These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10647#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1091 fasta sequence [GGGTTTGGCATTGGGGGCGTCGCAGGAGCCTTGCCCTTGGTCCTCCGCCGCACTCGCACCTGCACCCCTCCCCCGCCGATGGCGATGACCCCACTCCACCACACCTGCTCCTTCTTCTTCCGACCACAACCCTCTCCTAGTCTCTCCCACTCCCCATGCGCCGCCGCCGCCGACGACGACTTCTTCACCGTCGACTACGACCCAGAGGAGGAGAAAGAAGAAGACGAGGAGGGTTCTCCGTGGGAGG-GCGCGGTGGTGTACCGGCGGGACGCGTCGGTTCACCACCTCGAGTACGCCACCACACTGGAGCGCCTCGGCCTTGGCGACCTCTCCTCCACTCACTCTCGGGCGCGCGCCGCCACCATGGGAATCCTCATCCTCTCCTCCACCAACCTTACCGGTACCAAGGACGATGACACCCCGGTGCTCGTCTCCCTCGACGTTGCCAGGCGCCGCGGCCGCCTCCGCCTCGACGGCATCGTCCGCACTGTCATCACCCTCGGTTGCTATGGGTGTGCTGAGCCAGCGCCTCAAGGTATATTTGCCAATTTTTCCCTCTTACTGACCGAAGACAGAGTAGAGGAACCTGATGTGGTTGATCTCGGCACGATATTTGAAGAAGAACAAACCAAAGCTCCTTCGCTAACCGGAAGCCAAGAAGATGGAGACGATGAAGATATAGATTGGGATGACCGGCTGCATTTCCCAGCTGGAGAAAAGGAGATTGATATCTCAAAGCACATCAGGGACATCATTCACTTGGAGATCACGCTCGATGCCCTGTGCAGTCCCACCTGCAAAGGTCTCTGCCTTGGCTGCGGCGAAAACCTCAACACCAGCAGCTGCAGCTGCAACGCAGAGAAACAGCAGGCCAAGAATGTTCAGCGGCGAGGGCCTCTCAAAGACCTGTTGAAGCCACTGCAAAGGTGATGTAAATACCGCACGGCAGATTTTATACGGTGATATGTATGTAATACTTTGTAGGAGTATTCGAAGATAATATGTTTAGATGATAAATTTCTTCTCGTCCTCCTTTTTGAGCTCATCTCCTACTCTACTTTTTAAGACGGAAAAATAGACGCCATGACTTG] [+] EMBL AK098955 [GGGTTTGGCATTGGGGGCGTCGCAGGAGCCTTGCCCTTGGTCCTCCGCCGCACTCGCACCTGCACCCCTCCCCCGCCGATGGCGATGACCCCACTCCACCACACCTGCTCCTTCTTCTTCCGACCACAACCCTCTCCTAGTCTCTCCCACTCCCCATGCGCCGCCGCCGCCGACGACGACTTCTTCACCGTCGACTACGACCCAGAGGAGGAGAAAGAAGAAGACGAGGAGGGTTCTCCGTGGGAGG GCGCGGTGGTGTACCGGCGGGACGCGTCGGTTCACCACCTCGAGTACGCCACCACACTGGAGCGCCTCGGCCTTGGCGACCTCTCCTCCACTCACTCTCGGGCGCGCGCCGCCACCATGGGAATCCTCATCCTCTCCTCCACCAACCTTACCGGTACCAAGGACGATGACACCCCGGTGCTCGTCTCCCTCGACGTTGCCAGGCGCCGCGGCCGCCTCCGCCTCGACGGCATCGTCCGCACTGTCATCACCCTCGGTTGCTATGGGTGTGCTGAGCCAGCGCCTCAAGGTATATTTGCCAATTTTTCCCTCTTACTGACCGAAGACAGAGTAGAGGAACCTGATGTGGTTGATCTCGGCACGATATTTGAAGAAGAACAAACCAAAGCTCCTTCGCTAACCGGAAGCCAAGAAGATGGAGACGATGAAGATATAGATTGGGATGACCGGCTGCATTTCCCAGCTGGAGAAAAGGAGATTGATATCTCAAAGCACATCAGGGACATCATTCACTTGGAGATCACGCTCGATGCCCTGTGCAGTCCCACCTGCAAAGGTCTCTGCCTTGGCTGCGGCGAAAACCTCAACACCAGCAGCTGCAGCTGCAACGCAGAGAAACAGCAGGCCAAGAATGTTCAGCGGCGAGGGCCTCTCAAAGACCTGTTGAAGCCACTGCAAAGGTGATGTAAATACCGCACGGCAGATTTTATACGGTGATATGTATGTAATACTTTGTAGGAGTATTCGAAGATAATATGTTTAGATGATAAATTTCTTCTCGTCCTCCT ] [+] EMBL CF334411 [ TTGGCATTGGGGGCGTCGCAGGAGCCTTGCCCTTGGTCCTCCGCCGCACTCGCACCTGCACCCCTCCCCCGCCGATGGCGATGACCCCACTCCACCACACCTGCTCCTTCTTCTTCCGACCACAACCCTCTCCTAGTCTCTCCCACTCCCCATGCGCCGCCGCCGCCGACGACGACTTCTTCACCGTCGACTACGACCCAGAGGAGGAGAAAGAAGAAGACGAGGAGGGTTCTCCGTGGGAGGCGCGC GTGGTGTACCGGCGGGACGCGTCGGTTCACCACCTCGAGTACGCCACCACACTGGAGCGCCTCGGCCTTGGCGACCTCTCCTCCACTCACTCTCGGGCGCGCGCCGCCACCATGGGAATCCTCATCCTCTCCTCCACCAACCTTACCGGTACCAAGGACGATGACACCCCGGTGCTCGTCTCCCTCGACG ] [+] EMBL AK061847 [ ATTGGGGGCGTCGCAGGAGCCTTGCCCTTGGTCCTCCGCCGCACTCGCACCTGCACCCCTCCCCCGCCGATGGCGATGACCCCACTCCACCACACCTGCTCCTTCTTCTTCCGACCACAACCCTCTCCTAGTCTCTCCCACTCCCCATGCGCCGCCGCCGCCGACGACGACTTCTTCACCGTCGACTACGACCCAGAGGAGGAGAAAGAAGAAGACGAGGAGGGTTCTCCGTGGGAGG GCGCGGTGGTGTACCGGCGGGACGCGTCGGTTCACCACCTCGAGTACGCCACCACACTGGAGCGCCTCGGCCTTGGCGACCTCTCCTCCACTCACTCTCGGGCGCGCGCCGCCACCATGGGAATCCTCATCCTCTCCTCCACCAACCTTACCGGTACCAAGGACGATGACACCCCGGTGCTCGTCTCCCTCGACGTTGCCAGGCGCCGCGGCCGCCTCCGCCTCGACGGCATCGTCCGCACTGTCATCACCCTCGGTTGCTATGGGTGTGCTGAGCCAGCGCCTCAAGGTATATTTGCCAATTTTTCCCTCTTACTGACCGAAGACAGAGTAGAGGAACCTGATGTGGTTGATCTCGGCACGATATTTGAAGAAGAACAAACCAAAGCTCCTTCGCTAACCGGAAGCCAAGAAGATGGAGACGATGAAGATATAGATTGGGATGACCGGCTGCATTTCCCAGCTGGAGAAAAGGAGATTGATATCTCAAAGCACATCAGGGACATCATTCACTTGGAGATCACGCTCGATGCCCTGTGCAGTCCCACCTGCAAAGGTCTCTGCCTTGGCTGCGGCGAAAACCTCAACACCAGCAGCTGCAGCTGCAACGCAGAGAAACAGCAGGCCAAGAATGTTCAGCGGCGAGGGCCTCTCAAAGACCTGTTGAAGCCACTGCAAAGGTGATGTAAACACCGCACGGCAGATTTTATACGGTGATATGTATGTAATACTTTGTAGGAGTATTCGAAGATAATATGTTTAGATGATAAACTTCTTCTCGTCCTCCTTTTTGAGCTCATCTCCTACTCTACTTTTTAAGACGGAAAAATAGACGCCATGACTTG] consensusID : consensus_10647#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 696 fasta sequence [GCATCGTCCGCACTGTCATCACCCTCGGTTGCTATGGTTGTGCTGAGCCAGCGCCTCAAGGTATATTTGCGAATTTTTCCCTGTTACTGACCGAAGGCAGAGTAGAGGAACCTGATGTGGTTGATCTCGGCACGATATTTGAAGAAGA-ACAAACCAAAGCTCCTGTGCTAACTGGAAGCCAAGAAGATGGAGACGA-CAAAGATATAGATTGGGATGACCGGTTGCATTTCCCAGCTGGAGAAAAGGAGATTGATATCTCGAAGCACATCAGGGACATCATTCACTTAGAGATCACGCTCGATGCCCTGTGCAGTCCCACCTGCAAAGGTCTCTGCGTTGGCTGCGGCGAAAATCTCAACACCAGCAGCTGCAGCTGCAACACAGAGAAACAGCAGGCTAAGGCTAAGAATGTTCAGCGGCGAGGGCCTCTC-AAAGACCTGTTGAAACCACTGCAAAGGTGATGTAAACACCGCACGGCAGATTTTAGACAGTGATATGTATGTAATACGCTGTAGCAGTATTCGAAGATAATATGTTTAGATGATAAATTTC-TTTTTTGAGCTCATATCCTACTGTAAGACGGAAAAATTGATGCCATGACGTGTCTGTTTGCGTGTGTTCGAGGTACCTGAATTCTGACATGCTATCGGAGGCATCGATTTGTAGGGTGACAGTTTTCTTGTGCCAAAAAAAAAA] [-] EMBL