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Oryza sativa
cluster # 10656 cluster # 10656       Sequences # 7       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10656#0 length = 2243 sequences # 4  
consensus_10656#1 length = 681 sequences # 1  
consensus_10656#2 length = 408 sequences # 1  
consensus_10656#3 length = 278 sequences # 1  

consensusID : consensus_10656#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 2243
fasta sequence
                              [TCGCATTTGGCTTCCCCCTTCCTTCCTCACCCCAATGCCTCCTCTCCCCTTCTTCCCTCTCCTCTGCCCCCCACGCTCCCACGTCACTGCCAGGTAGGCCCCACCATGCACCAGCTTCCTTCCCCCGCCCCCTCCTCCGCCTCCTCCTCGCCGTCGACGACGACGGCGACGACCACGTCGCTCGTGTCGCGCGCCCGCACCGCGATCCACTCCGCCGCCGCCCGCGTCCTCACCGACATCAAGGCCGACCTCCGAGATGCGGACGGATCCGGGGCGCTCAGGGCGCCGTCCCCGCGGCCATCGGCGGATCGGCACCCCGACTCCATCGCCGCCGTCGTGGGTTCGCCGCGAGACGAGGCCCCAGATATAATCTCCTCCCCAGATGGGGATACCTCAAATATTGAACCTGACTCAACTTCTTCAACAAAGATGGCCTTTCCTTCAGTTTCAGTGGTTAAGCAGCTGGTTGCTGCCATTGACAACGGTAAAAATTTCAAGTCAATGAATGATATGAGGTCTAATGGAGACCAATTACTGAAAGAGAAGGGGGGCTTGAGCTTATCTGTTGTCAAATCACTTGTTCGGCGTGAAAAGGATGAAAGATCGAGTTCTGAATTTGTTGGCGATGATGAAACACAATCTTTGATGTACACATTGTTCAAATTAGAGGAGCATTTTCCCCATGACAAAAGTCAATGCAACTCAGAGTTGCATCACTCAATATCTTTGCCCAAGGATCTACACGGTGCACCACCTGGAAGTTTCACTCATCAAATAGCAGAGACTATTGGCAAAATAAGTTCTGTATACAAAATGGCGTTCTTTTGGCAATCCCTAGTTCTCGAGTTGAAGAAACTATGGTCCGATGGGCAACCGGTGCCTCGAATGCCACTGGATGCTGCTCCAGACTTGAATTGTTGTTTACTGCATCAAGAGATACAAGTTATAAATTGCTGCATTGCCAGGAAAAAACGGAGAAAAGCCGCCAAGGAATCACTGGATTCATTGTTAAAACGTGCAAGTATTGATAACTCCAATCACTTGTATTCAAATGGGGACTCTCCTGACAGCGAGATGTATATAAAAGGTAGTGCTGGTGACAATGTTCTTCGGCTTGGTGCTGATCATCCATCAGAGAACTTAACGTTGTTGGAAACTGGTGAGCTCGTATATTCTCCAACTCTGCAGGAAGGTCCCATTATGACAGCAGAGCTTATAAAAGAAACAGAAGAACTTGTCTTAAGGACTGGAAGTGTTGGTGCTGGGTGTTCTCAACTTCTATCAGATATGCAAGCCTTCAAGGCCGCAAATCCAGGGTGTGTCCTGGAAGACTTCATTAGATGGCACTCTCCACCTGATTGGTCTGAAGATTGTGCAGCAAGCAGCGCAGAAGTTGGGGAGGGCTCATCTAGACGAGGTCGATTAAGTGAGAGAATGCAAACAAAAGAAGGGAACTTGTGGAAGGAATTATGGGGGGCTGCAAAACCAATACCTGCTGTTGAACAGGCGCCTATATATGATGAAGATTTAGCTGTGGAGAGCATTTTTGATGCCTTGGAAGTTATTGAACCGTCAAAACTTTTTGAGCAGCTACTAGCTGTCATTCTTTCTGTATGCTTTGTAGCAGCAGAATTGGTGCTACCAGCAGGTAGCAACTTGTCGAAATTATTCTACGACTGTAAAGATTACATACTCAGCATTTACCAAGATGACATATCAAAAGAGAAGCTAGATGAGATATGCAAGGTCTACGAGACGATGGAAGCCATAGTAACTCACCCTGAAGAAACTCTTCAGATAATGGAGGCACCTGATGAAAAGTCCCCCCTTGAGAGTAAAAACCGGTTCAAGATCAAGCTCAACTTTATCGGCAAAGATCGCCATCCACTGTGGAAGCGTGCACCAAAGGAGGAGAAAAAATCATCACCGAAAGACGAGAAAAGATCGTCAGAGGAAAGGAGCACGAAAATTTTCTCAAACCTTCTTGACAAGAAGGTTTCCATATTCTCCAAGAAGAATGCAAAACCAACAACAGAGGTACCGCCACCACCTCCCCCTTCATCTGCCCCTGGACCATTCGATGATAGTGAGTGGACGATTTTGTAGATGCAAATCGTGGATGTTTCCTTTGTACAATTTGTAGAGTGGTGCCACAAGATGTCGGGAATAAGCTCAAGCTGTAAATACTCCATCCAATTCATTAACCAATCTGAAATAAAATGAAAAAAAAAGAGATGAAGATT]

