These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10652#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 888 fasta sequence [CTGATCTCTCTCCTTTCGCGAGCTCCGACCACCGAGACCTCCTCGCCGCCGTCGGCCGCGATGCAGCAGCGGCGCCCCGCCTCCGGCCGGCCATCCGGGACGGACGGCTCCGACTTCTCCTACCGCATGGTCGTCGACTCACGGTACCAGAGAGTTGCAGATGGCAAATCCCGCCTCGGCCGCCTCATCCTCGTGCAGGCTCTGCACCAAGTGGCCGGGGGTGCGCTGCTGTTGCTCGCGCTGTCGGAGGGCGCGGAGATGAACAAGTTCGCCGTGATGTCCGTGGCTGCTGGACTGTTGGCCATTGTGCTGGGAGAAATAGGACGTAGGCGGACAATGGCTGTGCTGCTCCGGA-TGTA-CA-CAAGCTT-GT-CATCAATTGCTGTTGCATTCTCTGTGGCG-TGCATTATTCGGTCAGAGTTGTTCTTCAAGATCACGAAGCAAAATA-CAGAGTCCATAACAAGCCATGAACTATTGGAGGTGGTTCGTGTTGCTCTTGGTGTCCTGCTTCAATTGGTGGTTATAGCTACAACAACTCGACTTCTGCAAAATATGTCTCCTCCCAGGAGAGCTTCATGAAAATGTTGTGACATGGCACTTGTGCTTTACCATTAGAAACAACTACTCATTTTTGTACTTGTAGATTGCAACTTG-CAAGAGACTTGTAATGAAGCGGC-ATTGGTTCACAAATCCATGACAACCATGACTCCATTCTGCTTCTTCCATTTGTAGAA-CTGGACTGGAAA-CTTGAAAGCATAGATTACATTGCAGTATCGTCATGTTGTTTCGCCCAGGCTGTTACTGCTGTCCAGTCCAGTATATGGACGCGTGCCTGGTTCTAAATTGCTCTGTTCATG-ACCAGATCAA-CATTTTCTCACGGTAAAAAAAAAA] [+] EMBL CF334625 [CTGATCTCTCTCCTTTCGCGAGCTCCGACCACCGAGACCTCCTCGCCGCCGTCGGCCGCGATGCAGCAGCGGCGCCCCGCCTCCGGCCGGCCATCCGGGACGGACGGCTCCGACTTCTCCTACCGCATGGTCGTCGACTCACGGTACCAGAGAGTTGCAGATGGCAAATCCCGCCTCGGCCGCCTCATCCTCGTGCAGGCTCTGCACCAAGTGGCCGGGGGTGCGCTGCTGTTGCTCGCGCTGTCGGAGGGCGCGGAGATGAACAAGTTCGCCGTGATGTCCGTGGCTGCTGGACTGTTGGCCATTGTGCTGGGAGAAATAGGACGTAGGCGGACAATGGCTGTGCTGCTCCGGA TGTA CA CAAGCTT GT CATCAATTGCTGTTGCATTCTCTGTGGCG TGCATTATTCGGTCAGAGTTGTTCTTCAAG ] [+] EMBL AK103246 [ TCTCTCCTTTCGCGAGCTCCGACCACCGAGACCTCCTCGCCGCCGTCGGCCGCGATGCAGCAGCGGCGCCCCGCCTCCGGCCGGCCATCCGGGACGGACGGCTCCGACTTCTCCTACCGCATGGTCGTCGACTCACGGTACCAGAGAGTTGCAGATGGCAAATCCCGCCTCGGCCGCCTCATCCTCGTGCAGGCTCTGCACCAAGTGGCCGGGGGTGCGCTGCTGTTGCTCGCGCTGTCGAAGGGCGCGGAGATGAACAAGTTCGCCGTGATGTCCGTGGCTGCTGGACTGTTGGCCATTGTGCTGGGAGAAATAGGACGTAGGCGGACAATGGCTGTGCTGCTCCGGA TGTA CA CAAGCTT GT CATCAATTGCTGTTGCATTCTCTGTGGCG TGCATTATTCGGTCAGAGTTGTTCTTCAAGATCACGAAGCAAAATA CAGAGTCCATAACAAGCCATGAACTATTGGAGGTGGTTCGTGTTGCTCTTGGTGTCCTGCTTCAATTGGTGGTTATAGCTACAACAACTCGACTTCTGCAAAATATGTCTCCTCCCAGGAGAGCTTCATGAAAATGTTGTGACATGGCACTTGTGCTTTACCATTAGAAACAACTACTCATTTTTGTACTTGTAGATTGCAACTTG CAAGAGACTTGTAATGAAGCGG ] [-] EMBL CF334624 [ GTGGCTGCTGGACTGTTGGCCATTGTGCTGGGAGAAATAGGACGTAGGCGGACAATGGCTGTGCTGCTCCGGA TGTA CA CAAGCTT GT CATCAATTGCTGTTGCATTCTCTGTGGCG TGCATTATTCGGTCAGAGTTGTTCTTCAAGATCACGAAGCAAAATA CAGAGTCCATAACAAGCCATGAACTATTGGAGGTGGTTCGTGTTGCTCTTGGTGTCCTGCTTCAATTGGTGGTTATAGCTACAACAACTCGACTTCTGCAAAATATGTCTCCTCCCAGGAGAGCTTCATGAAAATGTTGTGACATGGCACTTGTGCTTTACCATTAGAAACAACTACTCATTTTTGTACTTGTAGATTGCAACTTG