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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10621#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1076 fasta sequence
[GATTTCCGCCTTCAGGGGTTTCTGAACGAGAGAGAGACAGACGGCGGCGGGCGGCG-GCGGCGGCGGCGAGGGAGCCGAAGCCTGAGAGGATGGTGTTTGGCCGGAGCAAGTCGTCCTCGTCGACGGCGTCTCCTCCCCCTGCTGCGGCGGCTTCCTCGGCGGCCGCGGCGGCGTGCTCGGAGCTGCGTGCGGCGTACCACGAGTGCTTCAACCGCTGGTACGCGGAGAAGTTCGCCAAGGGGCAATGGCACAAGGACGACTGCGTCGGCGAGTGGCACAAGTACCGCGCCTGCCTCGAGGAACATCTGGAAGACAAGAATCTCAGGCAAATCCTATTGGAATCAGAAACATCTGCCTACTATGCCCAGTTTGATGCTGATTCTTCTTCTCGAAAAGGTGGCACCTCGACGAAGTGACAACCTAGGGCTAACCACATATGATCAAGTTTCGCTTGACTCAACCTGGATTAGGAGACCCTCATAGATGAACGAAAAAGGTGTTTGTATTTTACATATTAGATGCATGTTCATGCTGTTGCATCGCGCTGCAGTTCAGCAGCTGAGATGTAAGCTTTTCCAAGATCATATTGAACTCAAACCTACAACTTTGATGTACCCTGAAATTTGCAGCAGTTTCTCTTCCTGAATCTGGGAGAACAGCTTCAGCTATATGTAAACTTAAAAAATATTCTCCAACCCACCAATTTTGTGCTGCATCGATGCAAATTTTCAATACCTCCTATATGCCATCTTCCAAAGTCCTTTGAGCATAGTTCTGGTAGCGTGACAGTGACTTGCAGTCTTGGAGGCTCTTGTGTTGTCCGAATCAGATGCCTTGACTTTGTTGTCTATTATGATGGATTCATTCAACAAAGCTTATTGTTTGTCACATAGGCCTGATCCTCTCTGATGTGGTGGCAAACAAGCAGTGAAAGCTACCAGTCTACCACTCACTCAGGGAAGCTTCGTAGCAAAGCAAAGCATCAGCCTTCACCTTGTCCAGAGCCCAGAGAAAAGGGATCCCCTTCAAGCTGCTGTTCTTCATGGCCAAGAAAGGCAAGAACAACTCTACCAGAA]
[+] EMBL AK063109 [GATTTCCGCCTTCAGGGGTTTCTGAACGAGAGAGAGACAGACGGCGGCGGGCGGCG GCGGCGGCGGCGAGGGAGCCGAAGCCTGAGAGGATGGTGTTTGGCCGGAGCAAGTCGTCCTCGTCGACGGCGTCTCCTCCCCCTGCTGCGGCGGCTTCCTCGGCGGCCGCGGCGGCGTGCTCGGAGCTGCGTGCGGCGTACCACGAGTGCTTCAACCGCTGGTACGCGGAGAAGTTCGCCAAGGGGCAATGGCACAAGGACGACTGCGTCGGCGAGTGGCACAAGTACCGCGCCTGCCTCGAGGAACATCTGGAAGACAAGAATCTCAGGCAAATCCTATTGGAATCAGAAACATCTGCCTACTATGCCCAGTTTGATGCTGATTCTTCTTCTCGAAAAGGTGGCACCTCGACGAAGTGACAACCTAGGGCTAACCACATATGATCAAGTTTCGCTTGACTCAACCTGGATTAGGAGACCCTCATAGATGAACGAAAAAGGTGTTTGTATTTTACATATTAGATGCATGTTCATGCTGTTGCATCGCGCTGCAGTTCAGCAGCTGAGATGTAAGCTTTTCCAAGATCATATTGAACTCAAACCTACAACTTTGATGTACCCTGAAATTTGCAGCAGTTTCTCTTCCTGAATCTGGGAGAACAGCTTCAGCTATATGTAAACTTAAAAAATAT ]
[+] EMBL CB631973 [ GCGGCGCGCGGCGGCGGCGAGGGAGCCGAAGCCTGAGAGGATGGTGTTTGGCCGGAGCAAGTCGTCCTCGTCGACGGTGTCTCCTCCCCCTGCTGCGGCGGCTTCCTCGGCGGCCGCGGCGGCGTGCTCGGAGCTGCGTGCGGCGTACCACGAGTGCTTCAACCGCTGGTACGCGGAGAAGTTCGCCAAGGGGCAATGGCACAAGGACGACTGCGTCGGCGAGTGGCACAAGTACCGCGCCTGCCTCGAGGAACATCTGGAAGACAAGAATCTCAGGCAAATCCTATTGGAATCAGAAACATCTGCCTACTATGCCCAGTTTGATGCTGATTCTTCTTCTCGAAAAGGTGGCACCTCGACGAAGTGACAACCTAGGGCTAACCACATATGATCAAGTTTCGCTTGACTCAACCTGGATTAGGAGACCCTCATAGATGAACGAAAAAGGTGTTTGTATTTTACATATTAGATGCATGTTCATGCTGTTGCATCGCGCTGCAGTTCAGCAGCTGAGATGTAAGCTTTTCCAAGATCATATTGAACTCAAACCTACAACTTTGATGTACCCTGAAATTTGCAGCAGTTTCTCTTCCTGAATCTGGGAGAACAGCTTCAGCTAT ]
