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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10635#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1400 fasta sequence
[TTTTTTTTTTGGAGTAGTAATACTCTAGTCAGTATTACCAAATGAAAATCTACTACAAGTCAAAGAACACACAATCTCTAATAAGAACACATCGTTCAGAAAACAATTCATTCTTAATCAAAA-GAAACATAAGGCACATGGGATATGTTGTCCCATTCAGGACCATAGTCGCCATACTTCTCCTT-CAGAA-TGGGGCAACCACTGATGCGCAGTTCAGT-CAGATTGTTCGGCAGGCAAGTCAAGGATT-CCATGTTAGG-ACAGTTGAT-CA-AGTGGAGGCTCTCAAGACCAA-GGACTC-GATCCATATTCTGTGGCAGTGATTTGATGCTGTTACAG-TTGATCAACTGCAGCTGCTCCA-GTGTATCCGGCAAATGGTCGGATTCCA-GCAATACATCGAGTGAGTTCAGTTCTTCGCTGTCTTCGATGATCAGGACTCTGAGAGCCTGGAGGCTAAGCAGAAATGGATCCATATGCGTTGCGACGCTGTCGATGTGCAGAGTGTGGAGTGATTGCATCACATTGCCTTCAGGCAGCTTCAGAGAACTGTGGCACTTCTCAATGTGCAGCTTCTCAACAATGCCGAGGGCACCTTCAATGGCCTTCAGTTCCTTGCACTCAGTTAATTCTAGCTGAAGTAGAGGCCCAGCACAGTGGCTAGAACTAGAAATATCATCCTCCGGAATTCGGAAAGTTGATAGGTTAGAGCAATATCGCAGAATGAACGTTTTAGATCTGTGCATGTCTCTATCTTCAACCCTATTGGGAGATCGGTCGGAAACATCAAGACTTTCACCAGAGGAAATAGCTGATTCCATCCGAGGAGAATCGAAGGATCTCAACTGCACCCCCTCTATTCTGATCTTTTTAACTCTAGCATGAAGACGAGGCAAAACAGTGAGCTCCGGGCAGTTCCTTACTGTAAATTCCTCAAGGCAGGGAAAGCATGGTTCTTGCATTGTCCAATCTTCTAGTGATGGCATATCCTCAATGCAAAGCTTCACTAATGCCGGGAAGTGGCATGCGGTGGAAGAATATGTACGATCAGATTCTGACATTGTTTTCAACATTGAATGTCTTTCTAAAGTCAGCACTTCCAAATTTGGAAGCTTGGCCAAAGGGGCAAACACACTGACAAAAAAGCAGTTCCTCAATGTGATTATCTTCATATTTATCAGTTGATCTTCAGTAAACCAGGTGGGAGTATTGATGCCTGGGTACCCATTGATTTCCAGTTCACTGAGGGACTCCGGTGGTTTGAGCCGTTCAAGAACTTCTTCGCTTAAAAGTTGCGATGTTTCTGTGGAATGCCATTCTAGTTTCAGAGAAACAAGAGAAGTTTTCAAGCTTAAATTAACCTTAGCTGCATTGTTTGCAATCGTCACGTTCTCGAGGTTTGTAATAGA]
[-] EMBL BI813365 [TTTTTTTTTTGGAGTAGTAATACTCTAGTCAGTATTACCAAATGACAATCTACTACAAGTCAAAGAACACACAATCTCTAATAAGAACACATCGTTCAGAAAACAATTCATTCTTAATCAAAACGAAACATAAGGCACATGGGATATGTTGTCCCATTCAGGACCATAGTCGCCATACTTCTCCTT CAGAA TGGGGCAACCACTGATGCGCAGTTCAGT CAGATTGTTCGGCAGGCAAGTCAAGGATT CCATGTTAGG ACAGTTGAT CACAGTGGAGGCTCTCAAGACCAA GGGCTC GATCCATATTCTGTGGCAGTGATTTGATGCTGTTACAGTTTGATCAACTG AGCTGCTCCAGGTGTATCCGGCAAATGGTCGGATTCCACGCAATACA ]
[-] EMBL BM038975 [ TTTTTTTTT TAGTAATACTCTAGTCAGTATTACCAAATGAAAATCTACTACAAGTCAAAGAACACACAATCTCTAATAAGAACACATCGTTCAGAAAACAATTCATTCTTAATCAAAA GAAACATAAGG ACATGGGATATGTTGTCCCATTCAGGACCATAGTCGCCATACTTCTCCTTCCAGAAGTGGGGCAACCACTGATGCGCAGTTCAGTCCAGATTGTTCGGCAGG AAGTCAAGGATTCCCATGTTAGGCACAGTTGATCCA AGTGGAGGCTCTCAAGAACAAGGGACTCTGATCCATATTCTGT ]
