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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10640#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1467 fasta sequence
[TACCCCTTTATATAGATTGCCAAGAACCATCAAGTACTGAAGTGACTTCGTCTATTTCTAGCTTAATAGCTGAGATTGACCGTTCAAAGGAAATCAGAGGAGATGATCCTGCTCTCATCCTTTACACAAGTGGGACAACTGGTAAACCAAAAGGAGTGGTCCACACTCATAAGGGGATAGTCTCTCAGGTTCAAATTCTGTCAGAGGCATGGGGATATCGAAGTGAAGATCAATTTCTGCACTGTCTCCCACTGCACCATGTGCATGGCCTGTTCAATGCTCTATTTGCACCCCTCTATTCTGGATCAGTGGTTGAGTTCATGCCGAAATTTAGTGTGAGGGGAATATGGCAGAGGTGGCGTGAGTCATATCCCAACAATGGCAGTAAAAATGATGAAGCAATTACAGTATTTACTGGAGTTCCAACAATGTACACACGGCTATTGCAAGGGTATGATGGTATGGATCCTGAACAACAGTCTGCATCTTCCTTTGCTGCAAAGCAATTGAGGCTAATGATGTGTGGATCATCGGCCCTTCCTTCCCCACTTATGAAACGGTGGGAGGAAGTGACAGGTCACCGTCTTTTGGAACGATACGGCATGACTGAGTTTGTCATGGCACTGTCTAACCCATTGCATGGTGCACGTAAAGAAGGTACAGTTGGCAAACCGCTTCCGTGTGTTGAGGCCAAGATTATTATGGAGGATGGGGCTGAAACTACATCTGAAGTTGGCGAGCTTTGTATTAGAAGTCCATCCCTTTTTAAGGAATATTGGAGAAAACCAGAGGTTACTGCAGAATCATTTATTGATGGTGGGTTCTTCAAGACTGGTGATACAGTAACTGTAGACGATGAAGGATATTTCATAATTTTAGGGCGCACAAATGCTGACATCATGAAAGTTGGTGGTTATAAGCTGTCTGCATTAGAAATTGAGTCAGTGCTGTTACAGCATGAAATTGTCCTGGAATGTGCTGTTCTC-GGCTTACCTGACGAAGCTTATGGAGAGATTATCTGTGCAATAATTGTGCCTAAGGAGGACTCAAAGAAAAGAGCTGAACTGGACTCGAAACCAGCACTGACCTTGGAAGCACTGACAAGTTGGTCAAAAGATAAGCTTGCTCCATACAAGATTCCTACGAGGTTGTAC-TTATGGGATTCGCTTCCTCGGAATGCCATGGGAAAGGTCAACAAGAAGGAGCTGAAGAAATTATTAGGAGCTTAGCTGTGGTTCCAGGAAGGCAGACATTGTAATGGTTAGCTAATAAATATTTTTCGCATTGATAATTTTGCTGAATAACCAAAACCAAAAGGAAGTCACTTCTAGCAAAACACTAGAGATATATTCATAGATTTGGTTTTTTATTTTCCAAATAAGAGATTCATAGATATAGTGTTTTCTAATAAATGGCCAACTGAGTTGCCGATATTTTTCCTTGGCCCAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CB622801 [TACCCCTTTATATAGATTGCCAAGAACCATCAAGTACTGAAGTGACTTCGTCTATTTCTAGCTTAATAGCTGAGATTGACCGTTCAAAGGAAATCAGAGGAGATGATCCTGCTCTCATCCTTTACACAAGTGGGACAACTGGTAAACCAAAAGGAGTGGTCCACACTCATAAGGGGATAGTCTCTCAGGTTCAAATTCTGTCAGAGGCATGGGGATATCGAAGTGAAGATCAATTTCTGCACTGTCTCCCACTGCACCATGTGCATGGCCTGTTCAATGCTCTATTTGCACCCCTCTATTCTGGATCAGTGGTTGAGTTCATGCCGAAATTTAGTGTGAGGGGAATATGGCAGAGGTGGCGTGAGTCATATCCCAACAATGGCAGTAAAAATGATGAAGCAATTACAGTATTTACTGGAGTTCCAACAATGTACACACGGCTATTGCAAGGGTATGATGGTATGGATCCTGAACAACAGTCTGCATCTTCCTTTGCTGCAAAGCAATTGAGGCTAATGATGTGTGGATCATCGGCCCTTCCTTCCCCACTTATGAAACGGTGGGAGGAAGTGACAGGTCACCGTCTTTTGGAACGATACGGCATGACTGAGTTTGTCATGGCACTGTCTAACCCATTGCATGGTGCACGTAAAGAATGTACAGTTGGC ]