[+] EMBL AK070461             [TCGCATTTGGCTTCCCCCTTCCTTCCTCACCCCAATGCCTCCTCTCCCCTTCTTCCCTCTCCTCTGCCCCCCACGCTCCCACGTCACTGCCAGGTAGGCCCCACCATGCACCAGCTTCCTTCCCCCGCCCCCTCCTCCGCCTCCTCCTCGCCGTCGACGACGACGGCGACGACCACGTCGCTCGTGTCGCGCGCCCGCACCGCGATCCACTCCGCCGCCGCCCGCGTCCTCACCGACATCAAGGCCGACCTCCGAGATGCGGACGGATCCGGGGCGCTCAGGGCGCCGTCCCCGCGGCCATCGGCGGATCGGCACCCCGACTCCATCGCCGCCGTCGTGGGTTCGCCGCGAGACGAGGCCCCAGATATAATCTCCTCCCCAGATGGGGATACCTCAAATATTGAACCTGACTCAACTTCTTCAACAAAGATGGCCTTTCCTTCAGTTTCAGTGGTTAAGCAGCTGGTTGCTGCCATTGACAACGGTAAAAATTTCAAGTCAATGAATGATATGAGGTCTAATGGAGACCAATTACTGAAAGAGAAGGGGGGCTTGAGCTTATCTGTTGTCAAATCACTTGTTCGGCGTGAAAAGGATGAAAGATCGAGTTCTGAATTTGTTGGCGATGATGAAACACAATCTTTGATGTACACATTGTTCAAATTAGAGGAGCATTTTCCCCATGACAAAAGTCAATGCAACTCAGAGTTGCATCACTCAATATCTTTGCCCAAGGATCTACACGGTGCACCACCTGGAAGTTTCACTCATCAAATAGCAGAGACTATTGGCAAAATAAGTTCTGTATACAAAATGGCGTTCTTTTGGCAATCCCTAGTTCTCGAGTTGAAGAAACTATGGTCCGATGGGCAACCGGTGCCTCGAATGCCACTGGATGCTGCTCCAGACTTGAATTGTTGTTTACTGCATCAAGAGATACAAGTTATAAATTGCTGCATTGCCAGGAAAAAACGGAGAAAAGCCGCCAAGGAATCACTGGATTCATTGTTAAAACGTGCAAGTATTGATAACTCCAATCACTTGTATTCAAATGGGGACTCTCCTGACAGCGAGATGTATATAAAAGGTAGTGCTGGTGACAATGTTCTTCGGCTTGGTGCTGATCATCCATCAGAGAACTTAACGTTGTTGGAAACTGGTGAGCTCGTATATTCTCCAACTCTGCAGGAAGGTCCCATTATGACAGCAGAGCTTATAAAAGAAACAGAAGAACTTGTCTTAAGGACTGGAAGTGTTGGTGCTGGGTGTTCTCAACTTCTATCAGATATGCAAGCCTTCAAGGCCGCAAATCCAGGGTGTGTCCTGGAAGACTTCATTAGATGGCACTCTCCACCTGATTGGTCTGAAGATTGTGCAGCAAGCAGCGCAGAAGTTGGGGAGGGCTCATCTAGACGAGGTCGATTAAGTGAGAGAATGCAAACAAAAGAAGGGAACTTGTGGAAGGAATTATGGGGGGCTGCAAAACCAATACCTGCTGTTGAACAGGCGCCTATATATGATGAAGATTTAGCTGTGGAGAGCATTTTTGATGCCTTGGAAGTTATTGAACCGTCAAAACTTTTTGAGCAGCTACTAGCTGTCATTCTTTCTGTATGCTTTGTAGCAGCAGAATTGGTGCTACCAGCAGGTAGCAACTTGTCGAAATTATTCTACGACTGTAAAGATTACATACTCAGCATTTACCAAGATGACATATCAAAAGAGAAGCTAGATGAGATATGCAAGGTCTACGAGACGATGGAAGCCATAGTAACTCACCCTGAAGAAACTCTTCAGATAATGGAGGCACCTGATGAAAAGTCCCCCCTTGAGAGTAAAAACCGGTTCAAGATCAAGCTCAACTTTATCGGCAAAGATCGCCATCCACTGTGGAAGCGTGCACCAAAGGAGGAGAAAAAATCATCACCGAAAGACGAGAAAAGATCGTCAGAGGAAAGGAGCACGAAAATTTTCTCAAACCTTCTTGACAAGAAGGTTTCCATATTCTCCAAGAAGAATGCAAAACCAACAACAGAGGTACCGCCACCACCTCCCCCTTCATCTGCCCCTGGACCATTCGATGATAGTGAGTGGACGATTTTGTAGATGCAAATCGTGGATGTTTCCTTTGTACAATTTGTAGAGTGGTGCCACAAGATGTCGGGAATAAGCTCAAGCTGTAAATACTCCATCCAATTCATTAACCAATCTGAAATAAAATGAAAAAAAAAGAGATGAAGATT]
[+] EMBL AU181924             [      TTGGCTTCCCCCTTCCTTCCTCACCCCAATGCCTCCTCTCCCCTTCTTCCCTCTCCTCTGCCCCCCACGCTCCCACGTCACTGCCAGGTAGGCCCCACCATGCACCAGCTTCCTTCCCCCGCCCCCTCCTCCGCCTCCTCCTCGCCGTCGACGACGACGGCGACGACCACGTCGCTCGTGTCGCGCGCCCGCACCGCGATCCACTCCGCCGCCGCCCGCGTCCTCACCGACATCAAGGCCGACCTCCGAGATGCGGACGGATCCGGGGCGCTCAGGGCGCCGTCCCCGCGGCCATCGGCGGATCGGCACCCCGACTCCATCGCCGCCGTCGTGGGTTCGCCGCGAGACGAGGCCCCAGATATAATCTCCTCCCCAGATGGGGATACCTCAAATATTGAACCTGACTCAACTTCTTCAACAAAGATGGCCTTTCCTTCAGTTTCAGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AI978475             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GATGAAAAGTCCCCCCTTGAGAGTAAAAACCGGTTCAAGATCAAGCTCAACTTTATCGGCAAAGATCGCCATCCACTGTGGAAGCGTGCACCAAAGGAGGAGAAAAAATCATCACCGAAAGACGAGAAAAGATCGTCAGAGGAAAGGAGCACGAAAATTTTCTCAAACCTTCTTGACAAGAAGGTTTCCATATTCTCCAAGAAGAATGCAAAACCAACAACAGAGGTACCGCCACCACCTCCCCCTTCANNNNNCCCTGGACCATTCGATGATAGTGAGTGGACGATTTTGTAGATGCAAATCNNGGATGTTTCCTTTGTACAATTTGTAGAGTGGNNCCACAAGATNNNNNGAATAAGCTCAAGCTGTAAATAC                                                        ]
[+] EMBL AI978476             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GAGGAGAAAAAATCATNNNCGAANGACGAGAAAAGATCGTCNGAGGAAAGGAGNACGAAAATTTTCTCAAACCTTCTTGACAAGAAGGTTTCCATATTCTCCAAGAAGAATGCAAAACCAACAACAGAGGTACCGCCACCACCTCCCCCTTCATCTGCCCCTGGACCATTCGATGATAGTGAGTGGACGATTTTGTAGATGCAAATCGTGGATGTTTCCTTTGTACAATTTGTAGAGTGGTGCCACAAGATGTCGGGAATAAGCTCAAGCTGTAAATACTCCATCCAATTCATTAACCAATC                                 ]


