|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10615#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1248 fasta sequence
[TTAAAAGCTAAGCAAGCAACAGCCAGACTCGAAGATGAAATGAATGAAGCTGAGGATGAAAAGGCGCAAGTGACCATAAAGTTCAAGAAAAACATAAAATGGACTATTCATTATGAATCAACAGGTTTAAATTTTGAGGTTCACTACGCTTTGCAAGAGCAACCTCATATTCTGTTAGCCCAGATTGCTCAGAGAACAGCTAGGTCTGTTTTTGTCAAGGCCTGTAAGAATATTGATCGATGTGAAGTGAATAAACCAAAGAAGATAGATAATAATACGATAAATACTCCCATCACTCTACAAACAGCAGGGGTGAACTTTGAAGTATTCCATAAGTTAGTGGACTAT-CTCGATATCAATGAGGTCAGATCCAATGATATACACGCTATGTTGAACACATATGGGGTAGAGGCTGCAAGGGCAACCATCATTGGGGAAGTGAAGGGCGTATTCGGTGCTTATGGTATCCATGTTGACATGAGGCATCTGAACTTGATTGCGGATTTCATGACCTTCGACGGCGGTTACCGACCGATGAGCAGGCTAGGGATGGGCCAGTTCAGCACCTCGCCATTTGGTAAGATGACTTTTGAGACGGCAACCAAGTTTATTGTGGAAGCAGCTTCTCATGGAGAGTCTGACACACTGGACGGCCCTTCGGCAAGCGTCTGTCTGGGGAAACCTGTTAAGGTGGGGACGGGTTCCTTTGGCTTGCTGCAGAATTTTTCCCTGGAGCAACCTGTTGCGATGTAAGCATACATGTAGCATCATCAGCCTGTTTGCTTTACTGGATTAGTCCAATTTTGATGGAGGCTGCCATAGAGCAGTAGGAATGTGTTACATATACGGTACTTTTTGCTAGCAAGTGCAGCAAGTTATGTCAGTTCTCAGTTGTGTTTGTGTAGCAGGAAACGAACATGTGAACACTGATACTCCCTTTGGTAGTAGTATGGACATTAGTCTCTGTGTAGACTGTGTGGAGTATCAGGCTGGCAGCAGCAGTAGCAGCATGATCTTGGTTTCTTTGCCATTTTAGATGCATTTCAGCACCCTTGTTTTTTCTGCCTTTAAACCCAAATCCGATAGCCACTTTGCCGTTGCTGTCTGCATGAGGTTAAGATGGCAGCTGAGGGGGAATATATCTAGGACTCCAGCTGCAATATCTTTTCTATAATTGAGTGTGCAAGACAGCATCCTCTGATTCAGGGCCTGTTTAGATCCATATGAGTAGATGGATCTCCTTCTTCT]
[+] EMBL CA767334 [TTAAAAGCTAAGCAAGCAACAGCCAGACTCGAAGATGAAATGAATGAAGCTGAGGATGAAAAGGCGCAAGTGACCATAAAGTTCAAGAAAAACATAAAATGGACTATTCATTATGAATCAACAGGTTTAAATTTTGAGGTTCACTACGCTTTGCAAGAGCAACCTCATATTCTGTTAGCCCAGATTGCTCAGAGAACAGCTAGGTCTGTTTTTGTCAAGGCCTGTAAGAATATTGATCGATGTGAAGTGAATAAACCAAAGAAGATAGATAATAATACGATAAATACTCCCATCACTCTACAAACAGCGGGGGTGAACTTTGAAGTATTCCATAAGTTAGTGGACTAT CTCGATATCAATGAGGTCAGATCCAATGATATACACGCTATGTTGAACACATATGGGGTAGAGGCTGCAAGGGCAACCATCATTGGGGAAGTGAAGGGCGTATTCGGTGCTTATGGTATCCATGTTGACATGAGGCATCTGAACTTGATTGCGGATTTCATGACCTTCGACGGCGGTTACCGACCGATGAGCAGGCTAGGGATGGGCCAGTTCAGCACCTCGCCATTTGGTAAGATGACTTTTGAGACGGCAACCAAGTTTATTGTGGAAGCATCTTCTCATGGAGAGTCTGACACACTGGACGGCCCTTCGGCAAGCGTCTGTCTGGGGAAACCTGNTAAGGTGGGGACGGGTTCCTTTGGCTTGCTGCAGAATTTTTNCCTGGAGCAACCTGNTGCGATGTAAGCATACATGTAGCATCATCAGCCTGGTTGCTTTACTGGATTAGTCCAATTTTGATGGANGCTGnc ]
