These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1064#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 426 fasta sequence [TTTTATTGGCGACAAATTTATCAAATATGCTCTAAATACATATTTTGGGGGTATATAGCCGGATTTTTGTTTTCACATATCCTCACCCAACGAAAATTGGAGTACTCTTTTAATAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATTTGTGTTAAAAACAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCTTACTTTTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAACTTAATTGCCACCAAACTCCTTGAAACCTGGGGGCTTGTAGGCGATGAAACTAATAAACTGCACCTGCCTGACGTTGTCAAACCCGATGATACGGACAAAGGCATCGGGGTAGGCCTT] [+] EMBL CF298240 [TTTTATTGGCGACAAATTTATCAAATATGCTCTAAATACATATTTTGGGGGTATATAGCCGGATTTTTGTTTTCACATATCCTCACCCAACGAAAATTGGAGTACTCTTTTAATAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATTTGTGTTAAAAACAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCTTACTTTTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAACTTAATTGCCACCAAACTCCTTGAAACCTGGGGGCTTGTAGGCGATGAAACTAATAAACTGCACCTGCCTGACGTTGTCAAACCCGATGATACGGACAAAGGCATCGGGGTAGGCCTT] consensusID : consensus_1064#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 348 fasta sequence [TTTTTTTTTTTTTTTTTTTGTTTTACATATCCTCACCCAACGATAATTGGAGTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAAAAAATTATTACATATGTGTTAAAAACAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAACTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAACTAATCAACTGCACCTGCCTGACGTTGTCGAAACCCATG] [+] EMBL CF298901 [TTTTTTTTTTTTTTTTTTTGTTTTACATATCCTCACCCAACGATAATTGGAGTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAAAAAATTATTACATATGTGTTAAAAACAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAACTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAACTAATCAACTGCACCTGCCTGACGTTGTCGAAACCCATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1064#0 TTTTATTGGCGACAAATTTATCAAATATGCTCTAAATACATATTTTGGGGGTATATAGCC 60 consensus_1064#1 --------------------------------------------------TTTTTTTTTT 10 * * * consensus_1064#0 GGATTTTTGTTTTCACATATCCTCACCCAACGAAAATTGGAGTACTCTTTTAATAAA-CC 119 consensus_1064#1 TTTTTTTTTGTTTTACATATCCTCACCCAACGATAATTGGAGTACTCTTACAATAAAACC 70 ***** *** ******************* *************** ****** ** consensus_1064#0 GGCCGGAAAGGGAGGGAAAAAATTATTACATTTGTGTTAAAAACAAAGGCCATTGAAATG 179 consensus_1064#1 GGCCGGAGAGGGAGGGAAAAAATTATTACATATGTGTTAAAAACAAAGGCCATTGAAATG 130 ******* *********************** **************************** consensus_1064#0 GTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAA 239 consensus_1064#1 GTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAA 190 ************************************************************ consensus_1064#0 CATAGCCCAAAACAAAGCTGCTTACTTTTATTATAGGCAGCAATCCACCAGCGCGATGCT 299 consensus_1064#1 CATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCT 250 ********************* **** ********************************* consensus_1064#0 TGATCTTAACTTAATTGCCACCAAACTCCTTGAAACCTGGGGGCTTGTAGGCGATGAAAC 359 consensus_1064#1 TGATCTTAACTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAAC 310 ****************************** * *************************** consensus_1064#0 TAATAAACTGCACCTGCCTGACGTTGTCAAACCCGATGATACGGACAAAGGCATCGGGGT 419 consensus_1064#1 TAATCAACTGCACCTGCCTGACGTTGTCGAAACCCATG---------------------- 348 **** *********************** ** ** *** consensus_1064#0 AGGCCTT 426 consensus_1064#1 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||