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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10660#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1113 fasta sequence
[CTCCTCCCCCCCAAAACCACACAAACACCCGCTGCGCCGCTCGCTTCCTCCTCCCCCCCCTCGTGCTCGACATGGCGTGCTCCCACCTGGCCGCCGCCGCCGCCGCGGCCTCCCCGGCGGCCGCGCGTTCACCGGCGGCCTCCAGCGCCGCAACCGCGAGCGCCTTCGCGCGCCTCTCGGCGACGCCCCGGGTCGCGAGCGGCGGGTTGGCCGTTAGGGGCCAGAGGGGTGTAGCCGCTGTTGTCGCCGCCGCCGCCGGGGCCGCCGCGGCGACGCCCGTGGCCGACATCGAGGAACGCCGGGCCACCGAGAAGCAGCCCATCATTGTCATCGATAACTACGACAGCTTTACCTACAACCTCTGCCAGTATATGGGGGAGCTTGGATTGAACTTTGAGGTATATCGCAATGATGAACTTACCATAGAGGATGTAAAGAGGAAGAACCCAAGAGGAATACTTATTTCTCCAGGGCCT-GGTGAGCCACAAGATTCAGGTATATCATTGCAGACTGTTCTGGAACTTGGACCTACCATCCCAATTTTTGGTGTCTGCATGGGTCTGCAGTGTATCGGGGAAGCTTTTGGAGGAAAGATTATCCGTGCTCCTTCTGGTGTCATGCATGGAAAAAGCTCTCCAGTTCGCTACGATGAGGAGCTAGGGAAGGCCTTGTTCAATGGCTTGCCAAACCCATTTACCGCTGCAAGATACCATAGCTTGGTGATCGAGCAGGAGACCTTCCCCCATGACGCTCTGGAAGCCACCGCGTGGACTGAAGATGGCCTTATCATGGCTGCTCGCCACAAGAAGTACAGGCACATCCAGGGAGTCCAATTCCACCCAGAGAGCATCATCACCCCAGAAGGCAAGAGGATCATTCTCAACTTCGTGAGGTTCATCGAGGAGCTGGAGAAGCAGCGTGCCGGAGAGAAGAACTAGTAGACGCTAGCTGTTCAGGCAAAAGTAGAAAGGGGCTTAAGCCGGGTAGATTCAGGGCAGAAAGTGAAAAAGGGTAGGAGTAATAAGGGAAAAAGAGCTCTCCTTTTGTCACATTCGTTTGGTTCGTTGTAATATATATCCTTTGTGGATCT---A--AAAAAAGAANNAAAAANGAAAA]
[+] EMBL AK107879 [CTCCTCCCCCCCAAAACCACACAAACACCCGCTGCGCCGCTCGCTTCCTCCTCCCCCCCCTCGTGCTCGACATGGCGTGCTCCCACCTGGCCGCCGCCGCCGCCGCGGCCTCCCCGGCGGCCGCGCGTTCACCGGCGGCCTCCAGCGCCGCAACCGCGAGCGCCTTCGCGCGCCTCTCGGCGACGCCCCGGGTCGCGAGCGGCGGGTTGGCCGTTAGGGGCCAGAGGGGTGTAGCCGCTGTTGTCGCCGCCGCCGCCGGGGCCGCCGCGGCGACGCCCGTGGCCGACATCGAGGAACGCCGGGCCACCGAGAAGCAGCCCATCATTGTCATCGATAACTACGACAGCTTTACCTACAACCTCTGCCAGTATATGGGGGAGCTTGGATTGAACTTTGAGGTATATCGCAATGATGAACTTACCATAGAGGATGTAAAGAGGAAGAACCCAAGAGGAATATTTATTTCTCCAGGGCCT GGTGAGCCACAAGATTCAGGTATATCATTGCAGACTGTTCTGGAACTTGGACCTACCATCCCAATTTTTGGTGTCTGCATGGGTCTGCAGTGTATCGGGGAAGCTTTTGGAGGAAAGATTATCCGTGCTCCTTCTGGTGTCATGCATGGAAAAAGCTCTCCAGTTCGCTACGATGAGGAGCTAGGGAAGGCCTTGTTCAATGGCTTGCCAAACCCATTTACCGCTGCAAGATACCATAGCTTGGTGATCGAGCAGGAGACCTTCCCCCATGACGCTCTGGAAGCCACCGCGTGGACTGAAGATGGCCTTATCATGGCTGCTCGCCACAAGAAGTACAGGCACATCCAGGGAGTCCAATTCCACCCAGAGAGCATCATCACCCCAGAAGGCAAGAGGATCATTCTCAACTTCGTGAGGTTCATCGAGGAGCTGGAGAAGCAGCGTGCCGGAGAGAAGAACTAGTAGACGCTAGCTGTTCAGGCAAAAGTAGAAAGGGGCTTAAGCCGGGTAGATTCAGGGCAGAAAGTGAAAAAGGGTAGGAGTAATAAGGGAAAAAGAGCTCTCCTTTTGTCACATTCGTTTGGTTCGTTGTAATATATATCCTTTGTG ]
[+] EMBL CB000499 [ ACGCCGGGCCACCGAGAAGCAGCCCATCATTGTCATCCATAACTACGACAGCTTTACCTACAACCTCTGCCAGTATATGGGGGAGCTTGGATTGAACTTTGAGGTATATCGCAATGATGAACTTACCATAGACGATGTCAAGAGGAAGAACCCCAGACGACTACTTATTTCTCCAGGGCCT GGTGAGCCACAACATTCAGGTATATCATTGCAGACTGTTCTGGAACCCGGACCTACTATCCCAATTTTTGGTGTCTGCATGGGTCTGAACCGTATCGGGGAAGCTTTTGGAGGAAAGATTATCCGTGCTCCTT ]
