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Oryza sativa
cluster # 10618 cluster # 10618       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10618#0 length = 1757 sequences # 4  
consensus_10618#1 length = 1434 sequences # 2  
consensus_10618#2 length = 490 sequences # 1  

consensusID : consensus_10618#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1757
fasta sequence
                              [CCCACCACCACCAACCACAGGATCTCTTCCCCCCACCTCCCACAACCCCGGATCCCTCCTCCTCCCCCTTCCCTCGATGCGGCCAGCGTCGCCGCCTCAGGATCCGGCGATCTAGCTGCCCCCGTCGCTGCAACTGCTTGCTGCTGCTGTCTGGTTCTTTCTTGGGGGGGCGCCTCCGGCGAGGAGGAGGAGGAGGAGGAGGAGGAGGTAGATGAGGTTCTGGAGGGACAGCGGCGGGGGCGGCAGCGGCGGAGGCCGGGACCTCAACGGCGGCGGCACCCCCTGCGGCCAGGTGCGCGTGCTCGTCGTCGGCGACTCAGGTGTGGGGAAATCATCATTGGTTCATCTCATTCTGAAAGGCTCTGCAATTGCTCGACCACCCCAAACGATTGGATGCGCAGTTGATGTTAAACATATTACTTATGGAAGTCCTGGAAGTTCTTCTAATAGCATTAATAGCATTAAGGGTGATGCTGAAAGAAACTTTTTTGTTGAGCTCTGGGACGTTTCAGGACACGAGCGCTACAAAGAGTGCCGATCACTTTTTTATTCTCAAATTAATGGTGTCATATTTGTTTATGACCTCTCTCAGAGGAAAACAAAGACAAATTTGAACAAGTGGGCAGTGGAGGTTGCTGAATCAGGGACCTTTTCAGCTCCTCTTGGGTCTGGTGGTCCAGGAGGCCTTCCGGTTCCTTACTTAGTGATTGCGAACAAGGTGGATATTGCTCCAAGAGATGGTAAAAGAGTTAGCAGTGGAAATCTTGTTGATGTTGCTCGTCAATGGGTTGAGAAGCAAGGCCTACTTCCATCCAGTGAAGAACTTCCACTTGCAGAAAGCTTCCCTGGCAATTCTGGTTTGCTCACGGCTGCTAAAGTGGCAAGATATGACAAAGAAGCTTTGGTTAAGTTCTTCCGCATGTTGATAAGGAGAAGATATTTTTCAAACGAGCTTCCTGCTCCTAGCCCATGGTCCCTCACTCCCAGAGAGGATACCATTCTTCCTGTAGAAACAACGAATGATGATGACCTGTTTCAAAGGAAAAGCTACGCTGGCCAGAGTTACAAATACAGTGGCGTTACGCCATTGCCTGCTCAGCGGAATCTAACTCCACCACCCACTCTCTACCCGCAGCAACCAATGTCATCGTCTTCAGAGAACTACAGATATCACAGGTTCTCCTCATCGGCAATTCCTGACGCAAGCAGTAGTAGAACGAACCGAGCAGATATCAATATATGATCCAAGAGCTCGCATGCATTACCACTTCCAATGTGAAAAATCTCATGCTGCTATGGTATTTTACTTGATCCCACTTTGTGTAATCCTGATATGCTCACCTGTCTTGCCTTGAAATGTGCATGTAGTCGAGGTGCTCTTTTTGATTGTCCTCATCTTGGCATACCACTAATGATCAATTCTTTTATATCTTCTATATTGTTGAATTGTGTTTTGTAATGAAGATCACACATGTTTATAAATTAATTAATAGAAGCATTTAGGGTGGCCGGAGTGTGTGCTGTTGTCAGTGTAACACCGATTTATCATTTTCGATCAAGCTGAGTTCTTGCCAACTCCCTCAAAAGTCATCTGTAAGGGCGATTTCTGGGCTGCAAATCAACGTTGTTTGTCAGTACTGTGTTCGGTCTTCAAAGTTCAAATGTGTTCATCCCTTGTAAATTTTGTTTGGGAGGTACTTTCTCCGTTTCACAATGTAAGTCATTCTAGCATTACGGGCATTTATATTGAGATTCCT]

