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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10623#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1393 fasta sequence
[ACGACTGGCTGGGGTACCTCGAGCTCGCCGCCATGGCGCGCCGCTACGGCCTCCGCGTGCGCGCCATCCTCGCCTTCCACCAGTGCGGCGCCGGCCCGCACGACCCTCCATGGATCCCTCTACCTCAATGGGTACTTGAGGAGATGGATAAGTTGCCAGACTTGTCATATATGGATAGATACCAACGAAGAAATAAAGAATACATCTCACTCGGGTGTGATATTCTTCCGATTCTGAAGGGAAGATCACCAATGCAGGCTTATTCAGACTTCATGAGGAGCTTTCGAGATGCTTTTAAAGAGTACCTTGGGGCTATAGTGACAGAAGTTCAAATTGGAATGGGCCCAGGAGGTGAACTTAGGTATCCATCATGCCCAACTGAGACACTAAGTCAAGCAGGCATCTCATCTGAACTCGGGGAGTTTCAATGTTATGACAAGTTCATGCAAGCATCCCTGAGTGCTCGTGCACAACTTATTGGCATGCAAGATTGGGGAAACGGTGGTCCAACCGGCACAGATGGCTCACGACAGAACCCTGAAGAAACTAGTTTTTTCCGTGCTGATGGTGGATGCTGGAATACTCCTTATGGTCGGTTTTTCCTTGAGTGGTATTCAGGAATGCTGCTTCTTCATGGAGAGAGATTATGTATGGTTGCTGATGCTGTCTTCTCTGGTTCCGGTGTGACCATCGCCGGAAAGGTTTCTGGAATACATTGGCACTACTATACATGTTCGCACCCATCGGAACTGACTGCTGGTTACTACAACACATTGTTGAGGAACGGTTATCTTCCTATCACCCAAATGTTTGCTAGATACAAGGCTGCCTTGTG-CTGCAGTTGCTTTGACCTGAGGGATGAGGAGAGAAATAACTCCAAGAGCAGCCCAGAAGGTACTCTCCGGCAACTTATGGTCGCCGCCAAGATGTGCAATCTACCTCTGAACGGCGAAAACTCCGTGACAAGGCTCGACGATACGTCGCTGAATCAAGTCATCAGAAGCTCAAGGCTCTACTCAGGTGGCACCTCAGGGACATCTTTCTCCTTCAACTATGTCAGAATGAACAAGAGCCTGTTTGAGTTTCACAACTGGAACAGGTTCACCAAGTTCGTCAGGCAGATGTCGGATGCCAGGACATTTCTAGCCAGGCTCGAGTTCAGGAGAGGGCAGCATTACCTCTCCTCGATGTCGGTTGTCTGGGTCGTCAGCCGGGCCTGTGCATAGACATGAATCAGAATTGGCAAAGTGACTGCTAGAAATGTAGTGTTGTTCGTGTATCTGTAACTTGGATCATGAATGTGATTCGACAGAATT-GAAGAGAACTTTGTGCTCNNNANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CB653335 [ACGACTGGCTGGGGTACCTCGAGCTCGCCGCCATGGCGCGCCGCTACGGCCTCCGCGTGCGCGCCATCCTCGCCTTCCACCAGTGCGGCGCCGGCCCGCACGACCCTCCATGGATCCCTCTACCTCAATGGGTACTTGAGGAGATGGATAAGTTGCCAGACTTGTCATATATGGATAGATACCAACGAAGAAATAAAGAATACATCTCACTCGGGTGTGATATTCTTCCGATTCTGAAGGGAAGATCACCAATGCAGGCTTATTCAGACTTCATGAGGAGCTTTCGAGATGCTTTTAAAGAGTACCTTGGGGCTATAGTGACAGAAGTTCAAATTGGAATGGGCCCAGGAGGTGAACTTAGGTATCCATCATGCCCAACTGAGACACTAAGTCAAGCAGGCATCTCATCTGAACTCGGGGAGTTTCAATGTTATGACAAGTTCATGCAAGCATCCCTGAGTGCTCGTGCACAACTTATTGGCATGCAAGATTGGGGAAACGGTGGTCCAACCGGCACAGATGGCTCACGACAGAACCCTGAAGAAACTAGTTTTTTCCGTGCTGATGGTGGATGCTGGAATACTCCTTATGGTCGGATTTTCCTTGAGTGGTATTCAGGAATGCTGCTTCTTCATGGAGAGAGATTATGTATGGTTGCTGATGCTGCCTTCTCTGGT ]