>consensus_10656#0 TCGCATTTGGCTTCCCCCTTCCTTCCTCACCCCAATGCCTCCTCTCCCCTTCTTCCCTCT CCTCTGCCCCCCACGCTCCCACGTCACTGCCAGGTAGGCCCCACCATGCACCAGCTTCCT TCCCCCGCCCCCTCCTCCGCCTCCTCCTCGCCGTCGACGACGACGGCGACGACCACGTCG CTCGTGTCGCGCGCCCGCACCGCGATCCACTCCGCCGCCGCCCGCGTCCTCACCGACATC AAGGCCGACCTCCGAGATGCGGACGGATCCGGGGCGCTCAGGGCGCCGTCCCCGCGGCCA TCGGCGGATCGGCACCCCGACTCCATCGCCGCCGTCGTGGGTTCGCCGCGAGACGAGGCC CCAGATATAATCTCCTCCCCAGATGGGGATACCTCAAATATTGAACCTGACTCAACTTCT TCAACAAAGATGGCCTTTCCTTCAGTTTCAGTGGTTAAGCAGCTGGTTGCTGCCATTGAC AACGGTAAAAATTTCAAGTCAATGAATGATATGAGGTCTAATGGAGACCAATTACTGAAA GAGAAGGGGGGCTTGAGCTTATCTGTTGTCAAATCACTTGTTCGGCGTGAAAAGGATGAA AGATCGAGTTCTGAATTTGTTGGCGATGATGAAACACAATCTTTGATGTACACATTGTTC AAATTAGAGGAGCATTTTCCCCATGACAAAAGTCAATGCAACTCAGAGTTGCATCACTCA ATATCTTTGCCCAAGGATCTACACGGTGCACCACCTGGAAGTTTCACTCATCAAATAGCA GAGACTATTGGCAAAATAAGTTCTGTATACAAAATGGCGTTCTTTTGGCAATCCCTAGTT CTCGAGTTGAAGAAACTATGGTCCGATGGGCAACCGGTGCCTCGAATGCCACTGGATGCT GCTCCAGACTTGAATTGTTGTTTACTGCATCAAGAGATACAAGTTATAAATTGCTGCATT GCCAGGAAAAAACGGAGAAAAGCCGCCAAGGAATCACTGGATTCATTGTTAAAACGTGCA AGTATTGATAACTCCAATCACTTGTATTCAAATGGGGACTCTCCTGACAGCGAGATGTAT ATAAAAGGTAGTGCTGGTGACAATGTTCTTCGGCTTGGTGCTGATCATCCATCAGAGAAC TTAACGTTGTTGGAAACTGGTGAGCTCGTATATTCTCCAACTCTGCAGGAAGGTCCCATT ATGACAGCAGAGCTTATAAAAGAAACAGAAGAACTTGTCTTAAGGACTGGAAGTGTTGGT GCTGGGTGTTCTCAACTTCTATCAGATATGCAAGCCTTCAAGGCCGCAAATCCAGGGTGT GTCCTGGAAGACTTCATTAGATGGCACTCTCCACCTGATTGGTCTGAAGATTGTGCAGCA AGCAGCGCAGAAGTTGGGGAGGGCTCATCTAGACGAGGTCGATTAAGTGAGAGAATGCAA ACAAAAGAAGGGAACTTGTGGAAGGAATTATGGGGGGCTGCAAAACCAATACCTGCTGTT GAACAGGCGCCTATATATGATGAAGATTTAGCTGTGGAGAGCATTTTTGATGCCTTGGAA GTTATTGAACCGTCAAAACTTTTTGAGCAGCTACTAGCTGTCATTCTTTCTGTATGCTTT GTAGCAGCAGAATTGGTGCTACCAGCAGGTAGCAACTTGTCGAAATTATTCTACGACTGT AAAGATTACATACTCAGCATTTACCAAGATGACATATCAAAAGAGAAGCTAGATGAGATA TGCAAGGTCTACGAGACGATGGAAGCCATAGTAACTCACCCTGAAGAAACTCTTCAGATA ATGGAGGCACCTGATGAAAAGTCCCCCCTTGAGAGTAAAAACCGGTTCAAGATCAAGCTC AACTTTATCGGCAAAGATCGCCATCCACTGTGGAAGCGTGCACCAAAGGAGGAGAAAAAA TCATCACCGAAAGACGAGAAAAGATCGTCAGAGGAAAGGAGCACGAAAATTTTCTCAAAC CTTCTTGACAAGAAGGTTTCCATATTCTCCAAGAAGAATGCAAAACCAACAACAGAGGTA CCGCCACCACCTCCCCCTTCATCTGCCCCTGGACCATTCGATGATAGTGAGTGGACGATT TTGTAGATGCAAATCGTGGATGTTTCCTTTGTACAATTTGTAGAGTGGTGCCACAAGATG TCGGGAATAAGCTCAAGCTGTAAATACTCCATCCAATTCATTAACCAATCTGAAATAAAA TGAAAAAAAAAGAGATGAAGATT