[+] EMBL AK068217             [CCCACCACCACCAACCACAGGATCTCTTCCCCCCACCTCCCACAACCCCGGATCCCTCCTCCTCCCCCTTCCCTCGATGCGGCCAGCGTCGCCGCCTCAGGATCCGGCGATCTAGCTGCCCCCGTCGCTGCAACTGCTTGCTGCTGCTGTCTGGTTCTTTCTTGGGGGGGCGCCTCCGGCGAGGAGGAGGAGGAGGAGGAGGAGGAGGTAGATGAGGTTCTGGAGGGACAGCGGCGGGGGCGGCAGCGGCGGAGGCCGGGACCTCAACGGCGGCGGCACCCCCTGCGGCCAGGTGCGCGTGCTCGTCGTCGGCGACTCAGGTGTGGGGAAATCATCATTGGTTCATCTCATTCTGAAAGGCTCTGCAATTGCTCGACCACCCCAAACGATTGGATGCGCAGTTGATGTTAAACATATTACTTATGGAAGTCCTGGAAGTTCTTCTAATAGCATTAATAGCATTAAGGGTGATGCTGAAAGAAACTTTTTTGTTGAGCTCTGGGACGTTTCAGGACACGAGCGCTACAAAGAGTGCCGATCACTTTTTTATTCTCAAATTAATGGTGTCATATTTGTTTATGACCTCTCTCAGAGGAAAACAAAGACAAATTTGAACAAGTGGGCAGTGGAGGTTGCTGAATCAGGGACCTTTTCAGCTCCTCTTGGGTCTGGTGGTCCAGGAGGCCTTCCGGTTCCTTACTTAGTGATTGCGAACAAGGTGGATATTGCTCCAAGAGATGGTAAAAGAGTTAGCAGTGGAAATCTTGTTGATGTTGCTCGTCAATGGGTTGAGAAGCAAGGCCTACTTCCATCCAGTGAAGAACTTCCACTTGCAGAAAGCTTCCCTGGCAATTCTGGTTTGCTCACGGCTGCTAAAGTGGCAAGATATGACAAAGAAGCTTTGGTTAAGTTCTTCCGCATGTTGATAAGGAGAAGATATTTTTCAAACGAGCTTCCTGCTCCTAGCCCATGGTCCCTCACTCCCAGAGAGGATACCATTCTTCCTGTAGAAACAACGAATGATGATGACCTGTTTCAAAGGAAAAGCTACGCTGGCCAGAGTTACAAATACAGTGGCGTTACGCCATTGCCTGCTCAGCGGAATCTAACTCCACCACCCACTCTCTACCCGCAGCAACCAATGTCATCGTCTTCAGAGAACTACAGATATCACAGGTTCTCCTCATCGGCAATTCCTGACGCAAGCAGTAGTAGAACGAACCGAGCAGATATCAATATATGATCCAAGAGCTCGCATGCATTACCACTTCCAATGTGAAAAATCTCATGCTGCTATGGTATTTTACTTGATCCCACTTTGTGTAATCCTGATATGCTCACCTGTCTTGCCTTGAAATGTGCATGTAGTCGAGGTGCTCTTTTTGATTGTCCTCATCTTGGCATACCACTAATGATCAATTCTTTTATATCTTCTATATTGTTGAATTGTGTTTTGTAATGAAGATCACACATGTTTATAAATTAATTAATAGAAGCATTTAGGGTGGCCGGAGTGTGTGCT                                                                                                                                                                                                                                           ]
[+] EMBL CA998124             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GGACCTTTTCAGCTCCTCTTGGGTCTGGTGGTCCAGGAGGCCTTCCGGTTCCTTACTTAGTGATTGCGAACAAGGTGGATATTGCTCCAAGAGATGGTAAAAGAGTTAGCAGTGGAAATCTTGTTGATGTTGCTCGTCAATGGGTTGAGAAGCAAGGCCTACTTCCATCCAGTGAAGAACTTCCACTTGCAGAAAGCTTCCCTGGCAATTCTGGTTTGCTCACGGCTGCTAAAGTGGCAAGATATGACAAAGAAGCTTTGGTTAAGTTCTTCCGCATGTTGATAAGGAGAAGATATTTTTCAAACGAGCTTCCTGCTCCTAGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB649045             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TCCCTGCCTTTTCAGGTTTGCTCACGGCTGCTAAAGTGGCAAGATATGACAAAGAAGCTTTGGTTAAGTTCTTCCGCATGCCGATAAGGAGAAGATATTTTTCAAACGAGCTTCCTGCTCCTAGCCCATGGTCCCTCACTCCCAGAGAGGATACCATTCTTCCTGTAGAAACAACGAATGATGATGACCTGTTTCAAAGGAAAAGCTACGCTGGCCAGAGTTACAAATACAGTGGCGTTACGCCATTGCCTGCTCAGCGGAATCTAACTCCACCACCCACTCTCTACCCGCAGCAACCAATGTCATCGTCTTCAGAGAACTACAGATATCACAGGTTCTCCTCATCGGCAATTCCTGACGCAAGCAGTAGTAGAACGAACCGAGCAGATATCAATATATGATCCAAGAGCTCGCATGCATTACCACTTCCAATGTGAAAAATCTCATGCTGCTATGGTATTTTACTTGATCCCACTTTGTGTAATCCTGATATGCTCACCTGTCTTGCCTTGAAATGTGCATGTAGTCGAGGTGCTCTTTTTGATTGTCCTCATCTTGGCATACCACTAATGATCAATTCTTTTATATCTTCTATATTGTTGAATTGTGTTTTGTAATGAAGATCACACATGTTTATAAATTAATTAATAGAAGCATTTACGGTGGCCGGAGTGTGTGCTGTTGTCAGTGTAACACCGATTTATCATTTTCGATCAAGCTGAGTTCTTGCCAACTCCCTCAAAAGTCATCTGTAAGGGCGATTTCTGGGCTGCAAATCA                                                                                                                                        ]
[-] EMBL CB649046             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    gCCTGTTTCAAAGGAAAAGCTACGCTGGCCAGAGTTACAAATACAGTGGCGTTACGCCATTGCCTGCTCAGCGGAATCTAACTCCACCACCCACTCTTTACCCGCAGCAACCAATGTCATCGTCTTCAGAGAACTACAGATATCACAGGTTCTCCTCATCGGCAATTCCTGACGCAAGCAGTAGTAGAACGAACCGAGCAGATATCAATATATGATCCAAGAGCTCGCATGCATTACCACTTCCAATGTGAAAAATCTCATGCTGCTATGGTATTTTACTTGATCCCACTTTGTGTAATCCTGATATGCTCACCTGTCTTGCCTTGAAATGTGCATGTAGTCGAGGTGCTCTTTTTGATTGTCCTCATCTTGGCATACCACTAATGATCAATTCTTTTATATCTTCTATATTGTTGAATTGTGTTTTGTAATGAAGATCACACATGTTTATAAATTAATTAATAGAAGCATTTAGGGTGGCCGGAGTGTGTGCTGTTGTCAGTGTAACACCGATTTATCATTTTCGATCAAGCTGAGTTCTTGCCAACTCCCTCAAAAGTCATCTGTAAGGGCGATTTCTGGGCTGCAAATCAACGTTGTTTGTCAGTACTGTGTTCGGTCTTCAAAGTTCAAATGTGTTCATCCCTTGTAAATTTTGTTTGGGAGGTACTTTCTCCGTTTCACAATGTAAGTCATTCTAGCATTACGGGCATTTATATTGAGATTCCT]