[+] EMBL CA765785 [ GATNACCAATGCAGGCTTATTCAGACTTCATGAGGAGCTTTCGAGATGCTTTTAAAGAGTACCTTGGGGCTATAGTGACAGAAGTTCAAATTGGAATGGGCCCAGGAGGTGAACTTAGGTATCCATCATGCCCAACTGAGACACTAAGTCAAGCAGGCATCTCATCTGAACTCGGGGAGTTCCAATGTTATGACAAGTTCATGCAAGCATCCCTGAGTGCTCGTGCACAACTTATTGGCATGCAAGATTGGGGAAACGGTGGTCCAGCCGGCACAGATGGCTCACGACAGAACCCTGAAGAAACTAGTTTTTTCCGTGCTGATGGTGGATGCTGGAATACTCCTTATGGTCGGTTTTTCCTTGAGTGGTATTCAGGAATGCTGCTTCTTCATGGAGAGAGATTATGTATGGTTGCTGATGCTGTCTTCTCTGGTTCCGGTGTGACCATCGCCGGAAAGGTTTCTGGAATACATTGGCACTACTATACATGTTCGCACCCATCGGAACTGACTGCTGGTTACTACAACACATTGTTGAGGAACGGTTATCTTCCTATCACCCAAATGTTTGCTAGATACAAGGCTGCCTTGTGCCTGCAGTTGCTTTGACCTGAGGGATGAGGAGAGAAATAACTCCAAGAGCAGCCCAGAAGGTACTCTCCGGCAACTTATGGTCGCCGCCAAGATGTGCAATCTACCTCTGAACAGCGAAAACTCCGTGACAAGGCTCGACGATACGTCGCTGAATCAAGTC ]
[+] EMBL CA998514 [ GTTTTTTCCGTGCTGATGGTGGATGCTGGAATACTCCTTATGGTCGGTTTTTCCTTGAGTGGTATTCAGGAATGCTGCTTCTTCATGGAGAGAGATTATGTATGGTTGCTGATGCTGTCTTCTCTGGTTCCGGTGTGACCATCGCCGGAAAGGTTTCTGGAATACATTGGCACTACTATACATGTTCGCACCCATCGGAACTGACTGCTGGTTACTACAACACATTGTTGAGGAACGGTTATCTTCCTATCACCCAAATGTTTGCTAGATACAAGGCTGCCTTGTG CTGCAGTTGCTTTGACCTGAGGGATGAGGAGAGAAATAACTCCAAGAGCAGCCCAGAAGGTACTCTCCGGCAACTTATGGTCGCCGCCAAGATGTGCA ]
[-] EMBL CB653336 [ ATGCTGGAATACTCCTTATGGTCGGTTTTTCCTTGAGTGGTATTCAGGAATGCTGCTTCTTCATGGAGAGAGATTATGTATGGTTGCTGATGCTGTCTTCTCTGGTTCCGGTGTGACCATCGCCGGAAAGGTTTCTGGAATACATTGGCACTACTATACATGTTCGCACCCATCGGAACTGACTGCTGGTTACTACAACACATTGTTGAGGAACGGTTATCTTCCTATCACCCAAATGTTTGCTAGATACAAGGCTGCCTTGTG CTGCAGTTGCTTTGACCTGAGGGATGAGGAGAGAAATAACTCCAAGAGCAGCCCAGAAGGTACTCTCCGGCAACTTATGGTCGCCGCCAAGATGTGCAATCTACCTCTGAACGGCGAAAACTCCGTGACAAGGCTCGACGATACGTCGCTGAATCAAGTCATCAGAAGCTCAAGGCTCTACTCAGGTGGCACCTCAGGGACATCTTTCTCCTTCAACTATGTCAGAATGAACAAGAGCCTGTTTGAGTTTCACAACTGGAACAGGTTCACCAAGTTCGTCAGGCAGATGTCGGATGCCAGGACATTTCTAGCCAGGCTCGAGTTCAGGAGAGGGCAGCATTACCTCTCCTCGATGTCGGTTGTCTGGGTCGTCAGCCGGGCCTGTGCATAGACATGAATCAGAATTGGCAAAGTGACTGCTAGAAATGTAGTGTTGTTCGTGTATCTGTAACTTGGATCATGAATGTGATTCGACAGAATT GAAGAGA ]
[+] EMBL BE040154 [ ACCTCTGAACGGCGAAAACTCCGTGACAAGGCTCGACGATACGTCGCTGAATCAAGTCATCAGAAGCTCAAGGCTCTACTCAGGTGGCACCTCAGGGACATCTTTCTCCTTCAACTATGTCAGGATGAACAAGAGCCTGTTTGAGTTTCACAACTGGAACAGGTTCACCAAGTTCGTCAGGCAGATGTCGGATGCCAGGACATTTCTAGCCAGGCTCGAGTTCAGGAGAGGGCAGCATTACCTCTCCTCGATGTCGGTTGTCTGGGTCGTCAGCCGGGCCTGTGCATAGACATGAATCAGAATTGGCAAAGTGACTGCTAGAAATGTAGTGTTGTTCGTGTATCTGTAACTTGGATCATGAATGTGATTCGACAGAATTGGAAGAGAACTTTGTGCTCNNNANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_10623#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 455 fasta sequence
[ACCTCTGAACGGCGAAAACTCCGTGACAAGGCTCGACGATACGTCGCTGAATCAAGTCATCAGAAGCTCAAGGCTCTACTCAGGTGGCACCTCAGGGACATCTTTCTCCTTCAACTATGTCAGGATGAACAAGAGCCTGTTTGAGTTTCACAACTGGAACAGGTTCACCAAGTTCGTCAGGCAGATGTCGGATGCCAGGACATTTCTAGCCAGGCTCGAGTTCAGGAGAGGGCA-GCATTACCTCTCCTCGATGTCGGTTGTCTGGGTCGTCAGCCGGGCCTGTGCATAG-ACATGAATCAGAATTGGCAAAGTGACTGCTAGAAATGTAGTGTTGTTCGTGTATCTGTAACTTGGATCATGAATGTGATTCGACAGAATTGGAA-GAGAACTTTGTGCTCNNNNGANAAAATATAATCATTGGAAATTGAAAGGACTATGCAAAAACTGTATAGAAA]
