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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10619#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1368 fasta sequence
[TTTCTTTACTGTCTCAAAAAAAAAAAAAGCTCTCTTTGTTCTTCGTCAGAGAGAGTCCACGGGTTGACAGTTCCACTCCTGCTCTCTTGGAGGCTTGGAGATCAATCGATGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAGGTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCGCCGGTCGCCGAGGAAGACGGCGTCGCCGTCGTCAGGCGAGCGTTCGAGGCCGGCGTCACCTTCTTCGACACCTCCGATGCCTACGGCCCGCACACCAACGAAGTCCTTCTGGGGAAGGCACTGAAGCAACTACCTCGTGAGAAGGTACAAGTGGCCACCAAGTTCGGCATTGCAGGATTTGATGCCAATGGCATGCTTGTGAAGGGCACTCCGGATTATGTGCGTGCATGCTGTGAAGCAAGCCTTGAGCGCCTTGCTGTTGACTACATTGATCTGTACTATCAGCATCGCATTGACCAGTCAGTACCCATAGAGGAAAC----TATGGGAGAACTAAAGAAGTTGGTGGAAGAAGGTAAAGTTAAATTTGTTGGCTTATCTGAGGCCAGTGCTGATACCATTAGACGAGCACATGCAGTTTACCCAATCACCGCAGTGCAGATGGAGTGGTCTCTATGGACCAGGGATATAGAGGAAGAAATAATCCCGCTGTGCAGGGAGCTTGGCATTGGAATTGTTCCATATAGCCCAATTGGCCGTGGCTTCTTTGCTGGCAGGGCTGCTGTACAGAGCATACCATCTGAGAGTTGGCTGACTAGACATCCAAGGTACAATGGGGAAAACTTGGAGAAGAATAAAGTTTTCTACACACGAATTGAAGAGCTTGCCACCAAGTATGGCTGCTCCCCTGCTCAACTTGCTCTCTCCTGGGTTCTTCATCAAGGGGATGATGTTGTTCCAATCCCTGGCACAACAAAAGTGAAGAACCTTGATGATAACATTGGTGCTGTAAAGGTAAAGCTGAGCAAGGAAGACCTGAAAGAAATCTCAGCTGCTGTCCCTGCTGGCGAGGTGGCTGGGTCCAGACTTATTGGAGTACTGGAGCCTTATTCTTGGAGGGTTGCAAACACTCCACCTCCAAAATCATTGTAAATATTAAGATGCAAATTAAAATATACTCTAGCTATGCTATGTTTTATTTCTTTCTAGCCCCATTGGATACTTATTCAAGGCTTAATTTGAACAAACTATGTTTGTCCATGCCCAAGAAAAGATTGTGTATTTTGGGCAACAGATGTTATTGGTGTTGTACTGCTGTGTGCAATGTAGTGATTGCTTTACATTATCAAAAAAATATATGTCATATTGATGTTAAAAAAA]
[+] EMBL CB683994 [TTTCTTTACTGTCTCAAAAAAAAAAAAAGCTCTCTTTGTTCTTCGTCAGAGAGAGTCCACGGGTTGACAGTTCCACTCCTGCTCTCTTGGAGGCTTGGAGATCAATCGATGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAGGTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCGCCGGTCGCCGAGGAAGACGGCGTCGCCGTCGTCGGGCGAGCGTTCGAGGCCGGCGTCACCTTCTTCGACACCTCCGATGCCTACGGCCCGCACACCAACGAAGTGCTTCTGGGGAAGGCACTGAAGCAACTACCTCGTGAGAAGGTACAAGTGGCCACCAAGTTCGGCATTGCAGGATTTGATGCCAATGGCATGCTTGTGAAGGGCACTCCGGATTATGTGCGTGCATGCTGTGAAGCAAGCCTTGAGCGCCTTGCTGTTGACTACATTGATCTGAACTATCAGCATCGCATTGACCAGTCAGTACCCATACAGGAAACTGTGTATGGGAGAACTAAAGAAGTTGGTGGAAGAAGGTAAAGTTAAATTTGTTGGCTTATCTGAAGCCAGTGCTGATACCATTAGACGAGCACATGCAGTTTACCCGATCACCGCATTGCACATGGAGTGGTCTCTATGGACCAGGGATATAGAGGAAGAAATAATCCCGCTGTGCAGGGAGCTTGGCATTGGAATTGTTCCATATAGGCCAATTGGCCGTGGCTTCTTTGCTGGCAc ]