[+] EMBL AK073702 [ GAAGACAAGAATCTCAGGCAAATCCTATTGGAATCAGAAACATCTGCCTACTATGCCCAGTTTGATGCTGATTCTTCTTCTCGAAAAGGTGGCACCTCGACGAAGTGACAACCTAGGGCTAACCACATATGATCAAGTTTCGCTTGACTCAACCTGGATTAGGAGACCCTCATAGATGAACGAAAAAGGTGTTTGTATTTTACATATTAGATGCATGTTCATGCTGTTGCATCGCGCTGCAGTTCAGCAGCTGAGATGTAAGCTTTTCCAAGATCATATTGAACTCAAACCTACAACTTTGTTGTACCCTGAAATTTGCAGCAGTTTCTCTTCCTGAATCTGGGAGAACAGCTTCAGCTATATGTAAACTTAAAAAATATTCTCCAACCCACCAATTTTGTGCTGCATCGATGCAAATTTTCAATACCTCCTATATGCCATCTTCCAAAGTCCTTTGAGCATAGTTCTGGTAGCGTGACAGTGACTTGCAGTCTTGGAGGCTCTTGTGTTGTCCGAATCAGATGCCTTGACTTTGTTGTCTATTATGATGGATTCATTCAACAAAGCTTATTGTTTGTCACATAGGCCTGATCCTCTCTGATGTGGTGGCAAACAAGCAGTGAAAGCTACCAGTCTACCACTCACTCAGGGAAGCTTCGTAGCAAAGCAAAGCATCAGCCTTCACCTTGTCCAGAGCCCAGAGAAAAGGGATCCCCTTCAAGCTGCTGTTCTTCATGGCCAAGAAAGGCAAGAACAACTCTACCAGAA]
consensusID : consensus_10621#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence
[TGATTTCCGCCTTCAGGGGTTTCTGAACGAGAGAGAGACAGACGGCGGCGGGCGGCGGCGGCGGCGGCGAGGGAGCCGAAGCCTGAGAGGATGGTGTTTGGCCGGAGCAAGTCGTCCTCGTCGACGGCGTCTCCTCCCCCTGCTGCGGCGGCTTCCTCGGCGGCCGCGGCGGCGTGCTCGGAGCTGCGTGCGGCGTACCACGAGTGCTTCAACCGCTGGTACGCGGAGAAGTTCGCCAAGGGGCAATGGCACAAGGACGACTGCGTCGGCGAGTGGCACAAGTACCGCGCCTGCCTCGAGGTCACTCCCTTCTCGCCGCCTCCGAATTCGATCACAGCATCACTGATTTATTACCGATCCCCTCAATTTGTTGCAAAGACGACTGCCCTAGGGATTGCTCTTGTGTTTTCGCAGTTTAGGATGGGGTTTCATTTAAGTAGGTTTTTAGTTTATATGGCAAGAAATCGAGTTGTTTTCTAGTGTGTTGGTTGCTAGATCAAGTTGATAAAGTGGCTTATGTAATGGTGATGGCTAAAGCCTAAAGGGGATTCTTCTTTGAAGAATCATCTGATTTGGAGCTCCTAGTTAGACCTCTGTCTGTTTGTTGGTCATGATTCAGGCTAGGCGGCGCATGCGCTGCGCTGGCCTGTTGAA]
[+] EMBL AK109244 [TGATTTCCGCCTTCAGGGGTTTCTGAACGAGAGAGAGACAGACGGCGGCGGGCGGCGGCGGCGGCGGCGAGGGAGCCGAAGCCTGAGAGGATGGTGTTTGGCCGGAGCAAGTCGTCCTCGTCGACGGCGTCTCCTCCCCCTGCTGCGGCGGCTTCCTCGGCGGCCGCGGCGGCGTGCTCGGAGCTGCGTGCGGCGTACCACGAGTGCTTCAACCGCTGGTACGCGGAGAAGTTCGCCAAGGGGCAATGGCACAAGGACGACTGCGTCGGCGAGTGGCACAAGTACCGCGCCTGCCTCGAGGTCACTCCCTTCTCGCCGCCTCCGAATTCGATCACAGCATCACTGATTTATTACCGATCCCCTCAATTTGTTGCAAAGACGACTGCCCTAGGGATTGCTCTTGTGTTTTCGCAGTTTAGGATGGGGTTTCATTTAAGTAGGTTTTTAGTTTATATGGCAAGAAATCGAGTTGTTTTCTAGTGTGTTGGTTGCTAGATCAAGTTGATAAAGTGGCTTATGTAATGGTGATGGCTAAAGCCTAAAGGGGATTCTTCTTTGAAGAATCATCTGATTTGGAGCTCCTAGTTAGACCTCTGTCTGTTTGTTGGTCATGATTCAGGCTAGGCGGCGCATGCGCTGCGCTGGCCTGTTGAA]
consensusID : consensus_10621#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 491 fasta sequence