[+] EMBL AK071943 [ TCGAAGTGAAGATCAATTTCTGCACTGTCTCCCACTGCACCATGTTCATGGCCTGTTCAATGCTCTATTTGCACCCCTCTATTCTGGATCAGTGGTTGAGTTCATGCCGAAATTTAGTGTGAGGGGAATATGGCAGAGGTGGCGTGAGTCATATCCCAACAATGGCAGTAAAAATGATGAAGCAATTACAGTATTTACTGGAGTTCCAACAATGTACACACGGCTATTGCAAGGGTATGATGGTATGGATCCTGAACAACAGTCTGCATCTTCCTTTGCTGCAAAGCAATTGAGGCTAATGATGTGTGGATCATCGGCCCTTCCTTCCCCACTTATGAAACGGTGGGAGGAAGTGACAGGTCACCGTCTTTTGGAACGATACGGCATGACTGAGTTTGTCATGGCACTGTCTAACCCATTGCATGGTGCACGTAAAGAAGGTACAGTTGGCAAACCGCTTCCGTGTGTTGAGGCCAAGATTATTATGGAGGATGGGGCTGAAACTACATCTGAAGTTGGCGAGCTTTGTATTAGAAGTCCATCCCTTTTTAAGGAATATTGGAGAAAACCAGAGGTTACTGCAGAATCATTTATTGATGGTGGGTTCTTCAAGACTGGTGATACAGTAACTGTAGACGATAAAGGATATTTCATAATTTTAGGGCGCACAAATGCTGACATCATGAAAGTTGGTGGTTATAAGCTGTCTGCATTAGAAATTGAGTCAGTGCTGTTACAGCATGAAATTGTCCTGGAATGTGCTGTTCTC GGCTTACCTGACGAAGCTTATGGAGAGATTATCTGTGCAATAATTGTGCCTAAGGAGGACTCAAAGAAAAGAGCTGAACTGGACTCGAAACCAGCACTGACCTTGGAAGCACTGACAAGTTGGTCAAAAGATAAGCTTGCTCCATACAAGATTCCTACGAGGTTGTACATTATGGGATTCGCTTCCTCGGAATGCCATGGGAAAGGTCAACAAGAAGGAGCTGAAGAAATTATTAGGAGCTTAGCTGTGGTTCCAGGAAGGCAGACATTGTAATGGTTAGCTAATAAATATTTTTCGCATTGATAATTTTGCTGAATAACCAAAACCAAAAGGAAGTCACTTCTAGCAAAACACTAGAGATATATTCATAGATTTGGTTTTTTATTTTCCAAATAAGAGATTCATAGATATAGTGTTTTCTAATAAATGGCCAAC ]
[+] EMBL CB685915 [ GTCCTTGCACTGTCTAACCCATTGCATGGTGCACGTAAAGAAGGTACAGTTGGCAAACCGCTTCCGTGTGTTGAGGCCAAGATTATTATGGAGGATGGGGCTGAAACTACATCTGAAGTTGGCGAGCTTTGTATTAGAAGTCCATCCCTTTTTAAGGAATATTGGAGAAAACCAGAGGTTACTGCAGAATCATTTATTGATGGTGGGTTCTTCAAGACTGGTGATACAGTAACTGTAGACGATGAAGGATATTTCATAATTTTAGGGCGCACAAATGCTGACATCATGAAAGTTGGTGGTTATAAGCTGTCTGCATTAGAAATTGAGTCAGTGCTGTTACAGCATGAAATTGTCCTGGAATGTGCTGTTCTC GGCTTACCTGACGAAGCTTATGGAGAGATTATCTGTGCAATAATTGTGCCTAAGGAGGACTCAAAGAAAAGAGCTGAACTGGACTCGAAACCAGCACTGACCTTGGAAGCACTGACAAGTTGGTCAAAAGATAAGCTTGCTCCATACAAGATTCCTACGAGGTTGTAC TTATGGGATTCCCTTCCTCGGAATGCCATGGGAAAGGTCAACAAGAAGGAGCTGAAGAAATTATTAGGAGCTTAGCTGTGGTTCCAGGAAGGCAGACATTGTAATGGTTAGCTAATAAATATTTTTCGCATT ]