[+] EMBL AK064344 [ AAAAAAAGCTCTCTTTGTTCTTCGTCAGAGAGAGTCCACGGGTTGACAGTTCCACTCCTGCTCTCTTGGAGGCTTGGAGATCAATCGATGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAGGTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCGCCGGTCGCCGAGGAAGACGGCGTCGCCGTCGTCAGGCGAGCGTTCGAGGCCGGCGTCACCTTCTTCGACACCTCCGATGCCTACGGCCCGCACACCAACGAAGTCCTTCTGGGGAAGGCACTGAAGCAACTACCTCGTGAGAAGGTACAAGTGGCCACCAAGTTCGGCATTGCAGGATTTGATGCCAATGGCATGCTTGTGAAGGGCACTCCGGATTATGTGCGTGCATGCTGTGAAGCAAGCCTTGAGCGCCTTGCTGTTGACTACATTGATCTGTACTATCAGCATCGCATTGACCAGTCAGTACCCATAGAGGAAAC TATGGGAGAACTAAAGAAGTTGGTGGAAGAAGGTAAAGTTAAATTTGTTGGCTTATCTGAGGCCAGTGCTGATACCATTAGACGAGCACATGCAGTTTACCCAATCACCGCAGTGCAGATGGAGTGGTCTCTATGGACCAGGGATATAGAGGAAGAAATAATCCCGCTGTGCAGGGAGCTTGGCATTGGAATTGTTCCATATAGCCCAATTGGCCGTGGCTTCTTTGCTGGCAGGGCTGCTGTACAGAGCATACCATCTGAGAGTTGGCTGACTAGACATCCAAGGTACAATGGGGAAAACTTGGAGAAGAATAAAGTTTTCTACACACGAATTGAAGAGCTTGCCACCAAGTATGGCTGCTCCCCTGCTCAACTTGCTCTCTCCTGGGTTCTTCATCAAGGGGATGATGTTGTTCCAATCCCTGGCACAACAAAAGTGAAGAACCTTGATGATAACATTGGTGCTGTAAAGGTAAAGCTGAGCAAGGAAGACCTGAAAGAAATCTCAGCTGCTGTCCCTGCTGGCGAGGTGGCTGGGTCCAGACTTATTGGAGTACTGGAGCCTTATTCTTGGAGGGTTGCAAACACTCCACCTCCAAAATCATTGTAAATATTAAGATGCAAATTAAAATATACTCTAGCTATGCTATGTTTTATTTCTTTCTAGCCCCATTGGATACTTATTCAAGGCTTAATTTGAACAAACTATGTTTGTCCATGCCCAAGAAAAGATTGTGTATTTTGGGCAACAGATGTTATTGGTGTTGTACTGCTGTGTGCAATGTAGTGATTGCTTTACGTTATCAAAAAAATATATGTCATATTGA ]
[+] EMBL AK099316 [ TGTTCTTCGTCAGAGAGAGTCCACGGGTTGACAGTTCCACTCCTGCTCTCTTGGAGGCTTGGAGATCAATCGATGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAGGTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCGCCGGTCGCCGAGGAAGACGGCGTCGCCGTCGTCAGGCGAGCGTTCGAGGCCGGCGTCACCTTCTTCGACACCTCCGATGCCTACGGCCCGCACACCAACGAAGTCCTTCTGGGGAAGGCACTGAAGCAACTACCTCGTGAGAAGGTACAAGTGGCCACCAAGTTCGGCATTGCAGGATTTGATGCCAATGGCATGCCTGTGAAGGGCACTCCGGATTATGTGCGTGCATGCTGTGAAGCAAGCCTTGAGCGCCTTGCTGTTGACTACATTGATCTGTACTATCAGCATCGCATTGACCAGTCAGTACCCATAGAGGAAAC