[TCTTCATGGCCAAGAAAGGCAAGACCAACTCTACCAGAAGAGCCTCTGCTTCTTCTTCTTCTTCNTCTGCCGCAGCCGATGGCGATGGATCGCCATGGCTGCGGCTGACGGCCTTCGCCGTGCTCACCCTCCACTCGGCTTTCTCTGCATATCTGGCTAGAGATGACGCGAGGCTGGTCGCCCTCGTCGTCGTCGGCTACCTCCTGATGCTGGTGCTGCTGTTCTATGGCCTGGCCGTGCCTGTCCAACAGAAGAGAGACTAAGGTGAGGCTTCAGCAATCAGTCCTCAAGCATGAACCTGCCTTGTTTTTTTNTCCTTTTTGCTGGTTTGGTTTTCTTGCATGGTTTGATCTTGGTATTGAACTATGGATGTTATGTACAACCCTGTACATGCTGATCAAATGTGTATCTGTATGTTTAATTATTGATGTTACCAAAGAATCACATGTATAATATAAGTAATTCGAAAGAGCCACAAAAACAAAAAAACA]
[+] EMBL AU031731 [TCTTCATGGCCAAGAAAGGCAAGACCAACTCTACCAGAAGAGCCTCTGCTTCTTCTTCTTCTTCNTCTGCCGCAGCCGATGGCGATGGATCGCCATGGCTGCGGCTGACGGCCTTCGCCGTGCTCACCCTCCACTCGGCTTTCTCTGCATATCTGGCTAGAGATGACGCGAGGCTGGTCGCCCTCGTCGTCGTCGGCTACCTCCTGATGCTGGTGCTGCTGTTCTATGGCCTGGCCGTGCCTGTCCAACAGAAGAGAGACTAAGGTGAGGCTTCAGCAATCAGTCCTCAAGCATGAACCTGCCTTGTTTTTTTNTCCTTTTTGCTGGTTTGGTTTTCTTGCATGGTTTGATCTTGGTATTGAACTATGGATGTTATGTACAACCCTGTACATGCTGATCAAATGTGTATCTGTATGTTTAATTATTGATGTTACCAAAGAATCACATGTATAATATAAGTAATTCGAAAGAGCCACAAAAACAAAAAAACA]
[+] EMBL OSR10161B [TCTTCATGGCCAAGAAAGGCAAGAACAACTCTACCAGAAGAGCCTCTGCTTCTTCTTCTTCTTCCTCTNCCGCAGCCGATGGCGATGGATCGCCATGGCTGCGGCTGACGGCCTTCGCCGTGCTCACCCTCCACTCGGCTTTCTCTGCATATCTGGCTAGAGATGACGCGAGGCTGGTCGNCCTCGTCGTCGTCGGCTACCTCCTGATGCT ]
consensusID : consensus_10621#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 173 fasta sequence
[TTTTTTTTTTTTTTATACTGAACTCCATAGTGTGTAGCTCTTTCGAATTGCTTATATTATGCATGTGATTCTTGGATAACATCAGTAATTAAACATACAGATAGACATTTGATCAGCATGTACAAGGTTGTACATAACATCCATAGTTCAATATCCCCCTTGTCTCGTCCTCT]
[+] EMBL CA760763 [TTTTTTTTTTTTTTATACTGAACTCCATAGTGTGTAGCTCTTTCGAATTGCTTATATTATGCATGTGATTCTTGGATAACATCAGTAATTAAACATACAGATAGACATTTGATCAGCATGTACAAGGTTGTACATAACATCCATAGTTCAATATCCCCCTTGTCTCGTCCTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10621#2 ------------------------------------------------------------
consensus_10621#3 ------------------------------------------------------------
consensus_10621#0 -GATTTCCGCCTTCAGGGGTTTCTGAACGAGAGAGAGACAGACGGCGGCGGGCGGCGGCG 59
consensus_10621#1 TGATTTCCGCCTTCAGGGGTTTCTGAACGAGAGAGAGACAGACGGCGGCGGGCGGCGGCG 60
consensus_10621#2 ----------------------TCTTCATGGCCAAGAAAGGCAAGACCAACTCTACCAGA 38
consensus_10621#3 ------------------------------------------------------------
consensus_10621#0 GCGGCGGCGAGGGAGCCGAAGCCTGAGAGGATGGTGTTTGGCCGGAGCAAGTCGTCCTCG 119
consensus_10621#1 GCGGCGGCGAGGGAGCCGAAGCCTGAGAGGATGGTGTTTGGCCGGAGCAAGTCGTCCTCG 120
consensus_10621#2 AGAGCCTCTGCTTCTTCTTCTTCTTCNTCTGCCGCAGCCGATGGCGATGGATCGCCATGG 98
consensus_10621#3 ------------------------------------------------------------
consensus_10621#0 TCGACGGCGTCTCCTCCCCCTGCTGCGGCGGCTTCCTCGGCGGCCGCGGCGGCGTGCTCG 179