[+] EMBL AT003358 [ GGTTCTTCAAGACTGGTGATACAGTACCTGTAGNCGATGAAGGATATTTCAT ATTTTAGGGCGCNCAAATGCTGCCATCATGAAAGTTGGTGGTTATAAGCTGTCTGCATTAGAAATTGNGTCAGTGCTGTTNCAGCATGAAATTGTCCTGGAATGTGCTGTTCTCGGGCTTNCCTGACGAAGCTTATGGAGAGATTATCTGTGCAATAATTGTGCCTAAGGAGGACTCAAAGAAAAGAGCTGAACTGGACTCGAAACCAGCACTGACCTTGGAAGCACTGACAAGTTGGTCAAAAGATAAGCTTGCTCCATACAAGATTCCTACGAGGTTGTAC TTATGGGATTCGCTTCCTCGGAATGCCATGGGAAAGGTCAACAAGAAGGAGCTGAAGAAATTATTAGGAGCTTAGCTGTGGTTCCAGGAAGGCAGACATTGTAATGGTTAGCTAATAAATATTTTTCGCATTGATAATTTTGCTGAATAACCAAAACCAAAAGGAAGTCCCTTCTAGCAAAACACTAGAGATATATTCATAGATTTGGTTTTTTATTTTCCAAATAAGAGATTCATAGATATAGTGTTTTCTAATAAATGGCCAACTGAGTTGCCGATATTTTTCCTTGGCCCAAAAAAAAAAAAAAAAAAAA]
[-] EMBL AU225269 [ TTATGGGATTCGCTTCCTCGGAATGCCATGGGAAAGGTCAACAAGAAGGAGCTGAAGAAATTATTAGGAGCTTAGCTGTGGTTCCAGGAAGGCAGACATTGTAATGGTTAGNTAATAAATATTTTTCGCATTGATAATTTTGCTGAATAACCAAAACCAAAAGGAAGTCANTTNTAGCAAAACACTAGAGATATATTCATAGATTTGGTagcggc ]
consensusID : consensus_10640#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 585 fasta sequence
[TAATTTTAGGGCGCACAAATGGCTGACATCCATGAAAGTTGGTGGTTATAACCTGTCTGCATTAGAAATTGAGTCAGTGCTGTTACAGCATGAAATTGTCCTGGAATGTGCTGTTCTCGGCTTACCTGACGAAGCTTATGGAGAGATTATCTGTGCCATAATTGTGCCTAAGGAGGACTCCAAGAAAAGAGCTGAACTGGACTCGAAACCAGCCCTGACCTTGGAAGCACTGACCAGTTGGTCAAAGATAAGCTTGCTCCATAC-AGATTCCTACGAGGTTGTACTTATGGGATTCGCTTCCTCGGAATGCCACTGGGAAAGGTCAAC-AGAAGGAGCTGAAGAAATTATTAGGAGCTTACNCCTGGTTCCCAGGAA-GCAGACTTTGTAATGGTTAGCTAATTATTTTTCGC-TTGATAATTTTGCTGAATAACC-AAACC-AAAGGAAGTCATAGATTTGGTTTTTTATTTTCC-AATAAGAGATTCATAGATATAGTGTTTTCTAATAANCCGCC-ACTGAGTTGCCGATAAAAAAAATTGGCCAAAAAAAAAAAGCTTAAGCTTTTTTTTTTTGGAGAGTTCCATTATG]
[+] EMBL BM038891 [TAATTTTAGGGCGCACAAATGGCTGACATCCATGAAAGTTGGTGGTTATAACCTGTCTGCATTAGAAATTGAGTCAGTGCTGTTACAGCATGAAATTGTCCTGGAATGTGCTGTTCTCGGCTTACCTGACGAAGCTTATGGAGAGATTATCTGTGCCATAATTGTGCCTAAGGAGGACTCCAAGAAAAGAGCTGAACTGGACTCGAAACCAGCCCTGACCTTGGAAGCACTGACCAGTTGGTCAAAGATAAGCTTGCTCCATAC AGATTCCTACGAGGTTGTACTTATGGGATTCGCTTCCTCGGAATGCCACTGGGAAAGGTCAAC AGAAGGAGCTGAAGAAATTATTAGGAGCTTACNCCTGGTTCCCAGGAA GCAGACTTTGTAATGGTTAGCTAATTATTTTTCGC TTGATAATTTTGCTGAATAACC AAACC AAAGGAAGTCATAGATTTGGTTTTTTATTTTCC AATAAGAGATTCATAGATATAGTGTTTTCTAATAANCCGCC ACTGAGTTGCCGATAAAAAAAA ]
[+] EMBL AU165022 [ CCATACAAGATTCCTACGAGGTTGTACTTATGGGATTCGCTTCCTCGGAATGCCATGGGGAAAGGTCAACAAGAAGGAGCTGAAGAAATTATTAGGAGCTTAGCTGTGGTT CCAGGAAGGCAGACATTGTAATGGTTAGCTAATTATTTTTCGCATTGATAATTTTGCTGAATAACCAAAACCAAAAGGAAGTCATAGATTTGGTTTTTTATTTTCCAAATAAGAGATTCATAGATATAGTGTTTTCTAATAAATGGCCAACTGAGTTGCCGATAtttttccttggccaaaaaaaaaaagcttaagctttttttttttggagagttccattatg]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10640#0 TACCCCTTTATATAGATTGCCAAGAACCATCAAGTACTGAAGTGACTTCGTCTATTTCTA 60