>consensus_10618#0 CCCACCACCACCAACCACAGGATCTCTTCCCCCCACCTCCCACAACCCCGGATCCCTCCT CCTCCCCCTTCCCTCGATGCGGCCAGCGTCGCCGCCTCAGGATCCGGCGATCTAGCTGCC CCCGTCGCTGCAACTGCTTGCTGCTGCTGTCTGGTTCTTTCTTGGGGGGGCGCCTCCGGC GAGGAGGAGGAGGAGGAGGAGGAGGAGGTAGATGAGGTTCTGGAGGGACAGCGGCGGGGG CGGCAGCGGCGGAGGCCGGGACCTCAACGGCGGCGGCACCCCCTGCGGCCAGGTGCGCGT GCTCGTCGTCGGCGACTCAGGTGTGGGGAAATCATCATTGGTTCATCTCATTCTGAAAGG CTCTGCAATTGCTCGACCACCCCAAACGATTGGATGCGCAGTTGATGTTAAACATATTAC TTATGGAAGTCCTGGAAGTTCTTCTAATAGCATTAATAGCATTAAGGGTGATGCTGAAAG AAACTTTTTTGTTGAGCTCTGGGACGTTTCAGGACACGAGCGCTACAAAGAGTGCCGATC ACTTTTTTATTCTCAAATTAATGGTGTCATATTTGTTTATGACCTCTCTCAGAGGAAAAC AAAGACAAATTTGAACAAGTGGGCAGTGGAGGTTGCTGAATCAGGGACCTTTTCAGCTCC TCTTGGGTCTGGTGGTCCAGGAGGCCTTCCGGTTCCTTACTTAGTGATTGCGAACAAGGT GGATATTGCTCCAAGAGATGGTAAAAGAGTTAGCAGTGGAAATCTTGTTGATGTTGCTCG TCAATGGGTTGAGAAGCAAGGCCTACTTCCATCCAGTGAAGAACTTCCACTTGCAGAAAG CTTCCCTGGCAATTCTGGTTTGCTCACGGCTGCTAAAGTGGCAAGATATGACAAAGAAGC TTTGGTTAAGTTCTTCCGCATGTTGATAAGGAGAAGATATTTTTCAAACGAGCTTCCTGC TCCTAGCCCATGGTCCCTCACTCCCAGAGAGGATACCATTCTTCCTGTAGAAACAACGAA TGATGATGACCTGTTTCAAAGGAAAAGCTACGCTGGCCAGAGTTACAAATACAGTGGCGT TACGCCATTGCCTGCTCAGCGGAATCTAACTCCACCACCCACTCTCTACCCGCAGCAACC AATGTCATCGTCTTCAGAGAACTACAGATATCACAGGTTCTCCTCATCGGCAATTCCTGA CGCAAGCAGTAGTAGAACGAACCGAGCAGATATCAATATATGATCCAAGAGCTCGCATGC ATTACCACTTCCAATGTGAAAAATCTCATGCTGCTATGGTATTTTACTTGATCCCACTTT GTGTAATCCTGATATGCTCACCTGTCTTGCCTTGAAATGTGCATGTAGTCGAGGTGCTCT TTTTGATTGTCCTCATCTTGGCATACCACTAATGATCAATTCTTTTATATCTTCTATATT GTTGAATTGTGTTTTGTAATGAAGATCACACATGTTTATAAATTAATTAATAGAAGCATT TAGGGTGGCCGGAGTGTGTGCTGTTGTCAGTGTAACACCGATTTATCATTTTCGATCAAG CTGAGTTCTTGCCAACTCCCTCAAAAGTCATCTGTAAGGGCGATTTCTGGGCTGCAAATC AACGTTGTTTGTCAGTACTGTGTTCGGTCTTCAAAGTTCAAATGTGTTCATCCCTTGTAA ATTTTGTTTGGGAGGTACTTTCTCCGTTTCACAATGTAAGTCATTCTAGCATTACGGGCA TTTATATTGAGATTCCT