TATGGGAGAACTAAAGAAGTTGGTGGAAGAAGGTAAAGTTAAATTTGTTGGCTTATCTGAGGCCAGTGCTGATACCATTAGACGAGCACATGCAGTTTACCCAATCACCGCAGTGCAGATGGAGTGGTCTCTATGGACCAGGGATATAGAGGAAGAAATAATCCCGCTGTGCAGGGAGCTTGGCATTGGAATTGTTCCATATAGCCCAATTGGCCGTGGCTTCTTTGCTGGCAGGGCTGCTGTACAGAGCATACCATCTGAGAGTTGGCTGACTAGACATCCAAGGTACAATGGGGAAAACTTGGAGAAGAATAAAGTTTTCTACACACGAATTGAAGAGCTTGCCACCAAGTATGGCTGCTCCCCTGCTCAACTTGCTCTCTCCTGGGTTCTTCATCAAGGGGATGATGTTGTTCCAATCCCTGGCACAACAAAAGTGAAGAACCTTGATGATAACATTGGTGCTGTAAAGGTAAAGCTGAGCAAGGAAGACCTGAAAGAAATCTCAGCTGCTGTCCCTGCTGGCGAGGTGGCTGGGTCCAGACTTATTGGAGTACTGGAGCCTTATTCTTGGAGGGTTGCAAACACTCCACCTCCAAAATCATTGTAAATATTAAGATGCAAATTAAAATATACTCTAGCTATGCTATGTTTTATTTCTTTCTAGCCCCATTGGATACTTATTCAAGGCTTAATTTGAACAAACTATGTTTGTCCATGCCCAAGAAAAGATTGTGTATTTTGGGCAACAGATGTTATTGGTGTTGTACTGCTGTGTGCAATGTAGTGATTGCTTTACATTATCAAAAAAATATATGTCA ]
[+] EMBL CF296513 [ TCGTCAGAGAGAGTCCACGGGTTGACAGTTCCACTCCTGCTCTCTTGGAGGCTTGGAGATCAATCGATGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAGGTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCGCCGGTCGCCGAGGAAGA ]
[+] EMBL CB658120 [ ACGGGTTGACAGTTCCACTCCTGCTCTCTTGGAGGCTTGGAGATCAATCGATGGAGCACGTCCAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAGGTGTCCAAGCTCGGGTTCGGGTGCATGGGCCTCACCGGCGTCTACAATGCGCCGGTCGCCGAGGAAGACGGCGTCGCCGTCGTCAGGCGAGCGTTCGAGGCCGGCGTCACCTTCTTCGACACCTCCGATGCCTACGGCCCGCACACCAACGAAGTCCTTCTGGGGAAGGCACTGAAGCAACTACCTCGTGAGAAGGTACAAGTGGCCACCAAGTTCGGCATTGCAGGATTTGATGCCAATGGCATGCTTGTGAAGGGCACTCCGGATTATGTGCGTGCATGCTGTGAAGCAAGCCTTGAGCGCCTTGCTGTTGACTACATTGATCTGTACTATCAGCATCGCATTGACCAGTCAGTACCCATAGAGGAAAC TATGGGAGAACTAAAGAAGTTGGTGGAAGAAGGTAAAGTTAAATTTGTTGGCTTATCTGAGGCCAGTGCTGATACCATTAGACGAGCACATGCAGTTTACCCAATCACCGCAGTGCAGATGGAGTGGTCTCTATGGACCAGGGATATAGAGGAAGAAATAATCCCGCTGTGCAGGGAGCTTGGCATTGGAATTGTTCCATATAGCCCAATTGGCCGTGGCTTCTTTGCTGGCANGGCTGCTGTACAGAGCATACCATCTGAGAGTTGG ]
[-] EMBL CF296514 [ GAAGACCTGAAAGAAATCTCAGCTGCTGTCCCTGCTGGCGAGGTGGCTGGGTCCAGACTTATTGGAGTACTGGAGCCTTATTCTTGGAGGGTTGCAAACACTCCACCTCCAAAATCATTGTAAATATTAAGATGCAAATTAAAATATACTCTAGCTATGCTATGTTTTATTTCTTTCTAGCCCCATTGGATACTTATTCAAGGCTTAATTTGAACAAACTATGTTTGTCCATGCCCAAGAAAAGATTGTGTATTTTGGGCAACAGATGTTATTGGTGTTGTACTGCTGTGTGCAATGTAGTGATTGCTTTACATTATCAAAAAAATATATGTCATATTGATGTTAAAAAAA]