consensusID : consensus_10656#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 681
fasta sequence
                              [TTTTTTTTTTTTTGTTGATAAAATGCCCTTGTTAAGAAATTGTTCCTTGGAAGTGATGTATACTTGCAATACAAAGGTGTTAAGACGCATGAGGTCATTACAGGAAGACCTGAAGTGAACTTGATCTGAGTGACTAGATATGAACAATCATAGCTAATATGAAGCACCATATTTATTTATTTTAATTAATGCAGTTGAAGAAACTATGGTCCGATGGGCAACCGGTGCCTCGAATGCCACTGGATGCTGCTCCAGACTTGAATTGTTGTTTACTGCATCAAGAGATACAAGTTATAAATTGCTGCATTGCCAGAAAAAAACGGAGAAAAGCCGCCAAGGAATCACTGGATTCATTGTTAAAACGTGCAAGTATTGATAACTCCAATCACTTGTATTCAAATGGGGACTCTCCTGACAGCGAGATGTATATAAAAGGTAGTGCTGGTGACAATGTTCTTCGGCTTGGTGCTGATCATCCATCAGAGAACTTAACGTTGTTGGAAACTGGTGAGCTCGGATGTTTTCCAACTCTGCAGGTAAGCTGCTGGTTTCTCTGTTTCTTTTTTCAGGGAAGCGTTCTTTTACCATCGAATGTGAGTACCTGCGGAAATAGCATGCTATCTGGGGGTACCCAGCTTTCGTTATGCTTTGGACGCAGCAGAATTGGGNGTACCGATGGTG]

[+] EMBL CA762447             [TTTTTTTTTTTTTGTTGATAAAATGCCCTTGTTAAGAAATTGTTCCTTGGAAGTGATGTATACTTGCAATACAAAGGTGTTAAGACGCATGAGGTCATTACAGGAAGACCTGAAGTGAACTTGATCTGAGTGACTAGATATGAACAATCATAGCTAATATGAAGCACCATATTTATTTATTTTAATTAATGCAGTTGAAGAAACTATGGTCCGATGGGCAACCGGTGCCTCGAATGCCACTGGATGCTGCTCCAGACTTGAATTGTTGTTTACTGCATCAAGAGATACAAGTTATAAATTGCTGCATTGCCAGAAAAAAACGGAGAAAAGCCGCCAAGGAATCACTGGATTCATTGTTAAAACGTGCAAGTATTGATAACTCCAATCACTTGTATTCAAATGGGGACTCTCCTGACAGCGAGATGTATATAAAAGGTAGTGCTGGTGACAATGTTCTTCGGCTTGGTGCTGATCATCCATCAGAGAACTTAACGTTGTTGGAAACTGGTGAGCTCGGATGTTTTCCAACTCTGCAGGTAAGCTGCTGGTTTCTCTGTTTCTTTTTTCAGGGAAGCGTTCTTTTACCATCGAATGTGAGTACCTGCGGAAATAGCATGCTATCTGGGGGTACCCAGCTTTCGTTATGCTTTGGACGCAGCAGAATTGGGNGTACCGATGGTG]