consensusID : consensus_10618#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1434
fasta sequence
                              [CCCCTTTCCCGCCGCCCCCGCCAGGGGCGGATCGGGTTGCGCCTGCGGCCTACATGTGTCGGTGGGTTCTTCTGGTCCGGTGATTCCTCCAGCCTCTCTGTTCGTGCTTGCCGTCGCCGTCGCCGACGCCCAATTCGGGGGCGGTGCGGGAGGCCTGCGATGTTTTGGAAGGACAGCGGCGGACGGAGCAGCGGCGGCGGCGGCGGGCTGGAGCAGAACGGCGTGGGCCCCTTCGGCCAAGTGCGCGTCCTCGTCGTCGGCGATTCAGGTGTTGGGAAATCCTCTTTGGTGCATCTCATTTTAAAGGGTTCTGCTATTGCTCGACCTGCCCAGACAGTAGGATGTGCGGTTGGCGTTAAACATATTACTTATGGAAGTGCAGGCGGTTCTTCTAATAACATCATCAGCGACGTTCAAAGGAACTTCTTTGTTGAGCTTTGGGATGTTTCAGGACATGAACGCTACAGAACATGCCGTTCAATTTTCTATACACAAATTAATGGTGTCATATTTGTTTATGACCTCTCTCAGAGGAAGACCAAAACAAATTTGAATAAATGGGCAGTTGAAGTTGCTGAAACTGGCACCTTTTCTGCTCCACTCGGATCTGGTGGACCAGGTGGGCTTCCAGTGCCTTACCTTGTAATTGCTAATAAAGTGGATCTTGTTCCGAGAGATGGTTCTAGAGTTAGCAGTGGAAGTCTTGTTGATTTTGCTCGTCAGTGGGTTGAGAAACAGGGCCTGCTTCCTAGTAGTGAAGAACTTCCACTCACAGATAGCTTTCCTGGGAACTCTGGTCTCCTCTCGGCTGCCAAAGAAGCAAGATATGACAAAGAAGCCGTGATCAAGTTTTTCCGCATGTTGATTAGGAGAAGATTTTTCTCAAATGAGCCTGCTGCCCCGAGTCCCTGGTCTCTCA--CTC-CG-AGAGAAGATAGCATCCTTCCTGTAGAGACTCTCAAAGACGAAGTAGATAGCTTTCAAAGGAAAAGCGGCGAGGACTTCATGTACAAGGGAGTAAACCCGCTGCCTGCACAGAGGAACCTCGCATCGCCACCAGATCTCAGTCCACAGTAACCGGTGTTCTCTTTAGATAACTACAGATATCACAGATACTCCTCGCCGTCGCTTCCTGATGTGAGCAGCAGTAGAACAAGCCGAGAGGATATCGATGTATAGTACAGATTACACAGGCCACCACAGTAGTACGTCGAACGCCGACGTGGGAGCATATGCTGTGCCTTGACGTTGGATTCCATAATACCTTGCTTGCAGCACAGCGAAGGTACCAAATACTATTTGTCGTCACCCCTAATCTTTTATCTGATAGCAGCGAGATTATTGTTTTATTTGGTTTTCTTTAAATATGTATATTCATTTAACAGACATGAGATTGATGTGAGTAAAATATGTCAAATATAGATTTTTTTCCAAAAA]

[+] EMBL AK071529             [CCCCTTTCCCGCCGCCCCCGCCAGGGGCGGATCGGGTTGCGCCTGCGGCCTACATGTGTCGGTGGGTTCTTCTGGTCCGGTGATTCCTCCAGCCTCTCTGTTCGTGCTTGCCGTCGCCGTCGCCGACGCCCAATTCGGGGGCGGTGCGGGAGGCCTGCGATGTTTTGGAAGGACAGCGGCGGACGGAGCAGCGGCGGCGGCGGCGGGCTGGAGCAGAACGGCGTGGGCCCCTTCGGCCAAGTGCGCGTCCTCGTCGTCGGCGATTCAGGTGTTGGGAAATCCTCTTTGGTGCATCTCATTTTAAAGGGTTCTGCTATTGCTCGACCTGCCCAGACAGTAGGATGTGCGGTTGGCGTTAAACATATTACTTATGGAAGTGCAGGCGGTTCTTCTAATAACATCATCAGCGACGTTCAAAGGAACTTCTTTGTTGAGCTTTGGGATGTTTCAGGACATGAACGCTACAGAACATGCCGTTCAATTTTCTATACACAAATTAATGGTGTCATATTTGTTTATGACCTCTCTCAGAGGAAGACCAAAACAAATTTGAATAAATGGGCAGTTGAAGTTGCTGAAACTGGCACCTTTTCTGCTCCACTCGGATCTGGTGGACCAGGTGGGCTTCCAGTGCCTTACCTTGTAATTGCTAATAAAGTGGATCTTGTTCCGAGAGATGGTTCTAGAGTTAGCAGTGGAAGTCTTGTTGATTTTGCTCGTCAGTGGGTTGAGAAACAGGGCCTGCTTCCTAGTAGTGAAGAACTTCCACTCACAGATAGCTTTCCTGGGAACTCTGGTCTCCTCTCGGCTGCCAAAGAAGCAAGATATGACAAAGAAGCCGTGATCAAGTTTTTCCGCATGTTGATTAGGAGAAGATTTTTCTCAAATGAGCCTGCTGCCCCGAGTCCCTGGTCTCTCA  CTC CG AGAGAAGATAGCATCCTTCCTGTAGAGACTCTCAAAGACGAAGTAGATAGCTTTCAAAGGAAAAGCGGCGAGGACTTCATGTACAAGGGAGTAAACCCGCTGCCTGCACAGAGGAACCTCGCATCGCCACCAGATCTCAGTCCACAGTAACCGGTGTTCTCTTTAGATAACTACAGATATCACAGATACTCCTCGCCGTCGCTTCCTGATGTGAGCAGCAGTAGAACAAGCCGAGAGGATATCGATGTATAGTACAGATTACACAGGCCACCACAGTAGTACGTCGAACGCCGACGTGGGAGCATATGCTGTGCCTTGACGTTGGATTCCATAATACCTTGCTTGCAGCACAGCGAAGGTACCAAATACTATTTGTCGTCACCCCTAATCTTTTATCTGATAGCAGCGAGATTATTGTTTTATTTGGTTTTCTTTAAATATGTATATTCATTTAACAGACATGAGATTGATGTGAGTAAAATATGTCAAATATAG               ]
[+] EMBL BI813155             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CTCTCAATCTCGCGAAGAGAAGATAGCAT CTTCCTGTAGAGACTCTCAAAGACGAAGTTGATAGCTTTCAAAGGAAAA CGGCGAGGACTTCATGTACAAGGGAGTAAACCCGCTGCCTGCACAGAGGAACCTCGCATCGCCACCAGATCTCAGTCCACAGCAACCGGTGTTCTCTTTAGATAACTACAGATATAACAGATACTCCTC CCGTCGCTTCCTGATGTGAGCA CAGTAGAACAAGCCGAGAGGATATCGATGTATAGTACAGATTACACAGGCCACCACAGTAGTACGTCGAACGCCGACGTGGGAGCATATGCTGTGCCTTGACGTTGGATTCCATAATACCTTGCTTGCAGCACAGCGAAGGTACCCAATACTATTTGTCGTCACCCCTAATCTTTTATCTGATAGCAGCGAGATTATTGTTTTATTTGGTTTTCTTTAAATATGTATATTCATTTAACAGACATGAGATTGATGTGAGTAAAATGTGTCAAATATAGATTTTTTTCCAAAAA]