[+] EMBL CB000830 [ ATTGTCATCGATAACTACGACAGCTTTACCTACAACCTCTGCCAGTATATGGGGGAGCTTGGATTGAACTTTGAGGTATATCGCAATGATGAACTTACCATAGAGGATGTAAAGAGGAAGAACCCAAGAGGAATACTTATTTCTCCAGGGCCTGGGTGAGCCACAAGATTCAGGTATATCATTGCAGACTGTTCTGGAACTTGGACCTACCATCCCAATTTTTGGTGTCTGCATGGGTCTGCAGTGTATCGGGGAAGCTTTTGGAGGAAAGATTATCCGTGCTCCTTCTGGTGTCATGCATGGAAAAAGCTCTCCAGTTCGCTACGATGAGGAGCTAGGGAAGGCCTTGTTCAATGGCTTGCCAAACCCATTTACCGCTGCAAGATACCATAGCTTGGTGATCGAGCAGGAGACCTTCCCCCATGACGCTCTGGAAGCCACCGCGTGGACTGAAGATGGCCTTATCATGGCTGCTCGCCACAAGAAGTACAGGCACATCCAGGGAGTCCAATTCCACCCAGAGAGCATCATCACCC ]
[+] EMBL AA751371 [ GGAATACTTATTTCTCCAGGGCCT GGTGAGCCACAAGATTCAGGTATATCATTGCAGACTGTTCTGGAACTTGGACCTACCATCCCAATTTTTGGTGTCTGCATGGGTCTGCAGTGTATCGGGGAAGCTTTTGGAGGAAAGATTATCCGTGCTCCTTCTGGTGTCATGCATGGAAAAAGCTCTCCAGTTCGCTACGATGAGGAGCTAGGGAAGGCCTTGTTCAA ]
[+] EMBL CA765705 [ AACTTCGTGAGGTT ATCGAGGAGCTGGAGAAGCAGCGTGCCGGAGAGAAGAACTAGTAGACGCTAGCTGTTCAGGCAAAAGTNGAAAGGGGCTTAAGCCGGGTAGATTCAGGGCAGAAAGTGAAAAAGGGTAGGAGTAATAAGGGAAAAAGAGCTCTCCTTTTGTCACATTCGTTTGGTTCGTTGTAATATATATCCTTTGTGGATCT A AAAAAAGAANNAAAAANGAAAA]
[+] EMBL AT003492 [ AGCGTGCCGGAGAGAAGAACTAGTAGACGCTAGCTGTTCAGGCAAAAGTAGAAAGGGGCTTAAGCCGGGTAGATTCAGGGCAGAAAGTGAAAAAGGGTAGGAGTAATAAGGGAAAAAGAGCTCTCCTTTTGTCACATTCGTTTGGTTCGTTGTAATATATATCCTTTGTGGATCTTGGATTAAAAAAAAAAAAAAAAa ]
consensusID : consensus_10660#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 277 fasta sequence
[AAAGAGCTCTCCTTTTGTACATTCGTTTGGTTCGTTGTAATATATATCCTTTGTGGATCTTGAATAAGCTCTATCCTGTCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGGTTGCCCCTTCCCAAAAGAAATTTGAAAAAAAAGGGGAAATTCCGGGCCCAAAAAAAAAAATCCCCCAAAAAGGGGGGGTAAAA]
[+] EMBL CF335488 [AAAGAGCTCTCCTTTTGTACATTCGTTTGGTTCGTTGTAATATATATCCTTTGTGGATCTTGAATAAGCTCTATCCTGTCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGGTTGCCCCTTCCCAAAAGAAATTTGAAAAAAAAGGGGAAATTCCGGGCCCAAAAAAAAAAATCCCCCAAAAAGGGGGGGTAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10660#0 CTCCTCCCCCCCAAAACCACACAAACACCCGCTGCGCCGCTCGCTTCCTCCTCCCCCCCC 60
consensus_10660#1 ------------------------------------------------------------
consensus_10660#0 TCGTGCTCGACATGGCGTGCTCCCACCTGGCCGCCGCCGCCGCCGCGGCCTCCCCGGCGG 120
consensus_10660#1 ------------------------------------------------------------
consensus_10660#0 CCGCGCGTTCACCGGCGGCCTCCAGCGCCGCAACCGCGAGCGCCTTCGCGCGCCTCTCGG 180
consensus_10660#1 ------------------------------------------------------------
consensus_10660#0 CGACGCCCCGGGTCGCGAGCGGCGGGTTGGCCGTTAGGGGCCAGAGGGGTGTAGCCGCTG 240
consensus_10660#1 ------------------------------------------------------------