[+] EMBL CB623027 [ GTCAGTATTACCAAATGAAAACCTACTACAAGTCAAAGAACACACAATCTCTAATAAGAACACATCGTTCAGAAAACAATTCATTCTTAATCAAAA GAAACATAAGGCACATGGGATATGTTGTCCCATTCAGGACCATAGTCGCCATACTTCTCCTT CAGAA TGGGGCAACCACTGATGCGCAGTTCAGT CAGATTGTTCGGCAGGCAAGTCAAGGATT CCATGTTAGG ACAGTTGAT CA AGTGGAGGCTCTCAAGACCAA GGACTC GATCCATATTCTGTGGCAGTGATTTGATGCTGTTACAG TTGATCAACTGCAGCTGCTCCA GTGTATCCGGCAAATGGTCGGATTCCA GCAATACATCGAGTGAGTTCAGTTCTTCGCTGTCTTCGATGATCAGGACTCTGAGAGCCTGGAGGCTAAGCAGAAATGGATCCATATGCGTTGCGACGCTGTCGATGTGCAGAGTGTGGAGTGATTGCATCACATTGCCTTCAGGCAGCTTCAGAGAACTGTGGCACTTCTCAATGTGCAGCTTCTCAACAATGCCGAGGGCACCTTCAATGGCCTTCAGTTCCTTGCACTCAGTTAATTCTAGCTGAAGTAGAGGCCCAGCACAGTGGCTAGAACTAGAAATATCATCCTCCGGAATTCGGAAAGTTGATAGGTTAGAGCAATATCGCAGAATGAACGTTTTAGATCTGTGCATGTCTCTATCTTCAACCCTATTGGGAGATCGGTCGGAAACATCAAGACTTTCACCAGAGGAAATAGCTGATTCCATCCGAGGAGAATCGAAGGATCTCAACTGCACCCCCTCTATTCTGATCTTTTTAACTCTAGCATGAAGACGAGGC ANACAGTGAGCTCCGG ]
[+] EMBL CB623029 [ TCAGTATTACCAAATGAAAATCCTTTACAAGTCAAAGAACACACAATCTCTAATAAGAACACATCGTTCAGAAAACAATTCATTCTTAATCAAAA GAAACATAAGGCACATGGGATATGTTGTCCCATTCAGGACCATAGTCGCCATACTTCTCCTT CAGAA TGGGGCAACCACTGATGCGCAGTTCAGT CAGATTGTTCGGCAGGCAAGTCAAGGATT CCATGTTAGG ACAGTTGAT CA AGTGGAGGCTCTCAAGACCAA GGACTC GATCCATATTCTGTGGCAGTGATTTGATGCTGTTACAG TTGATCAACTGCAGCTGCTCCA GTGTATCCGGCAAATGGTCGGATTCCA GCAATACATCGAGTGAGTTCAGTTCTTCGCTGTCTTCGATGATCAGGACTCTGAGAGCCTGGAGGCTAAGCAGAAATGGATCCATATGCGTTGCGACGCTGTCGATGTGCAGAGTGTGGAGTGATTGCATCACATTGCCTTCAGGCAGCTTCAGAGAACTGTGGCACTTCTCAATGAGCAGCTTCTCAACAATGCCGAGGGCACCTTCAATGGCCTTCAGTTCCTTGCACTCAGTTAATTCTAGCTGAAGTAGAGGCCCAGCACAGTGGCTAGAACTAGAAATATCATCCTCCGGAATTCGGAGAGTTGATAGGTTAGAGCAATATCGCAGAATGAACGTTTTAGATCTGTGCATGTCTCTATCTTCAACCCTATTGGGAGATCGGTCGGAA ]
[-] EMBL CB623026 [ CACTCAGTTAATTCTAGCTGAAGTAGAGGCCCAGCACAGTGGCTAGAACTAGAAATATCATCCTCCGGAATTCGGAAAGTTGATAGGTTAGAGCAATATCGCAGAATGAACGTTTTAGATCTGTGCATGTCTCTATCTTCAACCCTATTGGGAGATCGGTCGGAAACATCAAGACTTTCACCAGAGGAAATAGCTGATTCCATCCGAGGAGAATCGAAGGATCTCAACTGCACCCCCTCTATTCTGATCTTTTTAACTCTAGCATGAAGACGAGGCAAAACAGTGAGCTCCGGGCAGTTCCTTACTGTAAATTCCTCAAGGCAGGGAAAGCATGGTTCTTGCATTGTCCAATCTTCTAGTGATGGCATATCCTCAATGCAAAGCTTCACTAATGCCGGGAAGTGGCATGCGGTGGAAGAATATGTACGATCAGATTCTGACATTGTTTTCAACATTGAATGTCTTTCTAAAGTCAGCACTTCCAAATTTGGAAGCTTGGCCAAAGGGGCAAACACACTGACAAAAAAGCAGTTCCTCAATGTGATTATCTTCATATTTATCAGTTGATCTTCAGTAAACCAGGTGGGAGTATTGATGCCTGGGTACCCATTGATTTCCAGTTCACTGAGGGACTCCGGTGGTTTGAGCCGTTCAAGAACTTCTTCGCTTAAAAGTTGCGATGTTTCTGTGGAATGCCATTCTAGTTTCAGAGAAACAAGAGAAGTTTTCAAGCTTAAATTAACCTTAGCTGCATTGTTTGCAATCGTCACGTTCTCGAGGTTTGTAATAGA]
[-] EMBL CB623028 [ CTAGCTGAAGTAGAGGCCCAGCACAGTGGCTAGAACTAGAAATATCATCCTCCGGAATTCGGAAAGTTGATAGGTTAGAGCAATATCGCAGAATGAACGTTTTAGATCTGTGCATGTCTCTATCTTCAACCCTATTGGGAGATCGGTCGGAAACATCAAGACTTTCACCAGAGGAAATAGCTGATTCCATCCGAGGAGAATCGAAGGATCTCAACTGCACCCCCTCTATTCTGATCTTTTTAACTCTAGCATGAAGACGAGGCAAAACAGTGAGCTCCGGGCAGTTCCTTACTGTAAATTCCTCAAGGCAGGGAAAGCATGGTTCTTGCATTGTCCAATCTTCTAGTGATGGCATATCCTCAATGCAAAGCTTCACTAATGCCGGGAAGTGGCATGCGGTGGAAGAATATGTACGATCAGATTCTGACATTGTTTTCAACATTGAATGTCTTTCTAAAGTCAGCACTTCCAAATTTGGAAGCTTGGCCAAAGGGGCAAACACACTGACAAAAAAGCAGTTCCTCAATGTGATTATCTTCATATTTATCAGTTGATCTTCAGTAAACCAGGTGGGAGTATTGATGCCTGGGTACCCATTGATTTCCAGTTCACTGAGGGACTCCGGTGGTTTGAGCCGTTCAAGAACTTCTTCGCTTAAAAGTTGCGATGTTTCTGTGGAATGCCATTCTAGTTTCAGAGAAACAAGAGAAGTTTTCAAGCTTAAATTAACCTTAGCTGCATTGTTTGCAATCGTCACGTTCTCGAGGTTTGTAATAGA]
consensusID : consensus_10635#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence
[CCAAGGAACACACAATCTCTAATTAAGAACCACCATCGTTCCAGCAAAACAATTCCATTCTTTAATCCAAAAGAAACATAAGGGCCATGGGATATGTTGTCCCCATTCAGGGACCATAGTCGGCCATACTTCTCCTTCGAATGGGGGGACCACTGGATGCGCAGTTCAGTCCAGATAGTTCGGCCAGGCCAAGTCAAGATTCCCTGTTCAGGCACCGTTGATCCAAGTGGAGGCTCTCAAGAACAAGGACTCGATCCATATTCTGTGGAGGTGATTTTGATGCTGTTACCGTTGATCACCTGAGCTGCTCCAGTGTATCCGGCAAATGGTCGGATTCCAGCACTACCTCGAGGTGAGTTCAGTTCTTCGCGTGTCTTCGATGATCAGGACTCTGAGAGCCTGGGAGGTAAGCCGAAATGGATCCATAATGCGTTGCGGACGCTGTCGATGTGCACAGCTGTGGCA]
[-] EMBL BI810750 [CCAAGGAACACACAATCTCTAATTAAGAACCACCATCGTTCCAGCAAAACAATTCCATTCTTTAATCCAAAAGAAACATAAGGGCCATGGGATATGTTGTCCCCATTCAGGGACCATAGTCGGCCATACTTCTCCTTCGAATGGGGGGACCACTGGATGCGCAGTTCAGTCCAGATAGTTCGGCCAGGCCAAGTCAAGATTCCCTGTTCAGGCACCGTTGATCCAAGTGGAGGCTCTCAAGAACAAGGACTCGATCCATATTCTGTGGAGGTGATTTTGATGCTGTTACCGTTGATCACCTGAGCTGCTCCAGTGTATCCGGCAAATGGTCGGATTCCAGCACTACCTCGAGGTGAGTTCAGTTCTTCGCGTGTCTTCGATGATCAGGACTCTGAGAGCCTGGGAGGTAAGCCGAAATGGATCCATAATGCGTTGCGGACGCTGTCGATGTGCACAGCTGTGGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10635#0 TTTTTTTTTTGGAGTAGTAATACTCTAGTCAGTATTACCAAATGAAAATCTACTACAAGT 60
