These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10610#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1443 fasta sequence [CCGCCCGGCCGCGTCCGCCTCCCGGTCTGCCCCCCTCGCGGCGGCGCCGCTGCCGCCGCCGCACCAGGTCTCGCGGCCGTGGCTCCCCGCCGCCGGGTTCCGGTCGTCGGCGGCGGCGTCGGCGGCGGCGCGCGGGGATGACTACGGGAGGCGCGACGTGGACGAGAAGATATCCCCCGACGAGATCCTCTTCGAGGGCTGCGACTACAACCACTGGCTCATCACCATGGAGTTCCCCGACCCCAAGCCCACCCGCGAGGAGATGATCGAGACCTACCTCCAGACCCTCGCCAA-GGTCGTCGGAAGTTATGAAGAGGCTAAGAAGAGGATGTACGCTTTTAGTACAACAACATATGTTGGTTTTCAAGCTGTAATGACTGAGGAGATGTCAGAAAAGTTCCGTGGATTGCCTGGAGTTGTATTCATATTACCTGATTCATATCTTTAT-CCAGAGACAAAGGAGTATGGAGGAGACAAATATGAAAATGGTGTGATCACCCCAAGACCACC-TCCTGTTCA-TTATAGCAAACCTTCAAGGACTGACAGGAACCGTAACTATCGTGGAAATTACCAGAACGGTCCTCCACAGGGAAATTACCAGAACAGTCCTCCACCATATGGCTCACAGCAAGATGGAAGAGGCTATGCCCCACGGCAGAATTATGCAGATCGTCCAGGTTACAGTGGAACGTCTGGTGGCTACCAAAGTCAAACAACACAATACCAAGGGCATGCAAATCCAGCTGGACAAGGTCAAGGTTACTACAACTCACAAGAGCGCAGGAACTTCAACCAGGGGCAGGGAGGCGATTTCAGGCCTGGCGGCCCTTCAGCGCCTGGAACTTATGGTCAACCACCAGCACCTGGAAATTATGCGCAACCACATCCACCAACTTATCCTGGAAGCAACCAAGGAGCTCCTGGTGTAAATCCTGGTTATGGTGGAAACAACAGGCAGGGGCCTGGACCTGCATATGGAGGAGATAACTGGCAAGGGGGTTCTAATCAGTATCCTAGCCAAAGCGAAGGACAACAAGAGAGCTGGC-GGGGAAGGCAATAAGGGCTTTAACATGTGTTCCAGTCACGGACGAGAGGGCATAATTATGCTGCTTGAAATGTAGAAACTCCCA-CCTGTACAATAAATGACTGCGCTGCTTTACTATTTCTTGCTGCTTGCATTCATGTTCTGAAGAATGAGCTAAGCCTAGTACCAACAGTTTAAATGGATGCAGACATTAATTTTGTTGTTTTTAGCCATATTGTCATTTACATCACAAGGGCTCTTCATTTTTAATGATTGGCTTTGGGGGCTATCACTAATTGAATCGTGGCATCGGCCTACAGTTGCTAGTTCCCAGAAGTTGAATCTTATCCC-CTTAAAGATGAACAATATATTGAAGGTTAGCTTTATATAACCTGGTAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CB679773 [CCGCCCGGCCGCGTCCGCCTCCCGGTCTGCCCCCCTCGCGGCGGCGCCGCTGCCGCCGCCGCACCAGGTCTCGCGGCCGTGGCTCCCCGCCGCCGGGTTCCGGTCGTCGGCGGCGGCGTCGGCGGCGGCGCGCGGGGATGACTACGGGAGGCGCGACGTGGACGAGAAGATATCCCCCGACGAGATCCTCTTCGAGGGCTGCGACTACAACCACTGGCTCATCACCATGGAGTTCCCCGACCCCAAGCCCACCCGCGAGGAGATGATCGAGACCTACCTCCAGACCCTCGCCAA