>consensus_10656#1 TTTTTTTTTTTTTGTTGATAAAATGCCCTTGTTAAGAAATTGTTCCTTGGAAGTGATGTA TACTTGCAATACAAAGGTGTTAAGACGCATGAGGTCATTACAGGAAGACCTGAAGTGAAC TTGATCTGAGTGACTAGATATGAACAATCATAGCTAATATGAAGCACCATATTTATTTAT TTTAATTAATGCAGTTGAAGAAACTATGGTCCGATGGGCAACCGGTGCCTCGAATGCCAC TGGATGCTGCTCCAGACTTGAATTGTTGTTTACTGCATCAAGAGATACAAGTTATAAATT GCTGCATTGCCAGAAAAAAACGGAGAAAAGCCGCCAAGGAATCACTGGATTCATTGTTAA AACGTGCAAGTATTGATAACTCCAATCACTTGTATTCAAATGGGGACTCTCCTGACAGCG AGATGTATATAAAAGGTAGTGCTGGTGACAATGTTCTTCGGCTTGGTGCTGATCATCCAT CAGAGAACTTAACGTTGTTGGAAACTGGTGAGCTCGGATGTTTTCCAACTCTGCAGGTAA GCTGCTGGTTTCTCTGTTTCTTTTTTCAGGGAAGCGTTCTTTTACCATCGAATGTGAGTA CCTGCGGAAATAGCATGCTATCTGGGGGTACCCAGCTTTCGTTATGCTTTGGACGCAGCA GAATTGGGNGTACCGATGGTG



consensusID : consensus_10656#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 408
fasta sequence
                              [AAAAGTCCCCCCTTGAGAGTAAAAACCGGTTCAAGATCAAGCTCAACTTTATCGGCAAAGATCGCCATCCNCTGTGGAAGCGTGCNCCAAAGGAGGAGAAAAAATCATCNCCGAAAATTTTCTCAAACCTTCTTGACAAGAAGGTTTCCATATTCTCCAAGAAGAATGCAAAACCAACAACAGAGGTACCGCCACCACCTCCCCCTTCATCTGCCCCTGGACCATTCGATGATAGTGAGTGGACGATTTTGTAGATGCAAATCGTGGATGTTTCCTTTGTACAATTTGTAGAGTGGTGCCACAAGATGTCGGGAATAAGCTCAAGCTGTAAATACTCCATCCAATTCATTAACCAATCTGAAATAAAATGAAAAAAAAAGAGATGAAGATTTTNCCTAAAAAAAAAAA]

[+] EMBL AU181923             [AAAAGTCCCCCCTTGAGAGTAAAAACCGGTTCAAGATCAAGCTCAACTTTATCGGCAAAGATCGCCATCCNCTGTGGAAGCGTGCNCCAAAGGAGGAGAAAAAATCATCNCCGAAAATTTTCTCAAACCTTCTTGACAAGAAGGTTTCCATATTCTCCAAGAAGAATGCAAAACCAACAACAGAGGTACCGCCACCACCTCCCCCTTCATCTGCCCCTGGACCATTCGATGATAGTGAGTGGACGATTTTGTAGATGCAAATCGTGGATGTTTCCTTTGTACAATTTGTAGAGTGGTGCCACAAGATGTCGGGAATAAGCTCAAGCTGTAAATACTCCATCCAATTCATTAACCAATCTGAAATAAAATGAAAAAAAAAGAGATGAAGATTTTNCCTAAAAAAAAAAA]


>consensus_10656#2 AAAAGTCCCCCCTTGAGAGTAAAAACCGGTTCAAGATCAAGCTCAACTTTATCGGCAAAG ATCGCCATCCNCTGTGGAAGCGTGCNCCAAAGGAGGAGAAAAAATCATCNCCGAAAATTT TCTCAAACCTTCTTGACAAGAAGGTTTCCATATTCTCCAAGAAGAATGCAAAACCAACAA CAGAGGTACCGCCACCACCTCCCCCTTCATCTGCCCCTGGACCATTCGATGATAGTGAGT GGACGATTTTGTAGATGCAAATCGTGGATGTTTCCTTTGTACAATTTGTAGAGTGGTGCC ACAAGATGTCGGGAATAAGCTCAAGCTGTAAATACTCCATCCAATTCATTAACCAATCTG AAATAAAATGAAAAAAAAAGAGATGAAGATTTTNCCTAAAAAAAAAAA



consensusID : consensus_10656#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 278
fasta sequence
                              [GCGTCTTCCCACTATTTTCCNGTCCAAGTAATGAATGCACAAACCAACCAACCAGAGGTACCGCCACCACCTCCCCCTTCATCTGCCCCCTGGACCACTTCGACTGATAGTGAGTGGACCGATTTTGTAGATGCAAATCGTGGATGTTTCCTTTGTACAATTTGTAGACGTGGTGCCACCAGATGTCGGGAATAAGCTCAGCTGTAAATACTCCATCCAATTCATTAACCAATCTGAAATAAAATGACCCAAAAGAGATGAAGATTTTACCTAAAAAA]

[+] EMBL BQ906189             [GCGTCTTCCCACTATTTTCCNGTCCAAGTAATGAATGCACAAACCAACCAACCAGAGGTACCGCCACCACCTCCCCCTTCATCTGCCCCCTGGACCACTTCGACTGATAGTGAGTGGACCGATTTTGTAGATGCAAATCGTGGATGTTTCCTTTGTACAATTTGTAGACGTGGTGCCACCAGATGTCGGGAATAAGCTCAGCTGTAAATACTCCATCCAATTCATTAACCAATCTGAAATAAAATGACCCAAAAGAGATGAAGATTTTACCTAAAAAA]