[+] EMBL BE040151 [ACCTCTGAACGGCGAAAACTCCGTGACAAGGCTCGACGATACGTCGCTGAATCAAGTCATCAGAAGCTCAAGGCTCTACTCAGGTGGCACCTCAGGGACATCTTTCTCCTTCAACTATGTCAGGATGAACAAGAGCCTGTTTGAGTTTCACAACTGGAACAGGTTCACCAAGTTCGTCAGGCAGATGTCGGATGCCAGGACATTTCTAGCCAGGCTCGAGTTCAGGAGAGGGCA GCATTACCTCTCCTCGATGTCGGTTGTCTGGGTCGTCAGCCGGGCCTGTGCATAG ACATGAATCAGAATTGGCAAAGTGACTGCTAGAAATGTAGTGTTGTTCGTGTATCTGTAACTTGGATCATGAATGTGATTCGACAGAATTGGAA GAGAACTTTGTGCTCNNNNGANAAAATATAATCATTGGAAATTGAAAGGACTATGCAAAAACTGTATAGAAA]
[+] EMBL BM421873 [ TCAGGATGAACAAGAGCCTGTTTGAGTTTCACAACTGGAACAGGTTCACCAAGTTCGTCAGGCAGATGTCGGATGCCAGGACATTTCTAGCCAGGCTCGAGTTCAGGAGA GGCACGCATTACCTCTCCTCGATGTCGGTTGTCTGGGTCGTCAGCCGGGCCTGTGCATAGTACATGAATCAGAATTGGC AAGTGACTGCTAGAAATGTAGTGTTGTTCGTGTATCTGTAACTTGGATCATGAATGTGATTCGACAGAATTGGAACGAGNACTTTGTGCTC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10623#0 ACGACTGGCTGGGGTACCTCGAGCTCGCCGCCATGGCGCGCCGCTACGGCCTCCGCGTGC 60
consensus_10623#1 ------------------------------------------------------------
consensus_10623#0 GCGCCATCCTCGCCTTCCACCAGTGCGGCGCCGGCCCGCACGACCCTCCATGGATCCCTC 120
consensus_10623#1 ------------------------------------------------------------
consensus_10623#0 TACCTCAATGGGTACTTGAGGAGATGGATAAGTTGCCAGACTTGTCATATATGGATAGAT 180
consensus_10623#1 ------------------------------------------------------------
consensus_10623#0 ACCAACGAAGAAATAAAGAATACATCTCACTCGGGTGTGATATTCTTCCGATTCTGAAGG 240
consensus_10623#1 ------------------------------------------------------------
consensus_10623#0 GAAGATCACCAATGCAGGCTTATTCAGACTTCATGAGGAGCTTTCGAGATGCTTTTAAAG 300
consensus_10623#1 ------------------------------------------------------------
consensus_10623#0 AGTACCTTGGGGCTATAGTGACAGAAGTTCAAATTGGAATGGGCCCAGGAGGTGAACTTA 360
consensus_10623#1 ------------------------------------------------------------
consensus_10623#0 GGTATCCATCATGCCCAACTGAGACACTAAGTCAAGCAGGCATCTCATCTGAACTCGGGG 420
consensus_10623#1 ------------------------------------------------------------
consensus_10623#0 AGTTTCAATGTTATGACAAGTTCATGCAAGCATCCCTGAGTGCTCGTGCACAACTTATTG 480
consensus_10623#1 ------------------------------------------------------------
consensus_10623#0 GCATGCAAGATTGGGGAAACGGTGGTCCAACCGGCACAGATGGCTCACGACAGAACCCTG 540
consensus_10623#1 ------------------------------------------------------------
consensus_10623#0 AAGAAACTAGTTTTTTCCGTGCTGATGGTGGATGCTGGAATACTCCTTATGGTCGGTTTT 600
consensus_10623#1 ------------------------------------------------------------
consensus_10623#0 TCCTTGAGTGGTATTCAGGAATGCTGCTTCTTCATGGAGAGAGATTATGTATGGTTGCTG 660
consensus_10623#1 ------------------------------------------------------------
