These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10636#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 875 fasta sequence [TCTCTCTCTCTCCCAATTATATTTGTAGAGAGAGGGAAGAAAAGAAGAGAGGGGAGGAGCAATGGCAGGGTCTGAGGAGAAGAAGGAGATGCAAGACCCCAGGACACAGGCCATAGCATCCACCATTAGAGTTGTGCCCAACTTCCCTAAGCCAGGAATAATGTTCCAAGATATCACGACCCTACTTCTAAATCCCCCTGTGTTCAAGGACACCATCGACTTGTTCGTTGAACGGTACACTGGCAAAGGCATCTCCGTTGTTGCTGGGGTCGAAGCTAGAGGG-TTTA-TTTTCGGTCCTCCCATAGCGCTCGCTATTGGTGCAAAATTTATCCCA-CTAAGAAAACCTAACAAACTTCCAGGTGAGGTGATGTCA-AAGGAGTACGAGCTGGAGTATGGCGCCGACTGCTTGGAAATGCACGTCGGCGCGGTACAGCCCGGCGAGCGAGCACTCGTCGTCGACGACCTCGTCGCCACCGGCGGCACGCTCTGTGCCGCCATCGTCTTGCTTGAGCGTGCTGGTGCAGAAGTGGTGGAGTGTGCATGTGTGATTGAGCTCCCGGAACTGAAGGGTCGTGAGAGGCTCAATGGGAAGCCACTGTACGTTCTGGTGGAGTCTCACTCCTAGCTTAGCTACATATATACCACTCTAGCTGCAGAATTTAATTCTTCTTCTTGGTGCATTCCACTATTCTGTCCATGTGTAGTTTAATTTTGTGTCTGCTTAAAATTCAGCACTCAGTGTGTAAGTGTACAACTCTAATGGATGGCAACTCTGCTGATCGCGGTGTGGGTGTAGTAACATCTTTCTTCCGTGGATTCGTTTTTTTTATTTGAATCGCTTTAGGTGTGTCCTTTCCA------AAAAAAAAAAAAAAAGG] [+] EMBL AK108481 [TCTCTCTCTCTCCCAATTATATTTGTAGAGAGAGGGAAGAAAAGAAGAGAGGGGAGGAGCAATGGCAGGGTCTGAGGAGAAGAAGGAGATGCAAGACCCCAGGACACAGGCCATAGCATCCACCATTAGAGTTGTGCCCAACTTCCCTAAGCCAGGAATAATGTTCCAAGATATCACGACCCTACTTCTAAATCCCCCTGTGTTCAAGGACACCATCGACTTGTTCGTTGAACGGTACACTGGCAAAGGCATCTCCGTTGTTGCTGGGGTCGAAGCTAGAGGG TTTA TTTTCGGTCCTCCCATAGCGCTCGCTATTGGTGCAAAATTTATCCCA CTAAGAAAACCTAACAAACTTCCAGGTGAGGTGATGTCG AAGGAGTACGAGCTGGAGTATGGCGCCGACTGCTTGGAAATGCACGTCGGCGCGGTACAGCCCGGCGAGCGAGCACTCGTCGTCGACGACCTCGTCGCCACCGGCGGCACGCTCTGTGCCGCCATCGTCTTGCTTGAGCGTGCTGGTGCAGAAGTGGTGGAGTGTGCATGTGTGATTGAGCTCCCGGAACTGAAGGGTCGTGAGAGGCTCAATGGGAAGCCACTGTACGTTCTGGTGGAGTCTCACTCCTAGCTTAGCTACATATATACCACTCTAGCTGCAGAATTTAATTCTTCTTCTTGGTGCATTCCACTATTCTGTCCATGTGTAGTTTAATTTTGTGTCTGCTTAAAATTCAGCACTCAGTGTGTAAGTGTACAACTCTAATGGATGGCAACTCTGCTGATCGCGGTG ] [+] EMBL CB658255 [ AGAGGGGAGGAGCAATGGCAGGGTCTGAGGAGAAGAAGGAGATGCAAGACCCCAGGACACAGGCCATAGCATCCACCATTAGAGTTGTGCCCAACTTCCCTAAGCCAGGAATAATGTTCCAAGATATCACGACCCTACTTCTAAATCCCCCTGTGTTCAAGGACACCATCGACTTGTTCGTTGAACGGTACACTGGCAAAGGCATCTCCGTTGTTGCTGGGGTCGAAGCTAGAGGG TTTA TTTTCGGTCCTCCCATAGCGCTCGCTATTGGTGCAAAATTTATCCCA CTAAGAAAACCTAACAAACTTCCAGGTGAGGTGATGTCA