[+] EMBL AK059094 [ TAAGCAAGCAACAGCCAGACTCGAAGATGAAATGAATGAAGCTGAGGATGAAAAGGCGCAAGTGACCATAAAGTTCAAGAAAAACATAAAATGGACTATTCATTATGAATCAACAGGTTTAAATTTTGAGGTTCACTACGCTTTGCAAGAGCAACCTCATATTCTGTTAGCCCAGATTGCTCAGAGAACAGCTAGGTCTGTTTTTGTCAAGGCCTGTAAGAATATTGATCGATGTGAAGTGAATAAACCAAAGAAGATAGATAATAATACGATAAATACTCCCATCACTCTACAAACAGCAGGGGTGAACTTTGAAGTATTCCATAAGTTAGTGGACTAT CTCGATATCAATGAGGTCAGATCCAATGATATACACGCTATGTTGAACACATATGGGGTAGAGGCTGCAAGGGCAACCATCATTGGGGAAGTGAAGGGCGTATTCGGTGCTTATGGTATCCATGTTGACATGAGGCATCTGAACTTGATTGCGGATTTCATGACCTTCGACGGCGGTTACCGACCGATGAGCAGGCTAGGGATGGGCCAGTTCAGCACCTCGCCATTTGGTAAGATGACTTTTGAGACGGCAACCAAGTTTATTGTGGAAGCAGCTTCTCATGGAGAGTCTGACACACTGGACGGCCCTTCGGCAAGCGTCTGTCTGGGGAAACCTGTTAAGGTGGGGACGGGTTCCTTTGGCTTGCTGCAGAATTTTTCCCTGGAGCAACCTGTTGCGATGTAAGCATACATGTAGCATCATCAGCCTGTTTGCTTTACTGGATTAGTCCAATTTTGATGGAGGCTGCCATAGAGCAGTAGGAATGTGTTACATATACGGTACTTTTTGCTAGCAAGTGCAGCAAGTTATGTCAGTTCTCAGTTGTGTTTGTGTAGCAGGAAACGAACATGTGAACACTGATACTCCCTTTGGTAGTAGTATGGACATTAGTCTCTGTGTAGACTGTGTGGAGTATCAGGCTGGCAGCAGCAGTAGCAGCATGATCTTGGTTTCTTTGCCA ]
[+] EMBL CB096429 [ TAAACCAAAGAAGATAGATAATAATACGATAAATACTCCCATCACTCTACAAACAGCAGGGGTGAACCTTGAAGTATTCCATAAGTTAGTGGACTATNCTCGATATCAATGAGGTCAGATCCAATGATATACACGCTATGTTGAACACATATGGGGTAGAGGCTGCAAGGGCAACCATCATTGGGGAAGTGAAGGGCCTATTCGGTGCTTATGGTATCCATGTTGACATGAGGCATCTGAACTTGATTGCGGATTTCATGACCTTCGACGGCGGTTACCGACCGATGAGCAGGCTAGGGATGGGCCAGTTCAGCACCTCGCCATTTGGTAAGATGACTTTTGAGACGGCAACCAAGTTTATTGTGGAAGCAGCTTCTCATGGAGAGTCTGACACACTGGACGGCCCTTCGGCAAGCGTCTGTCTGGGGAAACCTGTTAAGGTGGGGACGGGTTCCTTTGGCTTGCTGCAGAATTTTTCCCTGGAGCAACCTGTTGCGATGTAAGCATACATGTAGCATCATCAGCCTGTTTGCTTTACTGGATTAGTCCAATTTTGATGGAGGCTGCCATAGAGCAGTAGGAATGTGNTACATATACGGTACTTTTTGCCAGCAAGTGCAGCAAGGTATGTCAGNTCTCAGTTGTGTTTGTGTAGCAGGAAACGAACATGTGAACACTGATACTNCCTTTGGTAGTAGTATGGACATTAGTCTCTGNGTANAC TGNGGAGTATCAGGCTGGCAGCAGCAGTAGCAGCATGATCTTGGTTTCT ]
[-] EMBL AU174442 [ CAGTAGGAATGTGTTACATATACGGTACTTTTTGCTAGCAAGTGCAGCAAGTTATGTCAGTTCTCAGTTGTGTTTGTGTAGCAGGAAACGAACATGTGAACACTGATACTCCCTTTGGTAGTAGTATGGACATTAGTCTCTGTGTAGACTGTGTGGAGTATCAGGCTGGCAGCAGCAGTAGCAGCATGATCTTGGTTTCTTTGCCATTTTAGATGCATTTCAGCACCCTTGTTTTTTCTGCCTTTAAACCCAAATCCGATAGCCACTTTGCCGTTGCTGTCTGCATGAGGTTAAGATGGCAGCTGAGGGGGAATATATCTAGGACTCCAGCTGCAATATCTTTTCTATAATTGAGTGTGCAAGACAGCATCCTCTGATTCAGGGCCTGTTTAGATCCATATGAGTAGATGGATCTCCTTCTTCT]
consensusID : consensus_10615#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTACATGTAGCATCATCAGCCTGTTTGCTTTACTGGATTAGTCCAATTTTGATGGAGGCTGCCATAGAGCAGTAGGAATGTGTTACATATACCGGTACTTTTTGCTAGCAAGNGCAGCAAGTTATGTCANTTNTCAGTTGGGTTTGTGTAGCAGGAAACGAACATGTGAACACTGATACTCCCTTTGGTAGTAGTATGGACATTAGTCTCTGTGTAGACTGNGTGGAGTATCAGGCTGGCAGCAGCAGTAGCAGCATGATCTTGGTTTCTTTGCCATTTTANATGCATTTCAGCACCCTTGTTTTTTCTGCCTTTAAACCCAAATCCGATAGCCACTTTGCCGTTGCTGTCTGCATGAGGTTAAGATGGCAGCTGAGGGGGAATATATCTAGGACTCCAGCTGCAATATCTTTTCTATAA]