consensusID : consensus_10619#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 827 fasta sequence
[GGAGTGGTCTCTATGGACCAGGGATATAGAGGAAGAAATAATCCCGCTGTGCAGGGAGCTTGGCATTGGAATTGTTCCATATAGCCCAATTGGCCGTGGCTTCTTTGCTGGCAGGGCTGCTGTACAGAGCATACCATCTGAGAGTTGGCTGGTAAAATTAAATTCACACTACTATAATCTTCTTCTACACAGGGAAGTTTGGGTATAGTCTTCTATTCTGCAGTTGAGTACATCCTATAACTTAGTATCTTCTTTGCTACTTCACAGACTAGACATCCAAGGTACAATGGGGAAAACTTGGAGAAGAATAAAGTTTTCTACACACGAATTGAAGAGCTTGCCACCAAGTATGGCTGCTCCCCTGCTCAACTTGCTCTCTCCTGGGTTCTTCATCAAGGGGATGATGTTGTTCCAATCCCTGGCACAACAAAAGTGAAGAACCTTGATGATAACATTGGTGCTGTAAAGGTAAAGCTGAGCAAGGAAGACCTGAAAGAAATCTCAGCTGCTGTCCCTGCTGGCGAGGTGGCTGGGTCCAGACTTATTGGAGTACTGGAGCCTTATTCTTGGAGGGTTGCAAACACTCCACCTCCAAAATCATTGTAAATATTAAGATGCAAATTAAAATATACTCTAGCTATGCTATGTTTTATTTCTTTCTAGCCCCATTGGATACTTATTCAAGGCTTAATTTGAACAAACTATGTTTGTCCATGCCCAAGAAAAGATTGTGTATTTTGGGCAACAGATGTTATTGGTGTTGTACTGCTGTGTGCAATGTAGTGATTGCTTTACATTATCAAAAAAATATATGTCATATTGATGTT]
[-] EMBL CB683995 [GGAGTGGTCTCTATGGACCAGGGATATAGAGGAAGAAATAATCCCGCTGTGCAGGGAGCTTGGCATTGGAATTGTTCCATATAGCCCAATTGGCCGTGGCTTCTTTGCTGGCAGGGCTGCTGTACAGAGCATACCATCTGAGAGTTGGCTGGTAAAATTAAATTCACACTACTATAATCTTCTTCTACACAGGGAAGTTTGGGTATAGTCTTCTATTCTGCAGTTGAGTACATCCTATAACTTAGTATCTTCTTTGCTACTTCACAGACTAGACATCCAAGGTACAATGGGGAAAACTTGGAGAAGAATAAAGTTTTCTACACACGAATTGAAGAGCTTGCCACCAAGTATGGCTGCTCCCCTGCTCAACTTGCTCTCTCCTGGGTTCTTCATCAAGGGGATGATGTTGTTCCAATCCCTGGCACAACAAAAGTGAAGAACCTTGATGATAACATTGGTGCTGTAAAGGTAAAGCTGAGCAAGGAAGACCTGAAAGAAATCTCAGCTGCTGTCCCTGCTGGCGAGGTGGCTGGGTCCAGACTTATTGGAGTACTGGAGCCTTATTCTTGGAGGGTTGCAAACACTCCACCTCCAAAATCATTGTAAATATTAAGATGCAAATTAAAATATACTCTAGCTATGCTATGTTTTATTTCTTTCTAGCCCCATTGGATACTTATTCAAGGCTTAATTTGAACAAACTATGTTTGTCCATGCCCAAGAAAAGATTGTGTATTTTGGGCAACAGATGTTATTGGTGTTGTACTGCTGTGTGCAATGTAGTGATTGCTTTACATTATCAAAAAAATATATGTCATATTGATGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10619#0 TTTCTTTACTGTCTCAAAAAAAAAAAAAGCTCTCTTTGTTCTTCGTCAGAGAGAGTCCAC 60
consensus_10619#1 ------------------------------------------------------------
consensus_10619#0 GGGTTGACAGTTCCACTCCTGCTCTCTTGGAGGCTTGGAGATCAATCGATGGAGCACGTC 120
consensus_10619#1 ------------------------------------------------------------