>consensus_10656#3 GCGTCTTCCCACTATTTTCCNGTCCAAGTAATGAATGCACAAACCAACCAACCAGAGGTA CCGCCACCACCTCCCCCTTCATCTGCCCCCTGGACCACTTCGACTGATAGTGAGTGGACC GATTTTGTAGATGCAAATCGTGGATGTTTCCTTTGTACAATTTGTAGACGTGGTGCCACC AGATGTCGGGAATAAGCTCAGCTGTAAATACTCCATCCAATTCATTAACCAATCTGAAAT AAAATGACCCAAAAGAGATGAAGATTTTACCTAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10656#2      ------------------------------------------------------------
consensus_10656#3      ------------------------------------------------------------
consensus_10656#0      TCGCATTTGGCTTCCCCCTTCCTTCCTCACCCCAATGCCTCCTCTCCCCTTCTTCCCTCT 60
consensus_10656#1      ------------------------------------------------------------
                                                                                   

consensus_10656#2      ------------------------------------------------------------
consensus_10656#3      ------------------------------------------------------------
consensus_10656#0      CCTCTGCCCCCCACGCTCCCACGTCACTGCCAGGTAGGCCCCACCATGCACCAGCTTCCT 120
consensus_10656#1      ------------------------------------------------------------
                                                                                   

consensus_10656#2      ------------------------------------------------------------
consensus_10656#3      ------------------------------------------------------------
consensus_10656#0      TCCCCCGCCCCCTCCTCCGCCTCCTCCTCGCCGTCGACGACGACGGCGACGACCACGTCG 180
consensus_10656#1      ------------------------------------------------------------
                                                                                   

consensus_10656#2      ------------------------------------------------------------
consensus_10656#3      ------------------------------------------------------------
consensus_10656#0      CTCGTGTCGCGCGCCCGCACCGCGATCCACTCCGCCGCCGCCCGCGTCCTCACCGACATC 240
consensus_10656#1      ------------------------------------------------------------
                                                                                   

consensus_10656#2      ------------------------------------------------------------
consensus_10656#3      ------------------------------------------------------------
consensus_10656#0      AAGGCCGACCTCCGAGATGCGGACGGATCCGGGGCGCTCAGGGCGCCGTCCCCGCGGCCA 300
consensus_10656#1      ------------------------------------------------------------
                                                                                   

consensus_10656#2      ------------------------------------------------------------
consensus_10656#3      ------------------------------------------------------------
consensus_10656#0      TCGGCGGATCGGCACCCCGACTCCATCGCCGCCGTCGTGGGTTCGCCGCGAGACGAGGCC 360
consensus_10656#1      ------------------------------------------------------------
                                                                                   

consensus_10656#2      ------------------------------------------------------------
consensus_10656#3      ------------------------------------------------------------
consensus_10656#0      CCAGATATAATCTCCTCCCCAGATGGGGATACCTCAAATATTGAACCTGACTCAACTTCT 420
consensus_10656#1      ------------------------------------------------------------
                                                                                   

consensus_10656#2      ------------------------------------------------------------
consensus_10656#3      ------------------------------------------------------------
consensus_10656#0      TCAACAAAGATGGCCTTTCCTTCAGTTTCAGTGGTTAAGCAGCTGGTTGCTGCCATTGAC 480
consensus_10656#1      ------------------------------------------------------------
                                                                                   

consensus_10656#2      ------------------------------------------------------------
consensus_10656#3      ------------------------------------------------------------
consensus_10656#0      AACGGTAAAAATTTCAAGTCAATGAATGATATGAGGTCTAATGGAGACCAATTACTGAAA 540
consensus_10656#1      ------------------------------------------------------------
                                                                                   

consensus_10656#2      ------------------------------------------------------------
consensus_10656#3      ------------------------------------------------------------
consensus_10656#0      GAGAAGGGGGGCTTGAGCTTATCTGTTGTCAAATCACTTGTTCGGCGTGAAAAGGATGAA 600
consensus_10656#1      ------------------------------------------------------------
                                                                                   

consensus_10656#2      ------------------------------------------------------------
consensus_10656#3      ------------------------------------------------------------
consensus_10656#0      AGATCGAGTTCTGAATTTGTTGGCGATGATGAAACACAATCTTTGATGTACACATTGTTC 660
consensus_10656#1      ------------------------------------------------------------
                                                                                   

consensus_10656#2      ------------------------------------------------------------
consensus_10656#3      ------------------------------------------------------------
consensus_10656#0      AAATTAGAGGAGCATTTTCCCCATGACAAAAGTCAATGCAACTCAGAGTTGCATCACTCA 720
consensus_10656#1      ------------------------------------------------------------
                                                                                   

consensus_10656#2      ------------------------------------------------------------
consensus_10656#3      ------------------------------------------------------------
consensus_10656#0      ATATCTTTGCCCAAGGATCTACACGGTGCACCACCTGGAAGTTTCACTCATCAAATAGCA 780
consensus_10656#1      ------------------------------------------------------------
                                                                                   

consensus_10656#2      ------------------------------------------------------------
consensus_10656#3      ------------------------------------------------------------
consensus_10656#0      GAGACTATTGGCAAAATAAGTTCTGTATACAAAATGGCGTTCTTTTGGCAATCCCTAGTT 840
consensus_10656#1      ------------------------------------------------------------
                                                                                   

consensus_10656#2      ------------------------------------------------------------
consensus_10656#3      ------------------------------------------------------------
consensus_10656#0      CTCGAGTTGAAGAAACTATGGTCCGATGGGCAACCGGTGCCTCGAATGCCACTGGATGCT 900
consensus_10656#1      ------------------------------------------------------------
                                                                                   