AAGGAGTACGAGCTGGAGTATGGCGCCGACTGCTTGGAAATGCACGTCGGCGCGGTACAGCCCGGCGAGCGAGCACTCGTCGTCGACGACCTCGTCGCCACCGGCGGCACGCTCTGTGCCGCCATCGTCTTGCTTGAGCGTGCTGGTGCAGAAGTGGTGGAGTGTGCATGTGTGATTGAGCTCCCGGAACTGAAGGGTCGTGAGAGGCTCAATGGGAAGCCACTGTACGTTCTGGTGGAGTCTCACTCCTAGCTTAGCTACATATATACCACTCTAGCTGCAGAATTTAATTCTTCTTCTTGGTGCATTCCACTATTCTGTCCATGTGTAGTTTAATTTTGTGTCTGCTTAAAATTCAGCACTCAGTGTGTAAGTGTACAACTCTAATGGATGGCAACTCTGCTGATCGCGGTGTGGGTGTAGTAA ] [-] EMBL CB658256 [ ATCCACCATTAGAGTTGTGCCCAACTTCCTTAAGCCAGGAATAATGTTCCAAGATATCACGACCCTACTTCTAAATCCCCCTGTGTTCAAGGACACCATCGACTTGTTCGTTGAACGGTACACTGGCAAAGGCATCTCCGTTGTTGCTGGGGTCGAAGCTAGAGGG TTTA TTTTCGGTCCTCCCATAGCGCTCGCTATTGGTGCAAAATTTATCCCA CTAAGAAAACCTAACAAACTTCCAGGTGAGGTGATGTCA AAGGAGTACGAGCTGGAGTATGGCGCCGACTGCTTGGAAATGCACGTCGGCGCGGTACAGCCCGGCGAGCGAGCACTCGTCGTCGACGACCTCGTCGCCACCGGCGGCACGCTCTGTGCCGCCATCGTCTTGCTTGAGCGTGCTGGTGCAGAAGTGGTGGAGTGTGCATGTGTGATTGAGCTCCCGGAACTGAAGGGTCGTGAGAGGCTCAATGGGAAGCCACTGTACGTTCTGGTGGAGTCTCACTCCTAGCTTAGCTACATATATACCACTCTAGCTGCAGAATTTAATTCTTCTTCTTGGTGCATTCCACTATTCTGTCCATGTGTAGTTTAATTTTGTGTCTGCTTAAAATTCAGCACTCAGTGTGTAAGTGTCCAACTTTAATGGATGGCAACTCTGCTGATCGCGGTGTGGGTGTAGTAACATCTTTCTTCCGTGGATTCGTTTTTTTTATTTGAATCGCTTTAGGTGTGTCCTTTCCA AAAAAAAAAAAAAAAGG] [-] EMBL CA760383 [ ACTTCTAAATCCCCCTGTG TCGAGGACACCATCGACTTGTTCGTTGAACGGTACACTGGCAAAGGCATTTCCGTTGTTGCTGGGGTCGAAGCTAGAGGG TTTA TNTTCGGTCCTCCCATAGCGCTCGCTATTGGTGCAAAATTTATCCCA CTAAGAAAACCTAACAAACTTCCAGGTGAGGTGATGTCA AAGGAGTACGAGCTGGAGTATGGCGCCGACTGCTTGGAAATGCACGTCGGCGCGGTACAGCCCAGCGAGCGAGCGCTTGTCGTCGACGACCTTGTCGCCACCGGCGGCACGCTCTGTGCCGCCATTGTCTTGCTTGAGCGTGCTGGTGCAGAAGTGGTGGAGTGTGCATGTGTGATTGAGCTCCCGGAACTGAAGGGTCGTGAGAGGCTCAATGGGAAGCCACTGTACGTTCTGGTGGGGTCTCACTCCTAGCTTAGCTACATATATACCACTCTAGCTGCAGAATTTGATTCTTTTTCTTGGTGCATTCCACTATTCTGTCCATGTGTAGTTTAATTTTGTGTCTGCTTAAAATTCAGCACTCAGTGTGTAAGTGTATGACTCTAATGGATGGCAACTTTGCTGATCGCGGTGTGGGTGTAGTAACATCTTTCTTCCGTGGATTCGTTTTTTTTATTTCAATCGCTTTAGGTGTGTCCTTTCCATGCTTCAAAAAAAAAA ] [+] EMBL BI811746 [ GTCGAAGCTAGAGGGTTTTATTTTTCGGTCCTCCCATAGCGCTCGCTATTGGTGC AAATTTATCCCACCTAAGAAAACCTAAC AACTT CAGGTGAGGTGATGTCACAAGGAGTACGAGCTGGAGTATGGCGCCGACTGCTTGGAAATGCACGTCGGC CGGTACAGCCCAGCGAGCGAGCGCTCGTCGTCGACGACCTCGTCGCCACCGGCGGCACGCTCTGTGCC CCATCGTCTTGCTTGAGCGTGCTGGTGCAGAA TGGTGGAGTGTGCATGTGTGATTGAGCTCCCGGAACTGAAGGGTCGTGAGAGGCTCAATGGGAAGCC CTGTACGTTCTGGTGGAGTCTCACTCCTAGCTTAGCTACATATATACCACTCTAGCTGCAGAATTTGATTCTTCTTCTTGGTGCATTCCACTATTCTGTCCATGTGTAGTTTAATTTTGTGTCTGCTTAAAATTCAGCACTCAGTGTGTAAGTGTATGACTCTAATGGATGGC ACTCTGCTGATCGCGGTGTGGGTGTAGTAACATCTTTCTTCCGTGGATTCGTTTTTTTTAaaaaaa ] consensusID : consensus_10636#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence [GAGCAATGGCAGTGTCTGAGGAGAAGAAGGAGATGCAAGACCCCAGGACACAGGCCATAGCATCCACCATNAGAGTTGTGCCCAACTTCCCTAAGCCAGGAATAATGTTCCAAGATATCACGACCCTACTTCTAAATCCCCCTGTGTTCAAGGACACCATCGACTTGTTCGTTGAACGGTACACTGGCAAAGGCATTTCCGTTGTTGCTGGGTGATAGGTGGCAATCTAAAGAGGAGGAATTCAATCCATTGGAAAACATTCCTATGAAATTAAAGTTTTCAGATGTAGCATTGCTTCAAAGTAATTTCATAGGATATAAAATTCCTCCATGATTTGGAGAAATTGTAGCATAATTAAGGTCTAACATAATGTTCACAAATACCTTTGATTAAAATTCATAGGCACCTTCTTAATTTTCTTTCTCCCTAATAAATCTAGATACATACTTTTAAATTTATTGTAATTTTCTTATCAGGTTCTCCCTCTGTCCCAAAATATTTTGAAAATTGGGATGGATGGGATGTATTCTAGTACTACAGATCTGGTCATACTTGTCTAGATTTATAGTACTAGGATACGTCATATCCAACCAAAATATTTTATATTTAGGGACAGAGAGAGTATCAAACAACTACTTTGTGCAATTCCAACACTGCTCCTGTGATTTTCCTATTTCTAAAAAAAAAAAAAAAAA] [-] EMBL CA759597 [GAGCAATGGCAGTGTCTGAGGAGAAGAAGGAGATGCAAGACCCCAGGACACAGGCCATAGCATCCACCATNAGAGTTGTGCCCAACTTCCCTAAGCCAGGAATAATGTTCCAAGATATCACGACCCTACTTCTAAATCCCCCTGTGTTCAAGGACACCATCGACTTGTTCGTTGAACGGTACACTGGCAAAGGCATTTCCGTTGTTGCTGGGTGATAGGTGGCAATCTAAAGAGGAGGAATTCAATCCATTGGAAAACATTCCTATGAAATTAAAGTTTTCAGATGTAGCATTGCTTCAAAGTAATTTCATAGGATATAAAATTCCTCCATGATTTGGAGAAATTGTAGCATAATTAAGGTCTAACATAATGTTCACAAATACCTTTGATTAAAATTCATAGGCACCTTCTTAATTTTCTTTCTCCCTAATAAATCTAGATACATACTTTTAAATTTATTGTAATTTTCTTATCAGGTTCTCCCTCTGTCCCAAAATATTTTGAAAATTGGGATGGATGGGATGTATTCTAGTACTACAGATCTGGTCATACTTGTCTAGATTTATAGTACTAGGATACGTCATATCCAACCAAAATATTTTATATTTAGGGACAGAGAGAGTATCAAACAACTACTTTGTGCAATTCCAACACTGCTCCTGTGATTTTCCTATTTCTAAAAAAAAAAAAAAAAA] consensusID : consensus_10636#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence [TCTGACCCTAAGAAGGAGATGCAAGACCCCAGGACACAGGCCATAGCATCCACCATTAGAGTTGTGCCCAACTTCCCTATCCCAGGAATAATGTTCCAAGATATCACGACCCTACTTCTAAATCCCCCTGTGTTCAAGGACACCATCGACTTGTTCGTTGAACGGTACACTGGCAAAGGCATCTCCGTTGTTGCTGGTAACATATAATTGTTTTGTTTTTTATCTCAAAAAATTGAAAAAATCAAGATTTATTTGAACTTGTGCGCTTTGTATATTCAAGTACTCCATCCGTCCCTTAATTAATATAAGGGATTTTGATATTTTGCTTGCACTGTTTTAATCACTCGTCTTATTAAAAAAAAATTGTGCAAATATAAAAACGAAAAGTTGTGCTTAAAGTACTTTGAGTAATAAAGTAAGTCACAAATAAAATAAATAATAGTTTTAATTTTTTAATAAGACGAATGTTCAAACAGTACAAAGTAAAATGTCAAAATCTCTTATATTAAGGGACGGAGGGAGTAGTAACTAATCTGATCTTTATCTCAAAAAAATATCAGATCTTATCACATCCATTGAAATATATAATTCATTTCTTTAATACTAAGTCAGAGTTATTATTTATGAAAATCCCAATATAGTCAATTAAAAGCGTGA] [+] EMBL CB635801 [TCTGACCCTAAGAAGGAGATGCAAGACCCCAGGACACAGGCCATAGCATCCACCATTAGAGTTGTGCCCAACTTCCCTATCCCAGGAATAATGTTCCAAGATATCACGACCCTACTTCTAAATCCCCCTGTGTTCAAGGACACCATCGACTTGTTCGTTGAACGGTACACTGGCAAAGGCATCTCCGTTGTTGCTGGTAACATATAATTGTTTTGTTTTTTATCTCAAAAAATTGAAAAAATCAAGATTTATTTGAACTTGTGCGCTTTGTATATTCAAGTACTCCATCCGTCCCTTAATTAATATAAGGGATTTTGATATTTTGCTTGCACTGTTTTAATCACTCGTCTTATTAAAAAAAAATTGTGCAAATATAAAAACGAAAAGTTGTGCTTAAAGTACTTTGAGTAATAAAGTAAGTCACAAATAAAATAAATAATAGTTTTAATTTTTTAATAAGACGAATGTTCAAACAGTACAAAGTAAAATGTCAAAATCTCTTATATTAAGGGACGGAGGGAGTAGTAACTAATCTGATCTTTATCTCAAAAAAATATCAGATCTTATCACATCCATTGAAATATATAATTCATTTCTTTAATACTAAGTCAGAGTTATTATTTATGAAAATCCCAATATAGTCAATTAAAAGCGTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10636#0 TCTCTCTCTCTCCCAATTATATTTGTAGAGAGAGGGAAGAAAAGAAGAGAGGGGAGGAGC 60 consensus_10636#1 --------------------------------------------------------GAGC 4 consensus_10636#2 ------------------------------------------------------------ consensus_10636#0 AATGGCAGGGTCTGAGGAGAAGAAGGAGATGCAAGACCCCAGGACACAGGCCATAGCATC 120 consensus_10636#1 AATGGCAGTGTCTGAGGAGAAGAAGGAGATGCAAGACCCCAGGACACAGGCCATAGCATC 64 consensus_10636#2 ----------TCTGACCCTAAGAAGGAGATGCAAGACCCCAGGACACAGGCCATAGCATC 50 ***** ***************************************** consensus_10636#0 CACCATTAGAGTTGTGCCCAACTTCCCTAAGCCAGGAATAATGTTCCAAGATATCACGAC 180 consensus_10636#1 CACCATNAGAGTTGTGCCCAACTTCCCTAAGCCAGGAATAATGTTCCAAGATATCACGAC 124 consensus_10636#2 CACCATTAGAGTTGTGCCCAACTTCCCTATCCCAGGAATAATGTTCCAAGATATCACGAC 110 ****** ********************** ***************************** consensus_10636#0 CCTACTTCTAAATCCCCCTGTGTTCAAGGACACCATCGACTTGTTCGTTGAACGGTACAC 240 consensus_10636#1 CCTACTTCTAAATCCCCCTGTGTTCAAGGACACCATCGACTTGTTCGTTGAACGGTACAC 184 consensus_10636#2 CCTACTTCTAAATCCCCCTGTGTTCAAGGACACCATCGACTTGTTCGTTGAACGGTACAC 170 ************************************************************ consensus_10636#0 TGGCAAAGGCATCTCCGTTGTTGCTGGG------GTCG-AAGCTAGAGGGTTTATTTTCG 293 consensus_10636#1 TGGCAAAGGCATTTCCGTTGTTGCTGGGTGATAGGTGGCAATCTAAAGAGGAGGAATTCA 244 consensus_10636#2 TGGCAAAGGCATCTCCGTTGTTGCTGGT---------AACATATAATTGTTTTGTTTTTT 221 ************ ************** * ** ** consensus_10636#0 GTCCTCCCATAGCGCTCGCTATTGGTGCAAAATTTATCCCACTAAGAAAACCTAACAAAC 353 consensus_10636#1 ATCCATTGGAAAACATTCCTATGAAATTAAAGTTTTC----------AGATGTAGCATTG 294 consensus_10636#2 ATCTC----AAAAAATTG--AAAAAATCAAGATTTATTT--------GAACTTGTGCGCT 267 ** * * * ** *** * * consensus_10636#0 TTCCAGGTGAGGTGATGTCAAAGGAGTACGAGCTGGAGTATGGCGCCGACTGCTTGGAAA 413 consensus_10636#1 CTTCA----AAGTAATTTCATAGGATATAAAATTCCTCCATGATTTGGAGAAATTGTAGC 350 consensus_10636#2 TTGTATATTCAAGTACTCCATCCGTCCCTTAATTAATATAAGGGATTTTGATATTTTGCT 327 * * * ** * * * * * ** consensus_10636#0 TGCACGTCGGCGCGGTACAGCCCGGCGAGCGAGCACTCGTCGTCGACGACCTCGTCGCCA 473 consensus_10636#1 ATAATTAAGGTCTAACATAAT---GTTCACAAATACCTTTGATTAA--AATTCATAGGCA 405 consensus_10636#2 TGCACTGTTTTAATCACTCGTCTTATTAAAAAAAAATTGTG--CAA--ATATAAAAACGA 383 * * * * * * * * consensus_10636#0 CCGGCGGCACGCTCTGTGCCGCCATCGTCTTGCTTGA-GCGTGCTGGTGCAGAAGTGGTG 532 consensus_10636#1 CCTTCTTAATTTTCTTTCTCCCTAATAAAT--CTAGATACATACT--TTTAAATTTATTG 461 consensus_10636#2 AAAGTTGTGCTTAAAGTACTTTGAGTAATA----AAGTAAGTCACAAATAAAATAAATAA 439 * * * * * consensus_10636#0 GAGTGTGCATGTGTGATTGAGCTCCCGGAACTGAAGGGTCGTGAGAGGCTCAATGGGAAG 592 consensus_10636#1 TAATTTTCTTATCAGGTTCT-CCCTCTGTCCCAAAATATTTTGAAAATTGGGATGGATGG 520 consensus_10636#2 TAGTTTTAATTTTTTAATAAGACGAATGTTCAAACAG----TACAAAGTAAAATGTCAAA 495 * * * * * * * * * * * *** consensus_10636#0 CCACTGTACGTTCTGGTGGAGTCTCACTCCTAGCTTAGCT-ACATATATACCACTCTAGC 651 consensus_10636#1 GATGTATTC-TAGTACTACAGATCTGGTCATA-CTTGTCT-AGATTTATAGTACT----- 572 consensus_10636#2 ATCTCTTATATTAAGGGACGGAGGGAGTAGTAACTAATCTGATCTTTATCTCAAAAAAAT 555 * * * * ** ** ** * * *** * consensus_10636#0 TGCAGAATTTAATTCTTCTTCTTGGTGCATTCCACTATTCTGTCCATGTGTAGT-TTAAT 710 consensus_10636#1 ---AGGATACGTCATATCCAACCAAAATATTTTATATTTAGGGACAGAGAGAGTATCAAA 629 consensus_10636#2 ATCAGATCTTATCACATCCA-TTGAAATATATAATTCATTTCTTTAATACTAAGTCAGAG 614 ** ** ** * * * * * consensus_10636#0 TTTGTGTCTGCTTAAAATTCAGCACTCAGTGTGTAAGTGTACAACT-CTAATGGATGGCA 769 consensus_10636#1 CAACTACTTTGTGCAATTCCAACACTGCTCCTGTGATTTTCCTATTTCTAAAAAAAAAAA 689 consensus_10636#2 TTATTATTTATGAAAATCCCAATA-TAGTCAATTAAAAGCGTGA---------------- 657 * * ** ** * * * * * consensus_10636#0 ACTCTGCTGATCGCGGTGTGGGTGTAGTAACATCTTTCTTCCGTGGATTCGTTTTTTTTA 829 consensus_10636#1 AAAAAA------------------------------------------------------ 695 consensus_10636#2 ------------------------------------------------------------ consensus_10636#0 TTTGAATCGCTTTAGGTGTGTCCTTTCCAAAAAAAAAAAAAAAAGG 875 consensus_10636#1 ---------------------------------------------- consensus_10636#2 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||