consensus_10621#1 TCGACGGCGTCTCCTCCCCCTGCTGCGGCGGCTTCCTCGGCGGCCGCGGCGGCGTGCTCG 180
consensus_10621#2 CTGCGGCTGACGGCCTTCGCCGTGCTCACCCTCCACTCG-GCTTTCTCTGCATATCTGGC 157
consensus_10621#3 ------------------------------------------------------------
consensus_10621#0 GAGCTGCGTGCGGCGTACCACGAGTGCTTCAACCGCTGGTACGCGGAGAAGTTCGCCAAG 239
consensus_10621#1 GAGCTGCGTGCGGCGTACCACGAGTGCTTCAACCGCTGGTACGCGGAGAAGTTCGCCAAG 240
consensus_10621#2 TAGAGATGACGCGAGGCTGGTCGCCCTCGTCGTCGTCGGCTACCTCCTGATGCTGGTGCT 217
consensus_10621#3 ------------------------------------------------------------
consensus_10621#0 GGGCAATGGCACAAGGACGACTGCGTCGGCGAGTGGCACAAGTACCGCGCCTGCCTCGAG 299
consensus_10621#1 GGGCAATGGCACAAGGACGACTGCGTCGGCGAGTGGCACAAGTACCGCGCCTGCCTCGAG 300
consensus_10621#2 GCTGTTCTATGGCCTGGCCGTGCCTGTCCAACAGAAGAGAGACTAAGGTGAGGCTTCAGC 277
consensus_10621#3 ------------------------------------------------------------
consensus_10621#0 GAACATCTGGAAGACAAGAATCTCAGGCAAATCCTATTGGAATCAGAAACATCTGCCTAC 359
consensus_10621#1 GTCACTCCC-----TTCTCGCCGCCTCCGAATTCGATCA----CAGCATCACTGATTTAT 351
consensus_10621#2 AATCAGTCCTCAAGCATGAACCTGCCTTGTTTTTTTNTC--CTTTTTGCTGGTTTGGTTT 335
consensus_10621#3 -----------------------------TTTTTTTTTT--TTTTATACTGAACT--CCA 27
consensus_10621#0 TATGCCCAGTTTGATGCTGATTCTTCTTCTCGAAAAGGTGGCACCTCGACGAAGTGACAA 419
consensus_10621#1 TA--------CCGATCCC--CTCAATTTGTTGCAAAGACGACTGCCCTAGGGATTG-CTC 400
* * *
consensus_10621#2 TCTTGCATGGTTTGATCTTGGT---A-TTGAACTATGGATGTTATGTACAA-----CCCT 386
consensus_10621#3 TAGTGTGTAGCTCTTTCGAATT---GCTTATATTATGCATGTGATTCTTGG-----ATA- 78
consensus_10621#0 CCTAGGGCTAACCACATATGATCAAGTTTCGCTTGACTCAACCTGGATTAGGAGACCCTC 479
consensus_10621#1 TTGTGTTTTCGCAGTTTAGGATGGGGTTTCATTTAAGTAGGTTT---TTAG--------T 449
* * ** *
consensus_10621#2 GTACAT----GCTGATCAAATGTGTATCT-GTATGTT---TAATTATTGATGTTACCAAA 438
consensus_10621#3 --ACATC---AGTAATTAAACATACAGAT-AGACATT---TGATCAGC-ATGT------A 122
consensus_10621#0 ATAGATGAACGAAAAAGGTGTTTGTATTTTACATATTAGATGCATGTTCATGCTGTTGCA 539
consensus_10621#1 TTATATGGCAAGAAATCGAGTTGTTTTCTAGTGTGTTGGTTGCTAGATCAAGTTGATAAA 509
* ** * * ** * * * *
consensus_10621#2 GAATCACAT-GTATAATATAAGTAATTCGAAAGAGCCACAAAAACAAAAAAACA------ 491
consensus_10621#3 CAAGGTTGT-ACATAACATCCATAGTTCAATATCCCCCTTGTCTCGTCCTCT-------- 173
consensus_10621#0 TCGCGCTGCAGTTCAGCAGCTGAGATGTAAGCTTTTCCAAGATCATATTGAACTCAAACC 599
consensus_10621#1 GTGGCTTA---TGTAATGGTGATGGCTAAAGCCTAAAGGGGATTCTTCTTTGAAGAATCA 566
* *
consensus_10621#2 ------------------------------------------------------------