consensus_10640#1 ------------------------------------------------------------
consensus_10640#0 GCTTAATAGCTGAGATTGACCGTTCAAAGGAAATCAGAGGAGATGATCCTGCTCTCATCC 120
consensus_10640#1 ------------------------------------------------------------
consensus_10640#0 TTTACACAAGTGGGACAACTGGTAAACCAAAAGGAGTGGTCCACACTCATAAGGGGATAG 180
consensus_10640#1 ------------------------------------------------------------
consensus_10640#0 TCTCTCAGGTTCAAATTCTGTCAGAGGCATGGGGATATCGAAGTGAAGATCAATTTCTGC 240
consensus_10640#1 ------------------------------------------------------------
consensus_10640#0 ACTGTCTCCCACTGCACCATGTGCATGGCCTGTTCAATGCTCTATTTGCACCCCTCTATT 300
consensus_10640#1 ------------------------------------------------------------
consensus_10640#0 CTGGATCAGTGGTTGAGTTCATGCCGAAATTTAGTGTGAGGGGAATATGGCAGAGGTGGC 360
consensus_10640#1 ------------------------------------------------------------
consensus_10640#0 GTGAGTCATATCCCAACAATGGCAGTAAAAATGATGAAGCAATTACAGTATTTACTGGAG 420
consensus_10640#1 ------------------------------------------------------------
consensus_10640#0 TTCCAACAATGTACACACGGCTATTGCAAGGGTATGATGGTATGGATCCTGAACAACAGT 480
consensus_10640#1 ------------------------------------------------------------
consensus_10640#0 CTGCATCTTCCTTTGCTGCAAAGCAATTGAGGCTAATGATGTGTGGATCATCGGCCCTTC 540
consensus_10640#1 ------------------------------------------------------------
consensus_10640#0 CTTCCCCACTTATGAAACGGTGGGAGGAAGTGACAGGTCACCGTCTTTTGGAACGATACG 600
consensus_10640#1 ------------------------------------------------------------
consensus_10640#0 GCATGACTGAGTTTGTCATGGCACTGTCTAACCCATTGCATGGTGCACGTAAAGAAGGTA 660
consensus_10640#1 ------------------------------------------------------------
consensus_10640#0 CAGTTGGCAAACCGCTTCCGTGTGTTGAGGCCAAGATTATTATGGAGGATGGGGCTGAAA 720
consensus_10640#1 ------------------------------------------------------------
consensus_10640#0 CTACATCTGAAGTTGGCGAGCTTTGTATTAGAAGTCCATCCCTTTTTAAGGAATATTGGA 780
consensus_10640#1 ------------------------------------------------------------
consensus_10640#0 GAAAACCAGAGGTTACTGCAGAATCATTTATTGATGGTGGGTTCTTCAAGACTGGTGATA 840
consensus_10640#1 ------------------------------------------------------------
consensus_10640#0 CAGTAACTGTAGACGATGAAGGATATTTCATAATTTTAGGGCGCACAAATG-CTGACATC 899