consensus_10635#1 -----------------------------------------------------------C 1
consensus_10635#0 CAAAGAACACACAATCTCTAAT-AAGAACA--CATCGTTCAG--AAAACAATTC-ATTCT 114
consensus_10635#1 CAAGGAACACACAATCTCTAATTAAGAACCACCATCGTTCCAGCAAAACAATTCCATTCT 61
*** ****************** ****** ******** ********** *****
consensus_10635#0 TAA--TCAAAAGAAACATAAGGCACATGGGATATGTTGTCCC-ATTCAGG-ACCATAGTC 170
consensus_10635#1 TTAATCCAAAAGAAACATAAGGGCCATGGGATATGTTGTCCCCATTCAGGGACCATAGTC 121
* * **************** ****************** ******* *********
consensus_10635#0 G-CCATACTTCTCCTTCAGAATGGGGCAACCACTG-ATGCGCAGTTCAGTC-AGATTGTT 227
consensus_10635#1 GGCCATACTTCTCCTTC-GAATGGGGGGACCACTGGATGCGCAGTTCAGTCCAGATAGTT 180
* *************** ******** ******* *************** **** ***
consensus_10635#0 CGGC-AGGCAAGTCAAGGATTCCATGTTAGGACA--GTTGATC-AAGTGGAGGCTCTCAA 283
consensus_10635#1 CGGCCAGGCCAAGTCAAGATTCCCTGTTCAGGCACCGTTGATCCAAGTGGAGGCTCTCAA 240
**** **** * * ****** **** * ** ******* ****************
consensus_10635#0 GACCAAGGACTCGATCCATATTCTGTGGCAGTGATTT-GATGCTGTTACAGTTGATCAAC 342
consensus_10635#1 GAACAAGGACTCGATCCATATTCTGTGGAGGTGATTTTGATGCTGTTACCGTTGATCACC 300
** ************************* ******* *********** ******** *
consensus_10635#0 TGCAGCTGCTCCAGTGTATCCGGCAAATGGTCGGATTCCAGCAATACATCGAG-TGAGTT 401
consensus_10635#1 TG-AGCTGCTCCAGTGTATCCGGCAAATGGTCGGATTCCAGCACTACCTCGAGGTGAGTT 359
** **************************************** *** ***** ******
consensus_10635#0 CAGTTCTTCGC-TGTCTTCGATGATCAGGACTCTGAGAGCCTGGAGGCTAAGCAGAAATG 460
consensus_10635#1 CAGTTCTTCGCGTGTCTTCGATGATCAGGACTCTGAGAGCCTGGGAGGTAAGCCGAAATG 419
*********** ******************************** * ***** ******
consensus_10635#0 GATCCATA-TGCGTTGCG-ACGCTGTCGATGTGCAGAG-TGTGGAGTGATTGCATCACAT 517
consensus_10635#1 GATCCATAATGCGTTGCGGACGCTGTCGATGTGCACAGCTGTGGCA-------------- 465
******** ********* **************** ** *****
consensus_10635#0 TGCCTTCAGGCAGCTTCAGAGAACTGTGGCACTTCTCAATGTGCAGCTTCTCAACAATGC 577
consensus_10635#1 ------------------------------------------------------------