>consensus_10618#1 CCCCTTTCCCGCCGCCCCCGCCAGGGGCGGATCGGGTTGCGCCTGCGGCCTACATGTGTC GGTGGGTTCTTCTGGTCCGGTGATTCCTCCAGCCTCTCTGTTCGTGCTTGCCGTCGCCGT CGCCGACGCCCAATTCGGGGGCGGTGCGGGAGGCCTGCGATGTTTTGGAAGGACAGCGGC GGACGGAGCAGCGGCGGCGGCGGCGGGCTGGAGCAGAACGGCGTGGGCCCCTTCGGCCAA GTGCGCGTCCTCGTCGTCGGCGATTCAGGTGTTGGGAAATCCTCTTTGGTGCATCTCATT TTAAAGGGTTCTGCTATTGCTCGACCTGCCCAGACAGTAGGATGTGCGGTTGGCGTTAAA CATATTACTTATGGAAGTGCAGGCGGTTCTTCTAATAACATCATCAGCGACGTTCAAAGG AACTTCTTTGTTGAGCTTTGGGATGTTTCAGGACATGAACGCTACAGAACATGCCGTTCA ATTTTCTATACACAAATTAATGGTGTCATATTTGTTTATGACCTCTCTCAGAGGAAGACC AAAACAAATTTGAATAAATGGGCAGTTGAAGTTGCTGAAACTGGCACCTTTTCTGCTCCA CTCGGATCTGGTGGACCAGGTGGGCTTCCAGTGCCTTACCTTGTAATTGCTAATAAAGTG GATCTTGTTCCGAGAGATGGTTCTAGAGTTAGCAGTGGAAGTCTTGTTGATTTTGCTCGT CAGTGGGTTGAGAAACAGGGCCTGCTTCCTAGTAGTGAAGAACTTCCACTCACAGATAGC TTTCCTGGGAACTCTGGTCTCCTCTCGGCTGCCAAAGAAGCAAGATATGACAAAGAAGCC GTGATCAAGTTTTTCCGCATGTTGATTAGGAGAAGATTTTTCTCAAATGAGCCTGCTGCC CCGAGTCCCTGGTCTCTCACTCCGAGAGAAGATAGCATCCTTCCTGTAGAGACTCTCAAA GACGAAGTAGATAGCTTTCAAAGGAAAAGCGGCGAGGACTTCATGTACAAGGGAGTAAAC CCGCTGCCTGCACAGAGGAACCTCGCATCGCCACCAGATCTCAGTCCACAGTAACCGGTG TTCTCTTTAGATAACTACAGATATCACAGATACTCCTCGCCGTCGCTTCCTGATGTGAGC AGCAGTAGAACAAGCCGAGAGGATATCGATGTATAGTACAGATTACACAGGCCACCACAG TAGTACGTCGAACGCCGACGTGGGAGCATATGCTGTGCCTTGACGTTGGATTCCATAATA CCTTGCTTGCAGCACAGCGAAGGTACCAAATACTATTTGTCGTCACCCCTAATCTTTTAT CTGATAGCAGCGAGATTATTGTTTTATTTGGTTTTCTTTAAATATGTATATTCATTTAAC AGACATGAGATTGATGTGAGTAAAATATGTCAAATATAGATTTTTTTCCAAAAA