consensus_10640#1 ------------------------------TAATTTTAGGGCGCACAAATGGCTGACATC 30
********************* ********
consensus_10640#0 -ATGAAAGTTGGTGGTTATAAGCTGTCTGCATTAGAAATTGAGTCAGTGCTGTTACAGCA 958
consensus_10640#1 CATGAAAGTTGGTGGTTATAACCTGTCTGCATTAGAAATTGAGTCAGTGCTGTTACAGCA 90
******************** **************************************
consensus_10640#0 TGAAATTGTCCTGGAATGTGCTGTTCTCGGCTTACCTGACGAAGCTTATGGAGAGATTAT 1018
consensus_10640#1 TGAAATTGTCCTGGAATGTGCTGTTCTCGGCTTACCTGACGAAGCTTATGGAGAGATTAT 150
************************************************************
consensus_10640#0 CTGTGCAATAATTGTGCCTAAGGAGGACTCAAAGAAAAGAGCTGAACTGGACTCGAAACC 1078
consensus_10640#1 CTGTGCCATAATTGTGCCTAAGGAGGACTCCAAGAAAAGAGCTGAACTGGACTCGAAACC 210
****** *********************** *****************************
consensus_10640#0 AGCACTGACCTTGGAAGCACTGACAAGTTGGTCAAAAGATAAGCTTGCTCCATACAAGAT 1138
consensus_10640#1 AGCCCTGACCTTGGAAGCACTGACCAGTTGGTCAAA-GATAAGCTTGCTCCATACA-GAT 268
*** ******************** *********** ******************* ***
consensus_10640#0 TCCTACGAGGTTGTACTTATGGGATTCGCTTCCTCGGAATGCCA-TGGGAAAGGTCAACA 1197
consensus_10640#1 TCCTACGAGGTTGTACTTATGGGATTCGCTTCCTCGGAATGCCACTGGGAAAGGTCAACA 328
******************************************** ***************
consensus_10640#0 AGAAGGAGCTGAAGAAATTATTAGGAGCTTAGCTGTGGTTCCAGGAAGGCAGACATTGTA 1257
consensus_10640#1 -GAAGGAGCTGAAGAAATTATTAGGAGCTTACNCCTGGTTCCCAGGAAGCAGACTTTGTA 387
****************************** ******* * * ****** *****
consensus_10640#0 ATGGTTAGCTAATAAATATTTTTCGCATTGATAATTTTGCTGAATAACCAAAACCAAAAG 1317
consensus_10640#1 ATGGTTAGCTAAT---TATTTTTCGC-TTGATAATTTTGCTGAATAACCAAACC--AAAG 441
************* ********** ************************* * ****
consensus_10640#0 GAAGTCACTTCTAGCAAAACACTAGAGATATATTCATAGATTTGGTTTTTTATTTTCCAA 1377
consensus_10640#1 GAAGTCA-----------------------------TAGATTTGGTTTTTTATTTTCCAA 472
******* ************************
consensus_10640#0 ATAAGAGATTCATAGATATAGTGTTTTCTAATAAATGGCCAACTGAGTTGCCGATATTTT 1437
consensus_10640#1 -TAAGAGATTCATAGATATAGTGTTTTCTAATAANCCGCCA-CTGAGTTGCCGATAAAAA 530
********************************* **** **************
consensus_10640#0 TCCTTGGCCCAAAAAAAAAAAAAAAAAAAA------------------------- 1467
consensus_10640#1 AAATTGGCCAAAAAAAAAAAGCTTAAGCTTTTTTTTTTTGGAGAGTTCCATTATG 585
****** ********** **
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||