[-] EMBL AU174443 [TTTTTTTTTTTTTTTTTTTTTTTACATGTAGCATCATCAGCCTGTTTGCTTTACTGGATTAGTCCAATTTTGATGGAGGCTGCCATAGAGCAGTAGGAATGTGTTACATATACCGGTACTTTTTGCTAGCAAGNGCAGCAAGTTATGTCANTTNTCAGTTGGGTTTGTGTAGCAGGAAACGAACATGTGAACACTGATACTCCCTTTGGTAGTAGTATGGACATTAGTCTCTGTGTAGACTGNGTGGAGTATCAGGCTGGCAGCAGCAGTAGCAGCATGATCTTGGTTTCTTTGCCATTTTANATGCATTTCAGCACCCTTGTTTTTTCTGCCTTTAAACCCAAATCCGATAGCCACTTTGCCGTTGCTGTCTGCATGAGGTTAAGATGGCAGCTGAGGGGGAATATATCTAGGACTCCAGCTGCAATATCTTTTCTATAA]
consensusID : consensus_10615#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 347 fasta sequence
[AGGGACTGAAGGAGTAGTTGGCTTGCTGCAGAATTTTTCCCTGGAGCAACCTGTTGCGATGTAAGCATACATGTAGCATCATCAGCCTGTTTGCTTTACTGGATTAGTCCAATTTTGATGGAGGCTGCCATAGAGCAGTAGGAATGTGTTACATATACGGTACTTTTTGCTAGCAAGTGCAGCAAGTTATGTCAGTTCTCAGTTGTGTTTGTGTAGCAGGAAACGAACATGTGAACACTGATACTCCCTTTGGTAGTAGTATGGACATTAGTCTCTGTGTAGACTGTGTGGAGTATCAGGCTGGCAGCAGCAGTAGCAGCATGATCTTGGTTTCTTTGCCAAAAAAA]
[-] EMBL CF331682 [AGGGACTGAAGGAGTAGTTGGCTTGCTGCAGAATTTTTCCCTGGAGCAACCTGTTGCGATGTAAGCATACATGTAGCATCATCAGCCTGTTTGCTTTACTGGATTAGTCCAATTTTGATGGAGGCTGCCATAGAGCAGTAGGAATGTGTTACATATACGGTACTTTTTGCTAGCAAGTGCAGCAAGTTATGTCAGTTCTCAGTTGTGTTTGTGTAGCAGGAAACGAACATGTGAACACTGATACTCCCTTTGGTAGTAGTATGGACATTAGTCTCTGTGTAGACTGTGTGGAGTATCAGGCTGGCAGCAGCAGTAGCAGCATGATCTTGGTTTCTTTGCCAAAAAAA]
[+] EMBL CF331681 [ GGGACTGAAGGAGTAGTTGGCTTGCTGCAGAATTTTTCCCTGGAGCAACCTGTTGCGATGTAAGCATACATGTAGCATCATCAGCCTGTTTGCTTTACTGGATTAGTCCAATTTTGATGGAGGCTGCCATAGAGCAGTAGGAATGTGTTACATATACGGTACTTTTTGCTAGCAAGTGCAGCAAGTTATGTCAGTTCTCAGTTGTGTTTGTGTAGCAGGAAACGAACATGTGAACACTGATACTCCCTTTGGTAGTAGTATGGACATTAGTCTCTGTGTAGACTGTGTGGAGTATCAGGCTGGCAGCAGCAGTAGCAGCATGATCTTGGTTTCTTTGCCAAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10615#0 TTAAAAGCTAAGCAAGCAACAGCCAGACTCGAAGATGAAATGAATGAAGCTGAGGATGAA 60
consensus_10615#1 ------------------------------------------------------------
consensus_10615#2 ------------------------------------------------------------
consensus_10615#0 AAGGCGCAAGTGACCATAAAGTTCAAGAAAAACATAAAATGGACTATTCATTATGAATCA 120
consensus_10615#1 ------------------------------------------------------------
consensus_10615#2 ------------------------------------------------------------
consensus_10615#0 ACAGGTTTAAATTTTGAGGTTCACTACGCTTTGCAAGAGCAACCTCATATTCTGTTAGCC 180