consensus_10623#0 ATGCTGTCTTCTCTGGTTCCGGTGTGACCATCGCCGGAAAGGTTTCTGGAATACATTGGC 720
consensus_10623#1 ------------------------------------------------------------
consensus_10623#0 ACTACTATACATGTTCGCACCCATCGGAACTGACTGCTGGTTACTACAACACATTGTTGA 780
consensus_10623#1 ------------------------------------------------------------
consensus_10623#0 GGAACGGTTATCTTCCTATCACCCAAATGTTTGCTAGATACAAGGCTGCCTTGTGCTGCA 840
consensus_10623#1 ------------------------------------------------------------
consensus_10623#0 GTTGCTTTGACCTGAGGGATGAGGAGAGAAATAACTCCAAGAGCAGCCCAGAAGGTACTC 900
consensus_10623#1 ------------------------------------------------------------
consensus_10623#0 TCCGGCAACTTATGGTCGCCGCCAAGATGTGCAATCTACCTCTGAACGGCGAAAACTCCG 960
consensus_10623#1 -------------------------------------ACCTCTGAACGGCGAAAACTCCG 23
***********************
consensus_10623#0 TGACAAGGCTCGACGATACGTCGCTGAATCAAGTCATCAGAAGCTCAAGGCTCTACTCAG 1020
consensus_10623#1 TGACAAGGCTCGACGATACGTCGCTGAATCAAGTCATCAGAAGCTCAAGGCTCTACTCAG 83
************************************************************
consensus_10623#0 GTGGCACCTCAGGGACATCTTTCTCCTTCAACTATGTCAGAATGAACAAGAGCCTGTTTG 1080
consensus_10623#1 GTGGCACCTCAGGGACATCTTTCTCCTTCAACTATGTCAGGATGAACAAGAGCCTGTTTG 143
**************************************** *******************
consensus_10623#0 AGTTTCACAACTGGAACAGGTTCACCAAGTTCGTCAGGCAGATGTCGGATGCCAGGACAT 1140
consensus_10623#1 AGTTTCACAACTGGAACAGGTTCACCAAGTTCGTCAGGCAGATGTCGGATGCCAGGACAT 203
************************************************************
consensus_10623#0 TTCTAGCCAGGCTCGAGTTCAGGAGAGGGCAGCATTACCTCTCCTCGATGTCGGTTGTCT 1200
consensus_10623#1 TTCTAGCCAGGCTCGAGTTCAGGAGAGGGCAGCATTACCTCTCCTCGATGTCGGTTGTCT 263
************************************************************
consensus_10623#0 GGGTCGTCAGCCGGGCCTGTGCATAGACATGAATCAGAATTGGCAAAGTGACTGCTAGAA 1260
consensus_10623#1 GGGTCGTCAGCCGGGCCTGTGCATAGACATGAATCAGAATTGGCAAAGTGACTGCTAGAA 323
************************************************************
consensus_10623#0 ATGTAGTGTTGTTCGTGTATCTGTAACTTGGATCATGAATGTGATTCGACAGAATTG-AA 1319
consensus_10623#1 ATGTAGTGTTGTTCGTGTATCTGTAACTTGGATCATGAATGTGATTCGACAGAATTGGAA 383
********************************************************* **
consensus_10623#0 GAGAACTTTGTGCTCNNNANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1379
consensus_10623#1 GAGAACTTTGTGCTCNNNNGANAAAATATAATCATTGGAAATTGAAAGGACTATGCAAAA 443
****************** * **** * ** * *** *** * * ****
consensus_10623#0 AAAAAAAAAAAAAA 1393
consensus_10623#1 ACTGTATAGAAA-- 455
* * * ***
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||