CB652951 [GCATCGTCCGCACTGTCATCACCCTCGGTTGCTATGGTTGTGCTGAGCCAGCGCCTCAAGGTATATTTGCGAATTTTTCCCTGTTACTGACCGAAGGCAGAGTAGAGGAACCTGATGTGGTTGATCTCGGCACGATATTTGAAGAAGA ACAAACCAAAGCTCCTGTGCTAACTGGAAGCCAAGAAGATGGAGACGA CGAAGATATAGATTGGGATGACCGGTTGCATTTCCCAGCTGGAGAAAAGGAGGTTGATATCTCGAAGCACATCAGGGACATCATTCACTTAGAGATCACGCTCGATGCCCTGTGCAGTCCCACCTGCAAAGGTCTCTGCGTTGGCTGCGGCGAAAATCTCAACACCAGCAGCTGCAGCTGCAACACAGAGAAACAGCAGGCTAAGGCTAAGAATGTTCAGCGGCGAGGGCCTCTCAAAAGACCTGTTGAAACCACTGCAAAGGTGATGTAAACACCGCACGGCAGATTTTAGACAGTGATATGTATGTAATACGTTGTAGCAGTATTCGAAGATAATATGTTTAGATGATAAATTTCATTTTTTGAGCTCATATCCTACTGTAAGACGGAAAAATTGATGCCATGACGTGTCTGTTTGCGTGTGTTCGAGGTACCTGAATTCTGACATGCTATCGGAGGCAT ] [+] EMBL BI812282 [ cCAGAGTAGAGGAACCTGATGTGGTTGATCTCGGCACGATATTTGAAGAAGAGACCAACC AAGCTCCTGTGCTAACCGGAAGCC AGAAGATGGAGACGACCAAAGATATAGATTGGGATGACCGGTTGCATTTCCCAGCTGGAGAAAAGGAGATTGATATCTCGAAGCACATCAGGGACATCATTCACTTAGAGATCACGCTCGATGCCCTGTGCAGTCCCACCTGCAAAGGTCTCTGCGTTGGCTGCGGCGAAAATCTC ACACCAGCAGCTGCAGCTGCAACACAGAGAAACAGCAGGCTAAGGCTAAGAATGTTCAGCGGCGAGGGCCTCTC AAAGACCTGTTGAAACCACTGCAAAGGTGATGTAAACACCGCACGGCAGATTTTAGACAGTGATATGTATGTAATACGCTGTAGCAGTATTCGAAGATAATATGTTTAGATGATAAATTTC TTTTTTGAGCTCATATCCTACTGTAAGACGGAAAAATTGATGCCATGACGTGTCTGTTTGCGTGTGTTCGAGGTACCTGAAaaaaa ] [+] EMBL BQ907535 [ GGAGACGA CAAAGATATAGATTGGGATGACCGGTTGCATTTCCCAGCTGGAGAAAAGGAGATTGATATCTCGAAGCACATCAGGGACATCATTCACTTAGAGATCACGCTCGATGCCCTGTGCAGTCCCACCTGCAAAGGTCTCTGCGTTGGCTGCGGCGAAAATCTCAACACCAGCAGCTGCAGCTGCAACACAGAGAAACAGCAGGCTAAGGCTAAGAATGTTCAGCGGCGAGGGCCTCTC AAAGACCTGTTGAAACC CTGCAAAGGTGATGTAAACACCGCACGGCAGATTTTAGACAGTGATATGTATGTAATACGCTGTAGCAGTATTCGAAGATAATATGTTTAGATGATAAATTTC TTTTTTGAGCTCATATCCTACTGTAAGACGGAAAAATTGATGCCNTGACGTGTCTGTTTGCGTGTGTTCGAGGTACCTGAATTCTGACATGCTATCGGAGGCATCGATTTGTAGGGTGACAGTTTTCTTGTGCCAAAAAAAAAA] consensusID : consensus_10647#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence [CAAGGTATATTTGCCAATTTTTCCCTCTTACTGACCGAAGACAGAGTAGAGGAACCTGATGTGGTTGATCTCGGCACGATATTTGAAGAAGAACAAACCAAAGCTCCTTCGCTAACCGGAAGCCAAGAAGATGGAGACGATGAAGATATAGATTGGGATGACCGGCTGCATTTCCCAGCTGGAGAAAAGGAGATTGATATTTCAAAGCACATCAGGGACATCATTCACTTGGAGATCACGCTCGATGCCCTGTGCAGTCCCACCTGCAAAGGTTTTTGCCTTGGCTGCGGCAAAAACCTCAACACCAGCAGCTGCAGTTGCAACGCAGAGAAACAGCAGGCCAAGAATGTTCAGCGGCGAGGGCCTTTCAAAGACCTGTTGAAGCCCCTGCAAAGGTGATGTAAACCCCGCCCGGCAGATTTTATACGGTGATATGTATGTAATACTTTGTAGGAGTATTCGAAGAATAATATGTTTAGATGATAAATTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF334410 [CAAGGTATATTTGCCAATTTTTCCCTCTTACTGACCGAAGACAGAGTAGAGGAACCTGATGTGGTTGATCTCGGCACGATATTTGAAGAAGAACAAACCAAAGCTCCTTCGCTAACCGGAAGCCAAGAAGATGGAGACGATGAAGATATAGATTGGGATGACCGGCTGCATTTCCCAGCTGGAGAAAAGGAGATTGATATTTCAAAGCACATCAGGGACATCATTCACTTGGAGATCACGCTCGATGCCCTGTGCAGTCCCACCTGCAAAGGTTTTTGCCTTGGCTGCGGCAAAAACCTCAACACCAGCAGCTGCAGTTGCAACGCAGAGAAACAGCAGGCCAAGAATGTTCAGCGGCGAGGGCCTTTCAAAGACCTGTTGAAGCCCCTGCAAAGGTGATGTAAACCCCGCCCGGCAGATTTTATACGGTGATATGTATGTAATACTTTGTAGGAGTATTCGAAGAATAATATGTTTAGATGATAAATTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10647#0 GGGTTTGGCATTGGGGGCGTCGCAGGAGCCTTGCCCTTGGTCCTCCGCCGCACTCGCACC 60 consensus_10647#2 ------------------------------------------------------------ consensus_10647#1 ------------------------------------------------------------ consensus_10647#0 TGCACCCCTCCCCCGCCGATGGCGATGACCCCACTCCACCACACCTGCTCCTTCTTCTTC 120 consensus_10647#2 ------------------------------------------------------------ consensus_10647#1 ------------------------------------------------------------ consensus_10647#0 CGACCACAACCCTCTCCTAGTCTCTCCCACTCCCCATGCGCCGCCGCCGCCGACGACGAC 180 consensus_10647#2 ------------------------------------------------------------ consensus_10647#1 ------------------------------------------------------------ consensus_10647#0 TTCTTCACCGTCGACTACGACCCAGAGGAGGAGAAAGAAGAAGACGAGGAGGGTTCTCCG 240 consensus_10647#2 ------------------------------------------------------------ consensus_10647#1 ------------------------------------------------------------ consensus_10647#0 TGGGAGGGCGCGGTGGTGTACCGGCGGGACGCGTCGGTTCACCACCTCGAGTACGCCACC 300 consensus_10647#2 ------------------------------------------------------------ consensus_10647#1 ------------------------------------------------------------ consensus_10647#0 ACACTGGAGCGCCTCGGCCTTGGCGACCTCTCCTCCACTCACTCTCGGGCGCGCGCCGCC 360 consensus_10647#2 ------------------------------------------------------------ consensus_10647#1 ------------------------------------------------------------ consensus_10647#0 ACCATGGGAATCCTCATCCTCTCCTCCACCAACCTTACCGGTACCAAGGACGATGACACC 420 consensus_10647#2 ------------------------------------------------------------ consensus_10647#1 ------------------------------------------------------------ consensus_10647#0 CCGGTGCTCGTCTCCCTCGACGTTGCCAGGCGCCGCGGCCGCCTCCGCCTCGACGGCATC 480 consensus_10647#2 ------------------------------------------------------------ consensus_10647#1 -------------------------------------------------------GCATC 5 consensus_10647#0 GTCCGCACTGTCATCACCCTCGGTTGCTATGGGTGTGCTGAGCCAGCGCCTCAAGGTATA 540 consensus_10647#2 ---------------------------------------------------CAAGGTATA 9 consensus_10647#1 GTCCGCACTGTCATCACCCTCGGTTGCTATGGTTGTGCTGAGCCAGCGCCTCAAGGTATA 65 ********* consensus_10647#0 TTTGCCAATTTTTCCCTCTTACTGACCGAAGACAGAGTAGAGGAACCTGATGTGGTTGAT 600 consensus_10647#2 TTTGCCAATTTTTCCCTCTTACTGACCGAAGACAGAGTAGAGGAACCTGATGTGGTTGAT 69 consensus_10647#1 TTTGCGAATTTTTCCCTGTTACTGACCGAAGGCAGAGTAGAGGAACCTGATGTGGTTGAT 125 ***** *********** ************* **************************** consensus_10647#0 CTCGGCACGATATTTGAAGAAGAACAAACCAAAGCTCCTTCGCTAACCGGAAGCCAAGAA 660 consensus_10647#2 CTCGGCACGATATTTGAAGAAGAACAAACCAAAGCTCCTTCGCTAACCGGAAGCCAAGAA 129 consensus_10647#1 CTCGGCACGATATTTGAAGAAGAACAAACCAAAGCTCCTGTGCTAACTGGAAGCCAAGAA 185 *************************************** ****** ************ consensus_10647#0 GATGGAGACGATGAAGATATAGATTGGGATGACCGGCTGCATTTCCCAGCTGGAGAAAAG 720 consensus_10647#2 GATGGAGACGATGAAGATATAGATTGGGATGACCGGCTGCATTTCCCAGCTGGAGAAAAG 189 consensus_10647#1 GATGGAGACGACAAAGATATAGATTGGGATGACCGGTTGCATTTCCCAGCTGGAGAAAAG 245 *********** *********************** *********************** consensus_10647#0 GAGATTGATATCTCAAAGCACATCAGGGACATCATTCACTTGGAGATCACGCTCGATGCC 780 consensus_10647#2 GAGATTGATATTTCAAAGCACATCAGGGACATCATTCACTTGGAGATCACGCTCGATGCC 249 