consensus_10615#1 ------------------------------------------------------------
consensus_10615#2 ------------------------------------------------------------
consensus_10615#0 CAGATTGCTCAGAGAACAGCTAGGTCTGTTTTTGTCAAGGCCTGTAAGAATATTGATCGA 240
consensus_10615#1 ------------------------------------------------------------
consensus_10615#2 ------------------------------------------------------------
consensus_10615#0 TGTGAAGTGAATAAACCAAAGAAGATAGATAATAATACGATAAATACTCCCATCACTCTA 300
consensus_10615#1 ------------------------------------------------------------
consensus_10615#2 ------------------------------------------------------------
consensus_10615#0 CAAACAGCAGGGGTGAACTTTGAAGTATTCCATAAGTTAGTGGACTATCTCGATATCAAT 360
consensus_10615#1 ------------------------------------------------------------
consensus_10615#2 ------------------------------------------------------------
consensus_10615#0 GAGGTCAGATCCAATGATATACACGCTATGTTGAACACATATGGGGTAGAGGCTGCAAGG 420
consensus_10615#1 ------------------------------------------------------------
consensus_10615#2 ------------------------------------------------------------
consensus_10615#0 GCAACCATCATTGGGGAAGTGAAGGGCGTATTCGGTGCTTATGGTATCCATGTTGACATG 480
consensus_10615#1 ------------------------------------------------------------
consensus_10615#2 ------------------------------------------------------------
consensus_10615#0 AGGCATCTGAACTTGATTGCGGATTTCATGACCTTCGACGGCGGTTACCGACCGATGAGC 540
consensus_10615#1 ------------------------------------------------------------
consensus_10615#2 ------------------------------------------------------------
consensus_10615#0 AGGCTAGGGATGGGCCAGTTCAGCACCTCGCCATTTGGTAAGATGACTTTTGAGACGGCA 600
consensus_10615#1 ------------------------------------------------------------
consensus_10615#2 ------------------------------------------------------------
consensus_10615#0 ACCAAGTTTATTGTGGAAGCAGCTTCTCATGGAGAGTCTGACACACTGGACGGCCCTTCG 660
consensus_10615#1 ------------------------------------------------------------
consensus_10615#2 ------------------------------------------------------------
consensus_10615#0 GCAAGCGTCTGTCTGGGGAAACCTGTTAAGGTGGGGACGGGTTCCTTTGGCTTGCTGCAG 720
consensus_10615#1 ------------------------------------------------------------
consensus_10615#2 -----------------------------AGGGACTGAAGGAGTAGTTGGCTTGCTGCAG 31
consensus_10615#0 AATTTTTCCCTGGAGCAACCTGTTGCGATGTAAGCATACATGTAGCATCATCAGCCTGTT 780