consensus_10656#2      ------------------------------------------------------------
consensus_10656#3      ------------------------------------------------------------
consensus_10656#0      GCTCCAGACTTGAATTGTTGTTTACTGCATCAAGAGATACAAGTTATAAATTGCTGCATT 960
consensus_10656#1      ------------------------------------------------------------
                                                                                   

consensus_10656#2      ------------------------------------------------------------
consensus_10656#3      ------------------------------------------------------------
consensus_10656#0      GCCAGGAAAAAACGGAGAAAAGCCGCCAAGGAATCACTGGATTCATTGTTAAAACGTGCA 1020
consensus_10656#1      ------------------------------------------------------------
                                                                                   

consensus_10656#2      ------------------------------------------------------------
consensus_10656#3      ------------------------------------------------------------
consensus_10656#0      AGTATTGATAACTCCAATCACTTGTATTCAAATGGGGACTCTCCTGACAGCGAGATGTAT 1080
consensus_10656#1      ------------------------------------------------------------
                                                                                   

consensus_10656#2      ------------------------------------------------------------
consensus_10656#3      ------------------------------------------------------------
consensus_10656#0      ATAAAAGGTAGTGCTGGTGACAATGTTCTTCGGCTTGGTGCTGATCATCCATCAGAGAAC 1140
consensus_10656#1      ------------------------------------------------------------
                                                                                   

consensus_10656#2      ------------------------------------------------------------
consensus_10656#3      ------------------------------------------------------------
consensus_10656#0      TTAACGTTGTTGGAAACTGGTGAGCTCGTATATTCTCCAACTCTGCAGGAAGGTCCCATT 1200
consensus_10656#1      ------------------------------------------------------------
                                                                                   

consensus_10656#2      ------------------------------------------------------------
consensus_10656#3      ------------------------------------------------------------
consensus_10656#0      ATGACAGCAGAGCTTATAAAAGAAACAGAAGAACTTGTCTTAAGGACTGGAAGTGTTGGT 1260
consensus_10656#1      ------------------------------------------------------------
                                                                                   

consensus_10656#2      ------------------------------------------------------------
consensus_10656#3      ------------------------------------------------------------
consensus_10656#0      GCTGGGTGTTCTCAACTTCTATCAGATATGCAAGCCTTCAAGGCCGCAAATCCAGGGTGT 1320
consensus_10656#1      ------------------------------------------------------------
                                                                                   

consensus_10656#2      ------------------------------------------------------------
consensus_10656#3      ------------------------------------------------------------
consensus_10656#0      GTCCTGGAAGACTTCATTAGATGGCACTCTCCACCTGATTGGTCTGAAGATTGTGCAGCA 1380
consensus_10656#1      ------------------------------------------------------------
                                                                                   

consensus_10656#2      ------------------------------------------------------------
consensus_10656#3      ------------------------------------------------------------
consensus_10656#0      AGCAGCGCAGAAGTTGGGGAGGGCTCATCTAGACGAGGTCGATTAAGTGAGAGAATGCAA 1440
consensus_10656#1      ------------------------------------------------------------
                                                                                   

consensus_10656#2      ------------------------------------------------------------
consensus_10656#3      ------------------------------------------------------------
consensus_10656#0      ACAAAAGAAGGGAACTTGTGGAAGGAATTATGGGGGGCTGCAAAACCAATACCTGCTGTT 1500
consensus_10656#1      ------------------------------------------------------------
                                                                                   

consensus_10656#2      ------------------------------------------------------------
consensus_10656#3      ------------------------------------------------------------
consensus_10656#0      GAACAGGCGCCTATATATGATGAAGATTTAGCTGTGGAGAGCATTTTTGATGCCTTGGAA 1560
consensus_10656#1      ------------------------------------------------------------
                                                                                   

consensus_10656#2      ------------------------------------------------------------
consensus_10656#3      ------------------------------------------------------------
consensus_10656#0      GTTATTGAACCGTCAAAACTTTTTGAGCAGCTACTAGCTGTCATTCTTTCTGTATGCTTT 1620
consensus_10656#1      -----------------------------------TTTTTTTTTTTTTGTTGATAAAATG 25
                                                                                   

consensus_10656#2      ------------------------------------------------------------
consensus_10656#3      ------------------------------------------------------------
consensus_10656#0      GTAGCAGCAGAATTGGTGCTACCAGCAGGTAGCAACTTGTCGAAATTATTCTACGACTGT 1680
consensus_10656#1      CCCTTGTTAAGAAATTGTTCCTTGGAAGTGATGTATACTTGCAATACAAAGGTGTTAAGA 85
                                                                                   

consensus_10656#2      ------------------------------------------------------------
consensus_10656#3      ------------------------------------------------------------
consensus_10656#0      AAAGATTACATACTCAGCATTTACCAAGATGACATATCAAAAGAGAAGCTAGATGAGATA 1740
consensus_10656#1      CGCATGAGGTCATTACAGGAAGACCTGAAGTGAACTTGATCTGAGTGACTAGATATGAAC 145
                                                                                   

consensus_10656#2      ------------------------------------------------------------
consensus_10656#3      ------------------------------------------------------------
consensus_10656#0      TGCAAGGTCTACGAGACGATGGAAGCCATAGTAACTCACCCTGAAGAAACTCTTCAGATA 1800
consensus_10656#1      AATCATAGCTAATATGAAGCACCATATTTATTTATTTTAATTAATGCAGTTGAAGAAACT 205
                                                                                   