GGTCGTCGGAAGTTATGAAGAGGCTAAGAAGAGGATGTACGCTTTTAGTACAACAACATATGTTGGTTTTCAAGCTGTAATGACTGAGGAGATGTCAGAAAAGTTCCGTGGATTGCCTGGAGTTGTATTCATATTACCTGATTCATATCTTTAT CCAGAGACAAAGGAGTATGGAGGAGACAAATATGAAAATGGTGTGATCACCCCAAGACCACC TCCTGTTCA TTATAGCAAACCTTCAAGGACTGACAGGAACCGTAACTATCGTGGAAATTACCAGAACGGTCCTCCACAGGGAAATTACCAGAACAGTCCTCCACCATATGGCTCACAGCAAGATGGAAGAGGCTATGCCCCACGGCAGAATTATGCAGATCGTCCAGGTTACAGTGGAACGTCTGGTGGCTACCAAAGTCAAACAACACAATACCAAGGGCATGCAAATCCAGCTGGACAAGGTCAAag ] [+] EMBL AU062748 [ CTACGGGAGGCGCGACGTGGACGAGAAGATATCCCCCGACGAGATCCTCTTCGAGGGCTGCGACTACAACCACTGGCTCATCACCATGGAGTTCCCCGACCCCAAGCCCACCCGCGAGGAGATGATCGAGACCTACCTNCAGACCCTCGCCAA GGTCGTCGGAAGTTATGAAGNGGCTAAGAAGAGGATNTACGNTTTTAGTACAACAACATATNTTGGTTTTCAAGCTGTAATGACTNAGGAGNTGTCAGAAAAGTTCCGTGGATTNCCTGGGGTTGTATTCATATTACCTGNTTCATATCTTTAT CCAGng ] [-] EMBL AU197554 [ TACGGGAGGCGCGACGTGGACGAGAAGATATCCCCCGACGAGATCCTCTTCGAGGGCTGCGACTACAACCACTGGCTCATCACCATGGAGTTCCCCGACCCCAAGCCCACCCGCGAGGAGATGATCGAGACCTACCTCCAGACCCTCGCCAAGGGTCGTCGGAAGTTATGAAGAGGCTAAGAAGAGGATGTACGCTTTTAGTACAACAACATATGTTGGTTTTCAAGCTGTAATGACTGAGGAGATGTCAGAAAAGTTCCGTGGATTGCCTGGAGTTGTATTCATATTACCTGATTCATATCTTTATCCCAGAGACAAAGGAGTATGGAGGAGACAAATATGAAAATGGTGTGATCACCCCAAGACCACCTTCCTGTTCATTTATAGCAAAacc ] [+] EMBL C28461 [ AAGAAGAGGATGTACGCTTTTAGTACAACAACATATGTTGGTTTTCAAGCTGTAATGACTGAGGAGATGTCAGAAAAGTTCCGTGGATTGCCTGGAGTTGTATTCATATTACCTGATTCATATCTTTAT CCAGAGACAAAGGAGTATGGAGGAGACAAATATGAAAATGGTGTGATCACCCCAAGACCACC TCCTGTTCA TTATAGCAAACCTTCAAGGACTGACAGGAACCGTAACTATCGTGGAAATTACCAGAACGGTCCTCCACAGGGAAATTACCAGAACAGTCCTCCACCATATGGCTCACAGCAAGATGGAAGAGGCTATG CCCACGGCAGAATTATGCAGATCGTCCAGGTTACAGTGG ACGTCTTGTGGNTACCAAAGTCAAACAACACAATNCC AGGGCAT CAAATCCACTTGGca ] [+] EMBL CF317101 [ CCAAGACCACC TCCTGTTCA