consensus_10635#0 CGAGGGCACCTTCAATGGCCTTCAGTTCCTTGCACTCAGTTAATTCTAGCTGAAGTAGAG 637
consensus_10635#1 ------------------------------------------------------------
consensus_10635#0 GCCCAGCACAGTGGCTAGAACTAGAAATATCATCCTCCGGAATTCGGAAAGTTGATAGGT 697
consensus_10635#1 ------------------------------------------------------------
consensus_10635#0 TAGAGCAATATCGCAGAATGAACGTTTTAGATCTGTGCATGTCTCTATCTTCAACCCTAT 757
consensus_10635#1 ------------------------------------------------------------
consensus_10635#0 TGGGAGATCGGTCGGAAACATCAAGACTTTCACCAGAGGAAATAGCTGATTCCATCCGAG 817
consensus_10635#1 ------------------------------------------------------------
consensus_10635#0 GAGAATCGAAGGATCTCAACTGCACCCCCTCTATTCTGATCTTTTTAACTCTAGCATGAA 877
consensus_10635#1 ------------------------------------------------------------
consensus_10635#0 GACGAGGCAAAACAGTGAGCTCCGGGCAGTTCCTTACTGTAAATTCCTCAAGGCAGGGAA 937
consensus_10635#1 ------------------------------------------------------------
consensus_10635#0 AGCATGGTTCTTGCATTGTCCAATCTTCTAGTGATGGCATATCCTCAATGCAAAGCTTCA 997
consensus_10635#1 ------------------------------------------------------------
consensus_10635#0 CTAATGCCGGGAAGTGGCATGCGGTGGAAGAATATGTACGATCAGATTCTGACATTGTTT 1057
consensus_10635#1 ------------------------------------------------------------
consensus_10635#0 TCAACATTGAATGTCTTTCTAAAGTCAGCACTTCCAAATTTGGAAGCTTGGCCAAAGGGG 1117
consensus_10635#1 ------------------------------------------------------------
consensus_10635#0 CAAACACACTGACAAAAAAGCAGTTCCTCAATGTGATTATCTTCATATTTATCAGTTGAT 1177
consensus_10635#1 ------------------------------------------------------------
consensus_10635#0 CTTCAGTAAACCAGGTGGGAGTATTGATGCCTGGGTACCCATTGATTTCCAGTTCACTGA 1237
consensus_10635#1 ------------------------------------------------------------
consensus_10635#0 GGGACTCCGGTGGTTTGAGCCGTTCAAGAACTTCTTCGCTTAAAAGTTGCGATGTTTCTG 1297
consensus_10635#1 ------------------------------------------------------------
consensus_10635#0 TGGAATGCCATTCTAGTTTCAGAGAAACAAGAGAAGTTTTCAAGCTTAAATTAACCTTAG 1357
consensus_10635#1 ------------------------------------------------------------
consensus_10635#0 CTGCATTGTTTGCAATCGTCACGTTCTCGAGGTTTGTAATAGA 1400
consensus_10635#1 -------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||