consensus_10656#2      ----------------AAAAGTCCCCCCTTGAGAGTAAAAACCGGTTCAAGATCAAGCTC 44
consensus_10656#3      ------------------------------------------------------------
consensus_10656#0      ATGGAGGCACCTGATGAAAAGTCCCCCCTTGAGAGTAAAAACCGGTTCAAGATCAAGCTC 1860
consensus_10656#1      ATGGTCCGATGGGCAACCGGTGCCTCGAATGCCACTGGATGCTGCTCCAGACTTGAATTG 265
                                                                                   

consensus_10656#2      AACTTTATCG-GCAAAGATCGCCATCCNCTGTGGAAGCGTGCNCCAAAGGAGGAGAAAAA 103
consensus_10656#3      ------------------------------------------------------------
consensus_10656#0      AACTTTATCG-GCAAAGATCGCCATCCACTGTGGAAGCGTGCACCAAAGGAGGAGAAAAA 1919
consensus_10656#1      TTGTTTACTGCATCAAGAGATACAAGTTATAAATTGCTGCATTGCCAGAAAAAAACGGAG 325
                                                                                   

consensus_10656#2      ATCATCNCCGAAA------------------------------------ATTTTCTCAAA 127
consensus_10656#3      ------------------------------------------------------------
consensus_10656#0      ATCATCACCGAAAGACGAGAAAAGATCGTCAGAGGAAAGGAGCACGAAAATTTTCTCAAA 1979
consensus_10656#1      AAAAGCCGCCAAGGAATCACTGGATTCATTGTTAAAACGTGCAAGTATTGATAACTCCAA 385
                                                                                   

consensus_10656#2      CCTTCT---TGACAAGAAGGTTTCCATATTCTCCAAGAAGAATGCA-AAACCAAC--AAC 181
consensus_10656#3      GCGTCT---TCCCACTA----TTTTCCNGTCCAAGTAATGAATGCACAAACCAACCAACC 53
consensus_10656#0      CCTTCT---TGACAAGAAGGTTTCCATATTCTCCAAGAAGAATGCA-AAACCAAC--AAC 2033
consensus_10656#1      TCACTTGTATTCAAATGGGGACTCTCCTGACAGCGAGATGTATATAAAAGGTAGT--GCT 443
                        *   *   *   *        *       *      * * **  * **   *       

consensus_10656#2      AGAGGTACCG--CCACCACCTCCCCCT--TCATCTGCCCC-TGGACCA-TTCGA-TGATA 234
consensus_10656#3      AGAGGTACCG--CCACCACCTCCCCCT--TCATCTGCCCCCTGGACCACTTCGACTGATA 109
consensus_10656#0      AGAGGTACCG--CCACCACCTCCCCCT--TCATCTGCCCC-TGGACCA-TTCGA-TGATA 2086
consensus_10656#1      GGTGACAATGTTCTTCGGCTTGGTGCTGATCATCCATCAGAGAACTTAACGTTGTTGGAA 503
                        * *  *  *  *  *  * *    **  *****   *         *       **  *

consensus_10656#2      GTGAGTGGAC---GATTTTGTAGA----TGCAAATC-GTGGATGTTTCCTTTGTACAATT 286
consensus_10656#3      GTGAGTGGACC--GATTTTGTAGA----TGCAAATC-GTGGATGTTTCCTTTGTACAATT 162
consensus_10656#0      GTGAGTGGAC---GATTTTGTAGA----TGCAAATC-GTGGATGTTTCCTTTGTACAATT 2138
consensus_10656#1      ACTGGTGAGCTCGGATGTTTTCCAACTCTGCAGGTAAGCTGCTGGTTTCTCTGTTTCTTT 563
                           ***  *   *** ** *  *    ****  *  *  * ** ** ** ***    **

consensus_10656#2      TGTAGA-GTGGTGCCACAAGAT-GTCGGGAATAAGCTCAAGCTGTAA--ATACTCCATCC 342
consensus_10656#3      TGTAGACGTGGTGCCACCAGAT-GTCGGGAATAAGCTCA-GCTGTAA--ATACTCCATCC 218
consensus_10656#0      TGTAGA-GTGGTGCCACAAGAT-GTCGGGAATAAGCTCAAGCTGTAA--ATACTCCATCC 2194
consensus_10656#1      TTTCAGGGAAGCGTTCTTTTACCATCGAATGTGAGTACCTGCGGAAATAGCATGCTATCT 623
                       * *    *  * *       *   ***    * **  *  ** * **    *  * *** 

consensus_10656#2      AATTCATTAACCAATCT--GAAATAAAATGAAAAAAAAAGAGATGAAGATTTTNCCTAAA 400
consensus_10656#3      AATTCATTAACCAATCT--GAAATAAAATGACCCAAAA-GAGATGAAGATTTTACCTAAA 275
consensus_10656#0      AATTCATTAACCAATCT--GAAATAAAATGAAAAAAAAAGAGATGAAGATT--------- 2243
consensus_10656#1      GGG--GGTACCCAGCTTTCGTTATGCTTTGGACGCAGCAGAATTGGGNGTACCGATGGTG 681
                              ** ***   *  *  **    **     *   **  **    *          

consensus_10656#2      AAAAAAAA 408
consensus_10656#3      AAA----- 278
consensus_10656#0      --------
consensus_10656#1      --------
                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)