consensus_10619#0 CAGATCCCGAGAGTGAAGCTGGGAACCCAGGGCCTCGAGGTGTCCAAGCTCGGGTTCGGG 180
consensus_10619#1 ------------------------------------------------------------
consensus_10619#0 TGCATGGGCCTCACCGGCGTCTACAATGCGCCGGTCGCCGAGGAAGACGGCGTCGCCGTC 240
consensus_10619#1 ------------------------------------------------------------
consensus_10619#0 GTCAGGCGAGCGTTCGAGGCCGGCGTCACCTTCTTCGACACCTCCGATGCCTACGGCCCG 300
consensus_10619#1 ------------------------------------------------------------
consensus_10619#0 CACACCAACGAAGTCCTTCTGGGGAAGGCACTGAAGCAACTACCTCGTGAGAAGGTACAA 360
consensus_10619#1 ------------------------------------------------------------
consensus_10619#0 GTGGCCACCAAGTTCGGCATTGCAGGATTTGATGCCAATGGCATGCTTGTGAAGGGCACT 420
consensus_10619#1 ------------------------------------------------------------
consensus_10619#0 CCGGATTATGTGCGTGCATGCTGTGAAGCAAGCCTTGAGCGCCTTGCTGTTGACTACATT 480
consensus_10619#1 ------------------------------------------------------------
consensus_10619#0 GATCTGTACTATCAGCATCGCATTGACCAGTCAGTACCCATAGAGGAAACTATGGGAGAA 540
consensus_10619#1 -----------------------GGAGTGGTCTCTATGGACCAGGGATATAGAGGAAGAA 37
** *** ** * *** * ** ****
consensus_10619#0 CTAAAGAAGTTGGTGGAAGAAGGTAAAGTTAAATTTGTTGGCTTATCTGAGGCCAGT--G 598
consensus_10619#1 ATAATCCCGCTGTGCAGGGAGCTTGGCATTGGAATTGTT---CCATAT-AGCCCAATTGG 93
*** * ** ** * ** * ***** ** * ** *** * *
consensus_10619#0 CTGATACCATTAGACGAGCACATGCAGTTTACCCAATCACCGCAGTGCAGATGGAGTGGT 658
consensus_10619#1 CCGTGGCTTCTTTGCTGGCA-GGGCTGCTGTACAGAGCATACCATCTGA----GAGTTGG 148
* * * * * *** ** * * * * ** ** * **** *
consensus_10619#0 CTCTATGGACCAGGGATATAGAGGAAGAAATAATCCCGCTGTGCAGGGAGCTTGGCATTG 718
consensus_10619#1 CTGGTAAAATTAA--ATTCACACTACTATAATCTTCTTCTACACAGGGAAGTT----TGG 202
** * * ** * * * * * * * ** ****** ** * *
consensus_10619#0 GAATTGTTCCATATAGCCCAATTGGCCGTGGCTTCTTTGCTGGCAGGGCTGCTGTACAGA 778
consensus_10619#1 GTATAGTCTTCTATTCTGCAGTTGA--GTACATCCTATA----------------ACTTA 244
* ** ** *** ** *** ** * ** * ** *
consensus_10619#0 GCATACCATCTGAGAGTTGGCTGACTAGACATCCAAGGTACAATGGGGAAAACTTGGAGA 838
consensus_10619#1 GTATCTTCTTTGCTACTTCACAGACTAGACATCCAAGGTACAATGGGGAAAACTTGGAGA 304
