCACTGCTACAGTGCCATGCACAAACCAATGCGTGGGCTGAAGAAGTCCTATTGGTTTTTCTTATTCGTCCCAAATGAGATGCCGAGCTTTGATTAAATCCGGTTACCGTCTAAAAAA]


>consensus_10608#0 TGGACTGAAGGAGTAGAAAATTGACGAACTTATCCACAAATTGATCCACCAACGCATCCA GTATCCACAAGCCACCCATCATCAACGCATCTGCCCATCCAGCATCAACACATCCATCCA TCAACTCTCATCGGCGATCCATCCATCGAAGACACGCACCGGCGGCGGCGAGCGACTTCG GCCGGAGTCCCGACGTCTGGCAGGAGAGGGCGCGCGCGGTGATCCGATCATTAGCAAGCG CAGGAGAGGAGCTTGATGGCTAGTCAAGGTAAAAGCTAGCAAGATTGTTTCGTTTTCTTT CATCTACAGCACGCACACATCCATGCATAGGGATCCATCTGCACGTATCGTCGTCGCCGG GGAAGTCGCGGTGGCCGATTCATCTACGCGTCACAGAAGCCTCATCGATGCCGGCGTCTG TTCGAGCTGACGCTGTGCTACTTGTCCCTGGACTCGACGCTGCTAATTCAAGCTGCTGGT GATGCATCTACCCGAAGCTGCGACCTCGCCGAGATGCCGGACGTCCTTGATTTGCAAGCT TCACCGCACTGGAGCGGGCTAACCATGGAGGAGGTCATCGGGAAGCCGCCCTGCCGGAGC GCGCCGAGGATCGCCGGAGCTGCCACCGACTGCCAAGATTTCTATCCATTCCCATGCCGG AGGTCAAGTATCACGCATGGCGTCGAAACCAGCGGATGACGATGGAGACAAGTATGGCTG CAGTACGAAGGAAGGACGACGGGAGGACGGCGAGCCAGTGCTGTTGGATGGCAACAAGCT AGCTAATGCATGTTGATTAAGTTAATTATTGTGGCAACGTGGCCAACCAATCGGAGGACG ACATGTCATCACTGCTACAGTGCCATGCACAAACCAATGCGTGGGCTGAAGAAGTCCTAT TGGTTTTTCTTATTCGTCCCAAATGAGATGCCGAGCTTTGATTAAATCCGGTTACCGTCT AAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)