consensusID : consensus_10618#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 490
fasta sequence
                              [GAAAAAAAATCTATATTGACACATTTTACTCACATCAATCTCATGTCTGTTAAATGAATATACATATTTAAAGAAAACCAAATAAAACAATAACTCTCGCTGCTATCANGATAAAAGATTACGGGGTGACCGACAAATAGTCACTTTGGTACCTTCGCCTGTGCTGCAAGCAAGGGTATTATGGGATTCCAACCGTCAAGGGCACAGCATATTGCTCCCACNGTCGGCNGTTCGACGTTACTACNTGTGGTGGCCTNGTGTAATCTGGTACTANTTACATCGATATCNCTCTTCGGCTATGTTCTACGNTGCTGCTCACATTTCAGGAAGCAGACAGGCGAGGAAGTATCTGGTTATATCNTTGTAGTTATTCTAAAANGAGAACACCGGTTGCTTGTGGACTGGAGATACTGGTGGCAGATGCGAAGGTTCCTTCTGTAGCAAGGCAGCGAGGTTTACTCNCCTTGTACATTGAAGTCCTCGCNCGCTT]

[+] EMBL BU672863             [GAAAAAAAATCTATATTGACACATTTTACTCACATCAATCTCATGTCTGTTAAATGAATATACATATTTAAAGAAAACCAAATAAAACAATAACTCTCGCTGCTATCANGATAAAAGATTACGGGGTGACCGACAAATAGTCACTTTGGTACCTTCGCCTGTGCTGCAAGCAAGGGTATTATGGGATTCCAACCGTCAAGGGCACAGCATATTGCTCCCACNGTCGGCNGTTCGACGTTACTACNTGTGGTGGCCTNGTGTAATCTGGTACTANTTACATCGATATCNCTCTTCGGCTATGTTCTACGNTGCTGCTCACATTTCAGGAAGCAGACAGGCGAGGAAGTATCTGGTTATATCNTTGTAGTTATTCTAAAANGAGAACACCGGTTGCTTGTGGACTGGAGATACTGGTGGCAGATGCGAAGGTTCCTTCTGTAGCAAGGCAGCGAGGTTTACTCNCCTTGTACATTGAAGTCCTCGCNCGCTT]


>consensus_10618#2 GAAAAAAAATCTATATTGACACATTTTACTCACATCAATCTCATGTCTGTTAAATGAATA TACATATTTAAAGAAAACCAAATAAAACAATAACTCTCGCTGCTATCANGATAAAAGATT ACGGGGTGACCGACAAATAGTCACTTTGGTACCTTCGCCTGTGCTGCAAGCAAGGGTATT ATGGGATTCCAACCGTCAAGGGCACAGCATATTGCTCCCACNGTCGGCNGTTCGACGTTA CTACNTGTGGTGGCCTNGTGTAATCTGGTACTANTTACATCGATATCNCTCTTCGGCTAT GTTCTACGNTGCTGCTCACATTTCAGGAAGCAGACAGGCGAGGAAGTATCTGGTTATATC NTTGTAGTTATTCTAAAANGAGAACACCGGTTGCTTGTGGACTGGAGATACTGGTGGCAG ATGCGAAGGTTCCTTCTGTAGCAAGGCAGCGAGGTTTACTCNCCTTGTACATTGAAGTCC TCGCNCGCTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10618#0      CCCACCACCACCAACCACAGGATCTCTTCCCCCCACCTCCCACAACCCCGGATCCCTCCT 60
consensus_10618#1      ----------------------------------------------------CCCCTTTC 8
consensus_10618#2      ------------------------------------------------------------
                                                                                   

consensus_10618#0      CCTCCCCCTTCCCTCGATGCGGCCAGCGTCGCCGCCTCAGGATCCGGCGATCTAGCTGCC 120
consensus_10618#1      CCGCCGCCCCCGCCAGGGGCGGATCGGGTTGC-GCCTGCGGCCTACATGTGTCGGTGGGT 67
consensus_10618#2      ------------------------------------------------------------
                                                                                   

consensus_10618#0      CCCGTCGCTGCAACTGCTTGCTGCTGCTGTCTGGTTCTTTCTTGGGGGGGCGCCTCCGGC 180
consensus_10618#1      TCTTCTGGTCCGG-TGATTCCTCCAGCCTCTCTGTTCGTGCTTGCCGT--CGCCGTCGCC 124
consensus_10618#2      ------------------------------------------------------------
                                                                                   

consensus_10618#0      GAGGAGGAGGA-GGAGGAGGAGGAGGAGGTAGATGAGGTTCTGGAGGGACAGCGGCGGGG 239
consensus_10618#1      GACGCCCAATTCGGGGGCGGTGCGGGAGGCCTGCGATGTTTTGGAAGGACAGCGGCGGAC 184
consensus_10618#2      ------------------------------------------------------------
                                                                                   

consensus_10618#0      GCGGCAGCGGCGGAGGCCG-GGACCTCAACGG--CGGCGGCACCCCCTGCGGCCAGGTGC 296
consensus_10618#1      GGAGCAGCGGCGGCGGCGGCGGGCTGGAGCAGAACGGCGTGGGCCCCTTCGGCCAAGTGC 244
consensus_10618#2      ------------------------------------------------------------
                                                                                   