CAAGAGACTTGTAATGAAGCGGCAATTGGTTCACAAATCCATGACAACCATGACTCCATTCTGCTTTTTCCATTTGTAGAA CTGGACTGGAAA CTTGAAAGCATAGATTACATTGCAGTAaaaaaa ] [+] EMBL BI800214 [ ccTGCCTCCCCGGATTGTACCACCAAGCTTGGTCCATCAATTCCTGTTCCATTCTCT TGGCGTTCCATTATTC GTCAGA TTGTTCTTCAAGATCACGAA CCAAATACCAGAGTCCATAACAACCCATGAACTATTGGAGGTGGTTCGTGTTGCTCTTGGTGTCCTGCTTCAATTGGTGGTTATAGCTACAACAACCAGACTTCTGCAAAATATGTCTCCTCCCAGGAGAGCTTCATGAAAATGTTGTGACATGGCACTTGTGCTTTACCATTAGAAACAACTACTCATTTTTGTACTTGTAGATTGCAACTTG CAAGAGACTTGTAATGAAGCGGC ATTGGTTCACAAATCCATGACAACCATGACTCCATTCTGCTTCTTCCATTTGTAGAACCTGGACTGGAAACCTTGAAAGCATAGATTACATTGCAGTATCGTCATGTTGTTTCGCCCAGGCTGTTACTGCTGTCCAGTCCAGTATATGGACGCGTGCCTGGTTCTAAATTGCTCTGTTCATG ACCAGATCAA CATTTTCTCACGGTAAAAAA ] [+] EMBL BI803734 [ CATAACAAGCCATGAACTATTGGAGGTGGTTCGTGTTGCTCTTGGTGTCCTGCTTCAATTGGTGGTTATAGCTACAACAACCAGACTTCTGCAAAATATGTCTCCTCCCAGGAGAGCTTCATGAAAATGTTGTGACATGGCACTTGTGCTTTACCATTAGAAACAACTACTCATTTTTGTACTTGTAGATTGCAACTTGCCAAGAGACTTGTAATGAAGCGGC ATTGGTTCACAAATCCATGAC ACCATGACTCCATTCTGCTTCTTCCATTTGTAGAA CTGGACTGGAAACCTTGAAAGCATAGATTACATTGCAGTATCGTCATGTTGTTTCGCCCAGGCTGTTACTGCTGTCCAGTCCAGTATATGGACGCGTGCCTGGTTCTAAATTGCTCTGTTCATGCACCAGATCAACCATTTTCTCACGGTAAAAAAAAAA] consensusID : consensus_10652#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 574 fasta sequence [GCCTCCTGTGCTCGCCTGTCGAAGGGCCGGAGATGAACAAGTTCCCGTGATGTCCGTGGCCTGCTGGGACTGTTGCCATTGTCTGGGAGAAATAGGACGTAGCCAGACAATGGCTGTGCTGCTCCGGATGTACACAAGCTTGTCATCAATTGCTGTTGCATTCTCTGTGGCGTGCACTTATTCGGTCAGAGTTGTTCTTCAAGATCACGAAGCAAAATACAGAGTCCATAACAACCATGAACTATTGGAGGTGGTTCGTGTTGCTCTTGGTGTCCTGCTTCAATTGGTGGTTATAGCTACAACAACCAGACTTCTGCAAAATATGTCTCCTCCCAGGAGAGCTTCATGAAAATGTTGTGACATGGCACTTGTGCTTTACCATTAGAAACAACTACTCATTTTTGTACTTGTAGATTGCAACTTGCAAGAGACTTGTAATGAAGCGGCAATTGGTTCACAAATCCATGACAACCATGACTCCATTCTGCTTCTTCCATTTGTAGAACTGGACTGGAAACTTGAAAGCATAGATTACATTGCAGTATCGTCATGTTGTTTCGCCCCAAAAAAAAAA] [+] EMBL BI802027 [GCCTCCTGTGCTCGCCTGTCGAAGGGCCGGAGATGAACAAGTTCCCGTGATGTCCGTGGCCTGCTGGGACTGTTGCCATTGTCTGGGAGAAATAGGACGTAGCCAGACAATGGCTGTGCTGCTCCGGATGTACACAAGCTTGTCATCAATTGCTGTTGCATTCTCTGTGGCGTGCACTTATTCGGTCAGAGTTGTTCTTCAAGATCACGAAGCAAAATACAGAGTCCATAACAACCATGAACTATTGGAGGTGGTTCGTGTTGCTCTTGGTGTCCTGCTTCAATTGGTGGTTATAGCTACAACAACCAGACTTCTGCAAAATATGTCTCCTCCCAGGAGAGCTTCATGAAAATGTTGTGACATGGCACTTGTGCTTTACCATTAGAAACAACTACTCATTTTTGTACTTGTAGATTGCAACTTGCAAGAGACTTGTAATGAAGCGGCAATTGGTTCACAAATCCATGACAACCATGACTCCATTCTGCTTCTTCCATTTGTAGAACTGGACTGGAAACTTGAAAGCATAGATTACATTGCAGTATCGTCATGTTGTTTCGCCCCAAAAAAAAAA] consensusID : consensus_10652#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence [GGCGGACGCGTGGCGGACGCGTGGGTCCGTGGCTCTGGACTGTTGCCACTTGTGCTGGGAGAAATAGGACGTAGCAGACAATGGCTGCTGCTGCTCCGGATGTACACAAGCATTGTCATCAATTGCTGTTGCATTCTCTTGGCGTGCATTATTCGGTCAGAGTTGTTCTTCCAGATCACGAAGCCCAAATACAAGAGTCCATAACAAGCCATGAACTATTGGAGGTGGTTCGTTTGCTCTTGGTGTCCTGCTTCAATTGGTGGCTTATAGCTACAACAAACCAGACTTCTGCAAATATGTCTCCTCCCAGGAGAGCTTCATGAAAATGTTGTGACATGGCACTTGTGCTTTACCATTAGAAACAACTACTCATTTTTGTACTTGTAGATTGCAACTTGCAAGAGACTTGTAATGAAGCGGCAATTGGTTCACAAATCCATGACAACCATGACTCCAAAAAA] [+] EMBL BI800957 [GGCGGACGCGTGGCGGACGCGTGGGTCCGTGGCTCTGGACTGTTGCCACTTGTGCTGGGAGAAATAGGACGTAGCAGACAATGGCTGCTGCTGCTCCGGATGTACACAAGCATTGTCATCAATTGCTGTTGCATTCTCTTGGCGTGCATTATTCGGTCAGAGTTGTTCTTCCAGATCACGAAGCCCAAATACAAGAGTCCATAACAAGCCATGAACTATTGGAGGTGGTTCGTTTGCTCTTGGTGTCCTGCTTCAATTGGTGGCTTATAGCTACAACAAACCAGACTTCTGCAAATATGTCTCCTCCCAGGAGAGCTTCATGAAAATGTTGTGACATGGCACTTGTGCTTTACCATTAGAAACAACTACTCATTTTTGTACTTGTAGATTGCAACTTGCAAGAGACTTGTAATGAAGCGGCAATTGGTTCACAAATCCATGACAACCATGACTCCAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10652#0 CTGATCTCTCTCCTTTCGCGAGCTCCGACCACCGAGACCTCCTCGCCGCCGTCGGCCGCG 60 consensus_10652#1 ------------------------------------------------------------ consensus_10652#2 ------------------------------------------------------------ consensus_10652#0 ATGCAGCAGCGGCGCCCCGCCTCCGGCCGGCCATCCGGGACGGACGGCTCCGACTTCTCC 120 consensus_10652#1 ------------------------------------------------------------ consensus_10652#2 ------------------------------------------------------------ consensus_10652#0 TACCGCATGGTCGTCGACTCACGGTACCAGAGAGTTGCAGATGGCAAATCCCGCCTCGGC 180 consensus_10652#1 ------------------------------------------------------------ consensus_10652#2 ------------------------------------------------------------ consensus_10652#0 CGCCTCATCCTCGTGCAGGCTCTGCACCAAGTGGCCGGGGGTGCGCTGCTGTTGCTCGCG 240 consensus_10652#1 --------------------------------------------GCCTCCTGTGCTCGC- 15 consensus_10652#2 ------------------------------------------------------------ consensus_10652#0 CTGTCGGAGGGCGCGGAGATGAACAAGTTCGCCGTGATGTCCGTGGC-TGCTGG-ACTGT 298 consensus_10652#1 CTGTCGAAGGGC-CGGAGATGAACAAGTTC-CCGTGATGTCCGTGGCCTGCTGGGACTGT 73 consensus_10652#2 -----GGCGGACGCGT-GGCGGACG-------CGTGG-GTCCGTGGC--TCTGG-ACTGT 43 * ** * ** * * ** **** ********* **** ***** consensus_10652#0 TGGCCATTGTGCTGGGAGAAATAGGACGTAGGCGGACAATGGCTG-TGCTGCTCCGGATG 357 consensus_10652#1 TG-CCATTGT-CTGGGAGAAATAGGACGTAGCCAGACAATGGCTG-TGCTGCTCCGGATG 130 consensus_10652#2 TGCCACTTGTGCTGGGAGAAATAGGACGTAG-CAGACAATGGCTGCTGCTGCTCCGGATG 102 ** * **** ******************** * *********** ************** consensus_10652#0 