consensus_10621#3 ------------------------------------------------------------
consensus_10621#0 TACAACTTTGATGTACCC-TGAAATTTGCAGCAGTTTCTCT-TCCTGAATCTGGGAGAAC 657
consensus_10621#1 TCTGATTTGGAGCTCCTAGTTAGACCTCTGTCTGTTTGTTGGTCATGATTCAGGCTAGGC 626
consensus_10621#2 ------------------------------------------------------------
consensus_10621#3 ------------------------------------------------------------
consensus_10621#0 AGCTTCAGCTATATGTAAACTTAAAAAATATTCTCCAACCCACCAATTTTGTGCTGCATC 717
consensus_10621#1 GGCGCATGCGCTGCGCTGGCCTGTTGAA-------------------------------- 654
consensus_10621#2 ------------------------------------------------------------
consensus_10621#3 ------------------------------------------------------------
consensus_10621#0 GATGCAAATTTTCAATACCTCCTATATGCCATCTTCCAAAGTCCTTTGAGCATAGTTCTG 777
consensus_10621#1 ------------------------------------------------------------
consensus_10621#2 ------------------------------------------------------------
consensus_10621#3 ------------------------------------------------------------
consensus_10621#0 GTAGCGTGACAGTGACTTGCAGTCTTGGAGGCTCTTGTGTTGTCCGAATCAGATGCCTTG 837
consensus_10621#1 ------------------------------------------------------------
consensus_10621#2 ------------------------------------------------------------
consensus_10621#3 ------------------------------------------------------------
consensus_10621#0 ACTTTGTTGTCTATTATGATGGATTCATTCAACAAAGCTTATTGTTTGTCACATAGGCCT 897
consensus_10621#1 ------------------------------------------------------------
consensus_10621#2 ------------------------------------------------------------
consensus_10621#3 ------------------------------------------------------------
consensus_10621#0 GATCCTCTCTGATGTGGTGGCAAACAAGCAGTGAAAGCTACCAGTCTACCACTCACTCAG 957
consensus_10621#1 ------------------------------------------------------------
consensus_10621#2 ------------------------------------------------------------
consensus_10621#3 ------------------------------------------------------------
consensus_10621#0 GGAAGCTTCGTAGCAAAGCAAAGCATCAGCCTTCACCTTGTCCAGAGCCCAGAGAAAAGG 1017
consensus_10621#1 ------------------------------------------------------------
consensus_10621#2 -----------------------------------------------------------
consensus_10621#3 -----------------------------------------------------------
consensus_10621#0 GATCCCCTTCAAGCTGCTGTTCTTCATGGCCAAGAAAGGCAAGAACAACTCTACCAGAA 1076
consensus_10621#1 -----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||