* ** * ** * ** * **************************************
consensus_10619#0 AGAATAAAGTTTTCTACACACGAATTGAAGAGCTTGCCACCAAGTATGGCTGCTCCCCTG 898
consensus_10619#1 AGAATAAAGTTTTCTACACACGAATTGAAGAGCTTGCCACCAAGTATGGCTGCTCCCCTG 364
************************************************************
consensus_10619#0 CTCAACTTGCTCTCTCCTGGGTTCTTCATCAAGGGGATGATGTTGTTCCAATCCCTGGCA 958
consensus_10619#1 CTCAACTTGCTCTCTCCTGGGTTCTTCATCAAGGGGATGATGTTGTTCCAATCCCTGGCA 424
************************************************************
consensus_10619#0 CAACAAAAGTGAAGAACCTTGATGATAACATTGGTGCTGTAAAGGTAAAGCTGAGCAAGG 1018
consensus_10619#1 CAACAAAAGTGAAGAACCTTGATGATAACATTGGTGCTGTAAAGGTAAAGCTGAGCAAGG 484
************************************************************
consensus_10619#0 AAGACCTGAAAGAAATCTCAGCTGCTGTCCCTGCTGGCGAGGTGGCTGGGTCCAGACTTA 1078
consensus_10619#1 AAGACCTGAAAGAAATCTCAGCTGCTGTCCCTGCTGGCGAGGTGGCTGGGTCCAGACTTA 544
************************************************************
consensus_10619#0 TTGGAGTACTGGAGCCTTATTCTTGGAGGGTTGCAAACACTCCACCTCCAAAATCATTGT 1138
consensus_10619#1 TTGGAGTACTGGAGCCTTATTCTTGGAGGGTTGCAAACACTCCACCTCCAAAATCATTGT 604
************************************************************
consensus_10619#0 AAATATTAAGATGCAAATTAAAATATACTCTAGCTATGCTATGTTTTATTTCTTTCTAGC 1198
consensus_10619#1 AAATATTAAGATGCAAATTAAAATATACTCTAGCTATGCTATGTTTTATTTCTTTCTAGC 664
************************************************************
consensus_10619#0 CCCATTGGATACTTATTCAAGGCTTAATTTGAACAAACTATGTTTGTCCATGCCCAAGAA 1258
consensus_10619#1 CCCATTGGATACTTATTCAAGGCTTAATTTGAACAAACTATGTTTGTCCATGCCCAAGAA 724
************************************************************
consensus_10619#0 AAGATTGTGTATTTTGGGCAACAGATGTTATTGGTGTTGTACTGCTGTGTGCAATGTAGT 1318
consensus_10619#1 AAGATTGTGTATTTTGGGCAACAGATGTTATTGGTGTTGTACTGCTGTGTGCAATGTAGT 784
************************************************************
consensus_10619#0 GATTGCTTTACATTATCAAAAAAATATATGTCATATTGATGTTAAAAAAA 1368
consensus_10619#1 GATTGCTTTACATTATCAAAAAAATATATGTCATATTGATGTT------- 827
*******************************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||