consensus_10615#1 --------------TTTTTTTTTTTTTTTTTTTTTTTACATGTAGCATCATCAGCCTGTT 46
consensus_10615#2 AATTTTTCCCTGGAGCAACCTGTTGCGATGTAAGCATACATGTAGCATCATCAGCCTGTT 91
* ** * * ************************
consensus_10615#0 TGCTTTACTGGATTAGTCCAATTTTGATGGAGGCTGCCATAGAGCAGTAGGAATGTGTTA 840
consensus_10615#1 TGCTTTACTGGATTAGTCCAATTTTGATGGAGGCTGCCATAGAGCAGTAGGAATGTGTTA 106
consensus_10615#2 TGCTTTACTGGATTAGTCCAATTTTGATGGAGGCTGCCATAGAGCAGTAGGAATGTGTTA 151
************************************************************
consensus_10615#0 CATATAC-GGTACTTTTTGCTAGCAAGTGCAGCAAGTTATGTCAGTTCTCAGTTGTGTTT 899
consensus_10615#1 CATATACCGGTACTTTTTGCTAGCAAGNGCAGCAAGTTATGTCANTTNTCAGTTGGGTTT 166
consensus_10615#2 CATATAC-GGTACTTTTTGCTAGCAAGTGCAGCAAGTTATGTCAGTTCTCAGTTGTGTTT 210
******* ******************* **************** ** ******* ****
consensus_10615#0 GTGTAGCAGGAAACGAACATGTGAACACTGATACTCCCTTTGGTAGTAGTATGGACATTA 959
consensus_10615#1 GTGTAGCAGGAAACGAACATGTGAACACTGATACTCCCTTTGGTAGTAGTATGGACATTA 226
consensus_10615#2 GTGTAGCAGGAAACGAACATGTGAACACTGATACTCCCTTTGGTAGTAGTATGGACATTA 270
************************************************************
consensus_10615#0 GTCTCTGTGTAGACTGTGTGGAGTATCAGGCTGGCAGCAGCAGTAGCAGCATGATCTTGG 1019
consensus_10615#1 GTCTCTGTGTAGACTGNGTGGAGTATCAGGCTGGCAGCAGCAGTAGCAGCATGATCTTGG 286
consensus_10615#2 GTCTCTGTGTAGACTGTGTGGAGTATCAGGCTGGCAGCAGCAGTAGCAGCATGATCTTGG 330
**************** *******************************************
consensus_10615#0 TTTCTTTGCCATTTTAGATGCATTTCAGCACCCTTGTTTTTTCTGCCTTTAAACCCAAAT 1079
consensus_10615#1 TTTCTTTGCCATTTTANATGCATTTCAGCACCCTTGTTTTTTCTGCCTTTAAACCCAAAT 346
consensus_10615#2 TTTCTTTGCCAAAAAAA------------------------------------------- 347
*********** *
consensus_10615#0 CCGATAGCCACTTTGCCGTTGCTGTCTGCATGAGGTTAAGATGGCAGCTGAGGGGGAATA 1139
consensus_10615#1 CCGATAGCCACTTTGCCGTTGCTGTCTGCATGAGGTTAAGATGGCAGCTGAGGGGGAATA 406
consensus_10615#2 ------------------------------------------------------------
consensus_10615#0 TATCTAGGACTCCAGCTGCAATATCTTTTCTATAATTGAGTGTGCAAGACAGCATCCTCT 1199
consensus_10615#1 TATCTAGGACTCCAGCTGCAATATCTTTTCTATAA------------------------- 441
consensus_10615#2 ------------------------------------------------------------
consensus_10615#0 GATTCAGGGCCTGTTTAGATCCATATGAGTAGATGGATCTCCTTCTTCT 1248
consensus_10615#1 -------------------------------------------------
consensus_10615#2 -------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||