TTATAGCAAACCTTCAAGGACTGACAGGAACCGTAACTATCGTGGAAATTACCAGAACGGTCCTCCACAGGGAAATTACCAGAACAGTCCTCCACCATATGGCTCACAGCAAGATGGAAGAGGCTATGCCCCACGGCAGAATTATGCAGATCGTCCAGGTTACAGTGGAACGTCTGGTGGCTACCAAAGTCAAACAACACAATACCAAGGGCATGCAAATCCAGCTGGACAAGGTCAAGGTTACTACAACTCACAAGAGCGCAGGAACTTCAACCAGGGGCAGGGAGGCGATTTCAGGCCTGGCGGCCCTTCAGCGCCTGGAACTTATGGTCAACCACCAGCACCTGGAAATTATGCGCAACCACATCCACCAACTTATCCTGGAAGCAACCAAGGAGCTCCTGGTGTAAATCCTGGTTATGGTGGAAACAACAGGCAGGGGCCTGGACCTGCATATGGAGGAGATAACTGGCAAGGGGGTTCTAATCAGTATCCTAGCCAAAGCGAAGGACAACAAGAGAGCTGGCGGGGGAAGGCAATAAGGGCTTTAACATGTGTTCCAGTCACGGACGAGAGGGCATAATTATGCTGCTTGAAATGTAGAAACTCCCA CCTGTACAATAAATGACTGCGCTGCTTTACTATTTCTTGCTGCTTGCATTCATGTTCTGAAGAATGAGCTAAGCCTAGTACCAACAGTct ] [-] EMBL CB679774 [ AGAGGCTATGCCCCACGGCAGAATTATGCAGATCGTCCAGGTTACAGTGGAACGTCTGGTGGCTACCAAAGTCAAACAACACAATACCAAGGGCATGCAAATCCAGCTGGACAAGGTCAAGGTTACTACAACTCACAAGAGCGCAGGAACTTCAACCAGGGGCAGGGAGGCGATTTCAGGCCTGGCGGCCCTTCAGCGCCTGGAACTTATGGTCAACCACCAGCACCTGGAAATTATGCGCAACCACATCCACCAACTTATTCTGGAAGCAACCAAGGAGCTCCTGGTGTAAATCCTGGTTATGGTGGAAACAACAGGCAGGGGCCTGGACCTGCATATGGAGGAGATAACTGGCAAGGGGGTTCTAATCAGTATCCTAGCCAAAGCGAAGGACAACAAGAGAGCTGGC GGGGAAGCCAATAAGGGCTTTAACATGTGTTCCAGTCACGGACGAGAGGGCATAATTATGCTGCTTGAAATGTAGAAACTCCCA CCTGTACAATAAATGACTGCGCTGCTTTACTATTTCTTGCTGCTTGCATTCATGTTCTGAAGAATGAGCTAAGCCTAGTACCAACAGTTTAAATGGATGCAGACATTAATTTTGTTGTTTTTAGCCATATTGTCATTTACATCACAAGGGCTCTTCATTTTTAATGATTGGCTTTGGGGGCTATCACTAATTGAATCGTGGCATCGGCCTACAGTTGCTAGTTCCCAGAAGTTGAATCTTATCCC CTTAAAGATGAACAATATAT ] [-] EMBL CF317100 [ ACCTGCATATGGAGGAGATAACTGGCAAGGGGGTTTTAATCAGTATCCTAGCCAAAGCGAAGGACAACAAAAAAGCTGGC GGGGAAGGCAATAAGGGCTTTAACATGTGTTCCAGTCACGGACGAGAGGGCATAATTATGCTGCTTGAAATGTAGAAACTCCCACCCTGTACAATAAAAGACTGCGCTGCTTTACTATTTTTTGCTGCTTGCATTCATGTTTTGAAGAATGAGGTAAGCCTAGTACCCACAGTTTAAATGGATGCAGACATTAATTTTGTTGTTTTTAGCCATATTGTCATTTACATCCCAAGGGGTTTTCATTTTTAATGATTGGCATGGGTGTTTATCCCTAATTGAATTGTGGCATCGGCCTACAGTTGGTAGTTCCCAGAAGTTGAATTTTATCCCAGATGGA ATGAACCATATATTGAAGGTTAGCTTTATATAACCTGGTAAAAAAAAAAAAAAAAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||