consensus_10660#0 TTGTCGCCGCCGCCGCCGGGGCCGCCGCGGCGACGCCCGTGGCCGACATCGAGGAACGCC 300
consensus_10660#1 ------------------------------------------------------------
consensus_10660#0 GGGCCACCGAGAAGCAGCCCATCATTGTCATCGATAACTACGACAGCTTTACCTACAACC 360
consensus_10660#1 ------------------------------------------------------------
consensus_10660#0 TCTGCCAGTATATGGGGGAGCTTGGATTGAACTTTGAGGTATATCGCAATGATGAACTTA 420
consensus_10660#1 ------------------------------------------------------------
consensus_10660#0 CCATAGAGGATGTAAAGAGGAAGAACCCAAGAGGAATACTTATTTCTCCAGGGCCTGGTG 480
consensus_10660#1 ------------------------------------------------------------
consensus_10660#0 AGCCACAAGATTCAGGTATATCATTGCAGACTGTTCTGGAACTTGGACCTACCATCCCAA 540
consensus_10660#1 ------------------------------------------------------------
consensus_10660#0 TTTTTGGTGTCTGCATGGGTCTGCAGTGTATCGGGGAAGCTTTTGGAGGAAAGATTATCC 600
consensus_10660#1 ------------------------------------------------------------
consensus_10660#0 GTGCTCCTTCTGGTGTCATGCATGGAAAAAGCTCTCCAGTTCGCTACGATGAGGAGCTAG 660
consensus_10660#1 ------------------------------------------------------------
consensus_10660#0 GGAAGGCCTTGTTCAATGGCTTGCCAAACCCATTTACCGCTGCAAGATACCATAGCTTGG 720
consensus_10660#1 ------------------------------------------------------------
consensus_10660#0 TGATCGAGCAGGAGACCTTCCCCCATGACGCTCTGGAAGCCACCGCGTGGACTGAAGATG 780
consensus_10660#1 ------------------------------------------------------------
consensus_10660#0 GCCTTATCATGGCTGCTCGCCACAAGAAGTACAGGCACATCCAGGGAGTCCAATTCCACC 840
consensus_10660#1 ------------------------------------------------------------
consensus_10660#0 CAGAGAGCATCATCACCCCAGAAGGCAAGAGGATCATTCTCAACTTCGTGAGGTTCATCG 900
consensus_10660#1 -AAAGAGC-TCTCCTTTTGTACATTCGTTTGGTTCGTTGTAATAT-----ATATCCTTTG 53
* ***** ** * * * ** ** ** * * * * * * * *
consensus_10660#0 AGGAGCTGGAG-AAGCAGCGTGCCGGAGAGAAGAACTAGTAGACGCTAGCTGTTCAGGCA 959
consensus_10660#1 TGGATCTTGAATAAGCTCTATCCTGTCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 113
*** ** ** **** * * * ** ** * * * * * *
consensus_10660#0 AAAGTAGAAAGGGGCTTAAGCCGGGTAGATTCAGGGCAGAAAGTGAAAAAGGGTAGGAGT 1019
consensus_10660#1 AAAAAAAAAAAAAA---AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 170
*** * *** ** * * * * *** ***** * *
consensus_10660#0 AATAAGGGAAAAAGAGCTCTCCTTTTGTCACATTCGTTTGGTTCGTTGTAATATATATCC 1079
consensus_10660#1 AAAAAAAAAAAAAAAAACCCCGGGTTGCCCCTTCCCAAAAGAAATTTGAAAAAAAAGGGG 230
** ** ***** * * * *** * * * * * *** ** * *
consensus_10660#0 T--TTGTGGATCTAAAAAAAGAANN-----AAAAANGAAAA------ 1113
consensus_10660#1 AAATTCCGGGCCCAAAAAAAAAAATCCCCCAAAAAGGGGGGGTAAAA 277
** ** * ******* ** ***** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||