consensus_10647#1 GAGATTGATATCTCGAAGCACATCAGGGACATCATTCACTTAGAGATCACGCTCGATGCC 305 *********** ** ************************** ****************** consensus_10647#0 CTGTGCAGTCCCACCTGCAAAGGTCTCTGCCTTGGCTGCGGCGAAAACCTCAACACCAGC 840 consensus_10647#2 CTGTGCAGTCCCACCTGCAAAGGTTTTTGCCTTGGCTGCGGCAAAAACCTCAACACCAGC 309 consensus_10647#1 CTGTGCAGTCCCACCTGCAAAGGTCTCTGCGTTGGCTGCGGCGAAAATCTCAACACCAGC 365 ************************ * *** *********** **** ************ consensus_10647#0 AGCTGCAGCTGCAACGCAGAGAAACAGCAGGCCAAG------AATGTTCAGCGGCGAGGG 894 consensus_10647#2 AGCTGCAGTTGCAACGCAGAGAAACAGCAGGCCAAG------AATGTTCAGCGGCGAGGG 363 consensus_10647#1 AGCTGCAGCTGCAACACAGAGAAACAGCAGGCTAAGGCTAAGAATGTTCAGCGGCGAGGG 425 ******** ****** **************** *** ****************** consensus_10647#0 CCTCTCAAAGACCTGTTGAAGCCACTGCAAAGGTGATGTAAATACCGCACGGCAGATTTT 954 consensus_10647#2 CCTTTCAAAGACCTGTTGAAGCCCCTGCAAAGGTGATGTAAACCCCGCCCGGCAGATTTT 423 consensus_10647#1 CCTCTCAAAGACCTGTTGAAACCACTGCAAAGGTGATGTAAACACCGCACGGCAGATTTT 485 *** **************** ** ****************** **** *********** consensus_10647#0 ATACGGTGATATGTATGTAATACTTTGTAGGAGTATTCGAAGA-TAATATGTTTAGATGA 1013 consensus_10647#2 ATACGGTGATATGTATGTAATACTTTGTAGGAGTATTCGAAGAATAATATGTTTAGATGA 483 consensus_10647#1 AGACAGTGATATGTATGTAATACGCTGTAGCAGTATTCGAAGA-TAATATGTTTAGATGA 544 * ** ****************** ***** ************ **************** consensus_10647#0 TAAATTTCTTCTCGTCCTCCTTTTTGAGCTCATCTCCTACTCTACTTTTTAAGACGGAAA 1073 consensus_10647#2 TAAATTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAA------------------------ 519 consensus_10647#1 TAAATTTCTT-----------TTTTGAGCTCATATCCTACTGTA-------AGACGGAAA 586 ******* ** * * consensus_10647#0 AATAGACGCCATGACTTG------------------------------------------ 1091 consensus_10647#2 ------------------------------------------------------------ consensus_10647#1 AATTGATGCCATGACGTGTCTGTTTGCGTGTGTTCGAGGTACCTGAATTCTGACATGCTA 646 consensus_10647#0 -------------------------------------------------- consensus_10647#2 -------------------------------------------------- consensus_10647#1 TCGGAGGCATCGATTTGTAGGGTGACAGTTTTCTTGTGCCAAAAAAAAAA 696 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||