consensus_10618#0      GCGTGCTCGTCGTCGGCGACTCAGGTGTGGGGAAATCATCATTGGTTCATCTCATTCTGA 356
consensus_10618#1      GCGTCCTCGTCGTCGGCGATTCAGGTGTTGGGAAATCCTCTTTGGTGCATCTCATTTTAA 304
consensus_10618#2      --------------------------GAAAAAAAATCTATATTGACACATTTTACTCACA 34
                                                 *     *****    ***   *** * * *   *

consensus_10618#0      AAGGCTCTGCAATTGCTCGACCACCCCAAACGATTGGATGCGCAGTTGATGTTAAACATA 416
consensus_10618#1      AGGGTTCTGCTATTGCTCGACCTGCCCAGACAGTAGGATGTGCGGTTGGCGTTAAACATA 364
consensus_10618#2      TCAATCTCATGTCTGTTAAATGAATATACATATTTAAA---GAAAACCAAATAAAACA-A 90
                                    ** *  *       * *   *   *   *         * ***** *

consensus_10618#0      TTACTTATGGAAGTCCTGGAAGTTCTTCTAATAGCATTAATAGCATTAAGGGTGATGCTG 476
consensus_10618#1      TTACTTATGGAAGTGCAGGCGGTTCTTCTAATAACATCATCAGC---------GACGTTC 415
consensus_10618#2      TAACTCTCGCTGCTATCANGATAAAAGATTACGGGGTGACCGACA--AATAGTCACTTTG 148
                       * ***   *    *              * *     * *    *          *   * 

consensus_10618#0      AAAGAAACTTTTTTGTTGAGCTCTGGGACGTTTCAGGACACGAGCGCTACAAAGAGTGCC 536
consensus_10618#1      AAAGGAACTTCTTTGTTGAGCTTTGGGATGTTTCAGGACATGAACGCTACAGAACATGCC 475
consensus_10618#2      GTACCTTCGCCTGTGCTGCAAGCAAGGGTATTATGGGATTCCAACCGTCAAGGGCACAGC 208
                         *    *   * ** **       **   **   ***    * *  *  *        *

consensus_10618#0      GATCACTTTTT--TATTCTCAAATTAATGGTGTCATATTTGTTTATGACCTCTCTCAGAG 594
consensus_10618#1      GTTCAATTTTC--TATACACAAATTAATGGTGTCATATTTGTTTATGACCTCTCTCAGAG 533
consensus_10618#2      ATATTGCTCCCACNGTCGGCNGTTCGACGTTACTACNTGTG---GTGGCCTNGTGTAATC 265
                              *       *   *   *  * * *   *  * **    ** ***     *   

consensus_10618#0      GAAAACAAAGACAAATTTGAACAAGTGGGCAGTGGAGGTTGCTGAATCAGGGACCTTTTC 654
consensus_10618#1      GAAGACCAAAACAAATTTGAATAAATGGGCAGTTGAAGTTGCTGAAACTGGCACCTTTTC 593
consensus_10618#2      TGGTACTANT-TACATCGATATCNCTCTTCGGCTATGTTCTACGNTGCTGCTCACATTTC 324
                           ** *    * **    *    *   * *      *    *   * *    * ****

consensus_10618#0      AGCTCCTCTTGGGTCTGGTGGTCCAGGAGGCCTTCCGGTTCCTTACTTAGTGATTGCGA- 713
consensus_10618#1      TGCTCCACTCGGATCTGGTGGACCAGGTGGGCTTCCAGTGCCTTACCTTGTAATTGCTA- 652
consensus_10618#2      AG--------GAAGCAGACAGGCGAGGAAG-TATCTGGTTATAT-CNTTGTAGTTATTCT 374
                        *        *   * *   * * ***  *   **  **    * * * **  **     

consensus_10618#0      ACAAGGTGGATATTGCTCCAAGAGATGGTAAAAGAGTTAGCAGTGGAAATCTTGTTGATG 773
consensus_10618#1      ATAAAGTGGATCTTGTTCCGAGAGATGGTTCTAGAGTTAGCAGTGGAAGTCTTGTTGATT 712
consensus_10618#2      AAAANGAGAACACCGGTT--GCTTGTGG-ACTGGAGATACTGGTGGCAGATGCGAAGGTT 431
                       * ** * * *    * *        ***     *** **   **** *     *  * * 

consensus_10618#0      TTGCTCGTCAATGGGTTGAGAAGCAAGGCCTACT-TCCATCCAGTGAAGAACTTCCACTT 832
consensus_10618#1      TTGCTCGTCAGTGGGTTGAGAAACAGGGCCTGCT-TCCTAGTAGTGAAGAACTTCCACTC 771
consensus_10618#2      CCTTCTGT-----AGCAAGGCAGCGAGGTTTACTCNCCTTGTACATTGAAGTCCTCGCNC 486
                             **      *    * * *  **  * **  **    *      *     * *  

consensus_10618#0      GCAGAAAGCTTCCCTGGCAATTCTGGTTTGCTCACGGCTGCTAAAGTGGCAAGATATGAC 892
consensus_10618#1      ACAGATAGCTTTCCTGGGAACTCTGGTCTCCTCTCGGCTGCCAAAGAAGCAAGATATGAC 831
consensus_10618#2      GCTT-------------------------------------------------------- 490
                        *                                                          