TACACAAGC-TTGTCATCAATTGCTGTTGCATTCTCTGTGGCGTGCA-TTATTCGGTCAG 415 consensus_10652#1 TACACAAGC-TTGTCATCAATTGCTGTTGCATTCTCTGTGGCGTGCACTTATTCGGTCAG 189 consensus_10652#2 TACACAAGCATTGTCATCAATTGCTGTTGCATTCTCT-TGGCGTGCA-TTATTCGGTCAG 160 ********* *************************** ********* ************ consensus_10652#0 AGTTGTTCTTCAAGATCACGAAGCA-AAATACA-GAGTCCATAACAAGCCATGAACTATT 473 consensus_10652#1 AGTTGTTCTTCAAGATCACGAAGCA-AAATACA-GAGTCCATAACAA-CCATGAACTATT 246 consensus_10652#2 AGTTGTTCTTCCAGATCACGAAGCCCAAATACAAGAGTCCATAACAAGCCATGAACTATT 220 *********** ************ ******* ************* ************ consensus_10652#0 GGAGGTGGTTCGTGTTGCTCTTGGTGTCCTGCTTCAATTGGTGG-TTATAGCTACAACAA 532 consensus_10652#1 GGAGGTGGTTCGTGTTGCTCTTGGTGTCCTGCTTCAATTGGTGG-TTATAGCTACAACAA 305 consensus_10652#2 GGAGGTGGTTCGT-TTGCTCTTGGTGTCCTGCTTCAATTGGTGGCTTATAGCTACAACAA 279 ************* ****************************** *************** consensus_10652#0 -CTCGACTTCTGCAAAATATGTCTCCTCCCAGGAGAGCTTCATGAAAATGTTGTGACATG 591 consensus_10652#1 -CCAGACTTCTGCAAAATATGTCTCCTCCCAGGAGAGCTTCATGAAAATGTTGTGACATG 364 consensus_10652#2 ACCAGACTTCTGCAAA-TATGTCTCCTCCCAGGAGAGCTTCATGAAAATGTTGTGACATG 338 * ************ ******************************************* consensus_10652#0 GCACTTGTGCTTTACCATTAGAAACAACTACTCATTTTTGTACTTGTAGATTGCAACTTG 651 consensus_10652#1 GCACTTGTGCTTTACCATTAGAAACAACTACTCATTTTTGTACTTGTAGATTGCAACTTG 424 consensus_10652#2 GCACTTGTGCTTTACCATTAGAAACAACTACTCATTTTTGTACTTGTAGATTGCAACTTG 398 ************************************************************ consensus_10652#0 CAAGAGACTTGTAATGAAGCGGCA-TTGGTTCACAAATCCATGACAACCATGACTCCATT 710 consensus_10652#1 CAAGAGACTTGTAATGAAGCGGCAATTGGTTCACAAATCCATGACAACCATGACTCCATT 484 consensus_10652#2 CAAGAGACTTGTAATGAAGCGGCAATTGGTTCACAAATCCATGACAACCATGACTCCAAA 458 ************************ ********************************* consensus_10652#0 CTGCTTCTTCCATTTGTAGAACTGGACTGGAAACTTGAAAGCATAGATTACATTGCAGTA 770 consensus_10652#1 CTGCTTCTTCCATTTGTAGAACTGGACTGGAAACTTGAAAGCATAGATTACATTGCAGTA 544 consensus_10652#2 AAA--------------------------------------------------------- 461 consensus_10652#0 TCGTCATGTTGTTTCGCCCAGGCTGTTACTGCTGTCCAGTCCAGTATATGGACGCGTGCC 830 consensus_10652#1 TCGTCATGTTGTTTCGCCCCAAAAAAAAAA------------------------------ 574 consensus_10652#2 ------------------------------------------------------------ consensus_10652#0 TGGTTCTAAATTGCTCTGTTCATGACCAGATCAACATTTTCTCACGGTAAAAAAAAAA 888 consensus_10652#1 ---------------------------------------------------------- consensus_10652#2 ---------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||