consensus_10618#0      AAAGAAGCTTTGGTTAAGTTCTTCCGCATGTTGATAAGGAGAAGATATTTTTCAAACGAG 952
consensus_10618#1      AAAGAAGCCGTGATCAAGTTTTTCCGCATGTTGATTAGGAGAAGATTTTTCTCAAATGAG 891
consensus_10618#2      ------------------------------------------------------------
                                                                                   

consensus_10618#0      CTTCCTGCTCCTAGCCCATGGTCCCTCACTCCCAGAGAGGATACCATTCTTCCTGTAGAA 1012
consensus_10618#1      CCTGCTGCCCCGAGTCCCTGGTCTCTCACTCCGAGAGAAGATAGCATCCTTCCTGTAGAG 951
consensus_10618#2      ------------------------------------------------------------
                                                                                   

consensus_10618#0      ACAACGAATGATGATG---ACCTGTTTCAAAGGAAAAGCTACGCTGGCCAGAGTTACAAA 1069
consensus_10618#1      ACTCTCAAAGACGAAGTAGATAGCTTTCAAAGGAAAAGC------GGCGAGGACTTCATG 1005
consensus_10618#2      ------------------------------------------------------------
                                                                                   

consensus_10618#0      TACAGTGGCGTTACGCCATTGCCTGCTCAGCGGAATCTAACTCCACCACCCACTCTCTAC 1129
consensus_10618#1      TACAAGGGAGTAAACCCGCTGCCTGCACAGAGGAACCTCGCATCGCCACCAGATCTCAGT 1065
consensus_10618#2      ------------------------------------------------------------
                                                                                   

consensus_10618#0      CCGCAGCAACCAATGTCATCGTCTTCAGAGAACTACAGATATCACAGGTTCTCCTCATCG 1189
consensus_10618#1      CCACAGTAACCGGTGTTCTC---TTTAGATAACTACAGATATCACAGATACTCCTCGCCG 1122
consensus_10618#2      ------------------------------------------------------------
                                                                                   

consensus_10618#0      GCAATTCCTGACGCAAGCAGTAGTAGAACGAACCGAGCAGATATCAATATATGATCCAAG 1249
consensus_10618#1      TCGCTTCCTGATGTGAGCAGCAGTAGAACAAGCCGAGAGGATATCGATGTATAGT---AC 1179
consensus_10618#2      ------------------------------------------------------------
                                                                                   

consensus_10618#0      AGCTCGCATGCATTACCACTTCCAATGTGAAAAATCTCATGCTGCTATGGTATTTTACTT 1309
consensus_10618#1      AGATTACACAGGCCACCACA------GTAGTACGTCGAACGCCGACGTGGGAGCATATGC 1233
consensus_10618#2      ------------------------------------------------------------
                                                                                   

consensus_10618#0      GATCCCACTTTGTGTAATCCTGATATGCTCACCTGTCTTGCCTTGAAATGTGCATGTAGT 1369
consensus_10618#1      TGTGCCTTGACGTTGGATTCCATAAT----ACCTTGCTTGCA--GCACAGCGAAGGTA-- 1285
consensus_10618#2      ------------------------------------------------------------
                                                                                   

consensus_10618#0      CGAGGTGCTCTTTTTGATTGTCCTCATCTTGGCATACCACTAATGATCAATTCTTTTATA 1429
consensus_10618#1      CCAAATACTATTTGTCGTCACCCCTAATCTTTTAT-CTGATAGCAGCGAGATTATTGTTT 1344
consensus_10618#2      ------------------------------------------------------------
                                                                                   

consensus_10618#0      TCTTCTATATTGTTGAATTGTGTTTTGTAATGAAGATCACACATGTTTATAAATTAAT-T 1488
consensus_10618#1      TATTTGGTTTTCTTTAAATATGTATATTCATTTAA--CAGACATG-----AGATTGATGT 1397
consensus_10618#2      ------------------------------------------------------------
                                                                                   

consensus_10618#0      AATAGAAGCATTTAGGGTGGCCGGAGTGTGTGCTGTTGTCAGTGTAACACCGATTTATCA 1548
consensus_10618#1      GAGTAAAATATGTCAAATA--TAGATTTTTTTCCAAAAA--------------------- 1434
consensus_10618#2      ------------------------------------------------------------
                                                                                   

consensus_10618#0      TTTTCGATCAAGCTGAGTTCTTGCCAACTCCCTCAAAAGTCATCTGTAAGGGCGATTTCT 1608
consensus_10618#1      ------------------------------------------------------------
consensus_10618#2      ------------------------------------------------------------
                                                                                   

consensus_10618#0      GGGCTGCAAATCAACGTTGTTTGTCAGTACTGTGTTCGGTCTTCAAAGTTCAAATGTGTT 1668
consensus_10618#1      ------------------------------------------------------------
consensus_10618#2      ------------------------------------------------------------
                                                                                   

consensus_10618#0      CATCCCTTGTAAATTTTGTTTGGGAGGTACTTTCTCCGTTTCACAATGTAAGTCATTCTA 1728
consensus_10618#1      ------------------------------------------------------------
consensus_10618#2      ------------------------------------------------------------
                                                                                   

consensus_10618#0      GCATTACGGGCATTTATATTGAGATTCCT 1757
consensus_10618#1      -----------------------------
consensus_10618#2      -----------------------------
                                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)