Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 10661 cluster # 10661       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10661#0 length = 1381 sequences # 4  
consensus_10661#1 length = 1250 sequences # 1  
consensus_10661#2 length = 670 sequences # 2  

consensusID : consensus_10661#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1381
fasta sequence
                              [CAACCAGATGTTAGATTGGAGGCTGTCTCACGAGAAGCCACGTGAGGACTGTGATGAAGCTGAGCTTGATCCTACATATAGAGAATCTGTAAAGTGCAAAATATTCCTGGGATTCACTTCAAACCTTGTCTCTTCTGGCATTCGAGATGTAGTCCGTTTTCTAGTTCAGCATCACATGGTGGATGTTATTGTTACAACTGCTGGTGGTATAGAGGAGGATCTCATCAAATGTCTTGCTCCCACTTATAGAGGAGAATTTTCTTTACCTGGAACACTGTTGCGGTCAAAGGGATTGAATCGGATTGGAAATCTTTTGGTTCCCAATGATAACTATTGCAAGTTTGAGAACTGGATCATGCCACTTTTTGATCAGATGCTACAAGAGCAATCCACTGAGAATGTTTGGACACCATCGAAGGTCATAGCTTGTCTTGGCAAAGAAATAAATGATGAAAGTTCCTACCTTTATTGGGCGTATAAGAACAATATTCCTGTATACTGCCCAGCATTGACTGATGGATCGCTTGGAGACATGCTATTCTGTCATGCAGTCCGCAATCCTGGCCTAATTATTGACATTGTACAAGATATAAGATTGATGAATGGGGAAGCCATTCATGCAACCCCAAGGAAGACAGGGATCATAGTTCTTGGTGGAGGTCTACCCAAGCATCATATATGCAACGCCAATATGTTTCGCAATGGTGCAGATTATGCAGTCTATATCAACACAGCCCAAGAGTTTGATGGCAGTGATTCTGGAGCACAACCTGATGAAGCAGTTTCATGGGGAAAGATTAAAGGTTCAGCCAAACCCGTCAAGGTGCATTGTGACGCTACGATCGCTTTCCCATTAATTGTGGCTGCAACATTCGCACGCAAGTTTCACGGTGCGAAACAAGCGAACTGAATTTCTGGGTTTGAGCTAAACCGATTCCTGTCGAATTCGTCTCCCCAAGTTGAGTGTTCAGACCTCGGAGCACGGCTTGTACATCCCTTCTCAGGGATGGAGCAGGAAGGTTTTGTTGGTAGTAAAATGGTACTTACTCACGAACTGTACGGCCATGCTTGATCATCTTTCTTCATTGTGCACATTCGATCATCTTTCTTCGTGGTACACCACTGAGGCTGTAGTAGCATTTTGCTTGCGTGTTGCAGGGGACACTTCATGGAAGTTAAGACATTGTTCGCTTTGTTCATCCGCTGTTCGGATGATTTCTGACTAGTGCAAGAGGGAAAAGGATATTTATCTCACAGACCGTTTTGGATATGTACGCATTCAGCGAGAACAAATGGGTATATGTAATTTGAATTCCGTATCAATTGTTTTGCTAGGAAACAGGAAAGGAGGGAAAATGAAAAACATGAGTCCAAGCAAAAA]

[+] EMBL AK073852             [CAACCAGATGTTAGATTGGAGGCTGTCTCACGAGAAGCCACGTGAGGACTGTGATGAAGCTGAGCTTGATCCTACATATAGAGAATCTGTAAAGTGCAAAATATTCCTGGGATTCACTTCAAACCTTGTCTCTTCTGGCATTCGAGATGTAGTCCGTTTTCTAGTTCAGCATCACATGGTGGATGTTATTGTTACAACTGCTGGTGGTATAGAGGAGGATCTCATCAAATGTCTTGCTCCCACTTATAGAGGAGAATTTTCTTTACCTGGAACACTGTTGCGGTCAAAGGGATTGAATCGGATTGGAAATCTTTTGGTTCCCAATGATAACTATTGCAAGTTTGAGAACTGGATCATGCCACTTTTTGATCAGATGCTACAAGAGCAATCCACTGAGAATGTTTGGACACCATCGAAGGTCATAGCTTGTCTTGGCAAAGAAATAAATGATGAAAGTTCCTACCTTTATTGGGCGTATAAGAACAATATTCCTGTATACTGCCCAGCATTGACTGATGGATCGCTTGGAGACATGCTATTCTGTCATGCAGTCCGCAATCCTGGCCTAATTATTGACATTGTACAAGATATAAGATTGATGAATGGGGAAGCCATTCATGCAACCCCAAGGAAGACAGGGATCATAGTTCTTGGTGGAGGTCTACCCAAGCATCATATATGCAACGCCAATATGTTTCGCAATGGTGCAGATTATGCAGTCTATATCAACACAGCCCAAGAGTTTGATGGCAGTGATTCTGGAGCACAACCTGATGAAGCAGTTTCATGGGGAAAGATTAAAGGTTCAGCCAAACCCGTCAAGGTGCATTGTGACGCTACGATCGCTTTCCCATTAATTGTGGCTGCAACATTCGCACGCAAGTTTCACGGTGCGAAACAAGCGAACTGAATTTCTGGGTTTGAGCTAAACCGATTCCTGTCGAATTCGTCTCCCCAAGTTGAGTGTTCAGACCTCGGAGCACGGCTTGTACATCCCTTCTCAGGGATGGAGCAGGAAGGTTTTGTTGGTAGTAAAATGGTACTTACTCACGAACTGTACGGCCATGCTTGATCATCTTTCTTCATTGTGCACATTCGATCATCTTTCTTCGTGGTACACCACTGAGGCTGTAGTAGCATTTTGCTTGCGTGTTGCAGGGGACACTTCATGGAAGTTAAGACATTGTTCGCTTTGTTCATCCGCTGTTCGGATGATTTCTGACTAGTGCAAGAGGGAAAAGGATATTTATCTCACAGACCGTTTTGGATATGTAC                                                                                                          ]
[+] EMBL CF306146             [CAACCAGATGTTAGATTGGAGGCTGTCTCACGAGAAGCCACGTGATGTCTGTGATGAAGCTGAGCTTGATCCTACATATAGAGAATCTGTAAAGTGCAAAATATTCCTGGGATTCACTTCAAACCTTGTCTCTTCTGGCATTCGAGATGTAGTCCGTTTTCTAGTTCAGCATCACATGGTGGATGTTATTGTTACAACTGCTGGTGGTATAGAGGAGGATCTCATCAAATGTCTTGCTCCCACTTATAGAGGAGAATTTTCTTTACCTGGAACACTGTTGCGGTCAAAGGGATTGAATCGGATTGGAAATCTTTTGGTTCCCAATGATAACTATTGCAAGTTTGAGAACTGGATCATGCCACTTTTTGATCAGATGCTACAAGAGCAATCCACTGAGAATGTTTGGACACCATCGAAGGTCATAGCTTGTCTTGGCAAAGAAATAAATGATGAAAGTTCCTACCTTTATTGGGCGTATAAGAACAATATTCCTGTATACTGCCCAGCATTGACTGATGGATCGCTTGGAGACATGCTATTCTGTCATGCAGTCCGCAATCCTGGCCTAATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CF309818             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GAGCACAACCTGATGAAGCAGTTTCATGGGGAAAGATTAAAGGTTCAGCCAAACCCGTCAAGGTGCATTGTGACGCTACGATCGCTTTCCCATTAATTGTGGCTGCAACATTCGCACGCAAGTTTCACGGTGCGAAACAAGCGAACTGAATTTCTGGGTTTGAGCTAAACCGATTCCTGTCGAATTCGTCTCCCCAAGTTGAGTGTTCAGACCTCGGAGCACGGCTTGTACATCCCTTCTCAGGGATGGAGCAGGAAGGTTTTGTTGGTAGTAAAATGGTACTTACTCACGAACTGTACGGCCATGCTTGATCATCTTTCTTCATTGTGCACATTCGATCATCTTTCTTCGTGGTACACCACTGAGGCTGTAGTAGCATTTTGCTTGCGTGTTGCAGGGGACACTTCATGGAAGTTAAGACATTGTTCGCTTTGTTCATCCGCTGTTCGGATGATTTCTGACTAGTGCAAGAGGGAAAAGGATATTTATCTCACAGACCGTTTTGGATATGTACGCATTCAGCGAGAACAAATGGGTATATGTAATTTGAATTCCGTATCAATTGTTTTGCTAGGAAACAGGAAAGGAGGGAAAATGAAAAACATGAGTCCAAGCAAAAA]
[-] EMBL BE040199             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GTCAAGGTACATTGTGACGCTACGATCGCTTTCCCATTAATTGTGGCTGCAACATTCGCACGCAAGTTTCACGGTGCGAAACAAGCGAACTGAATTTCTGGGTTTGAGCTGAACCGATTCCTGTCGAATTCGTCTCCCCAAGTTGAGTGTTCAGACCTCGGAGCACGGCTTGTACATCCCTTCTCAGGGATGGAGCAGGAAGGTTTTGTTGGTAGTAAAATGGTACTTACTCACGAACTGTACGGCCATGCTTGATCATCTTTCTTCATTGTGCACATTCGATCATCTTTCTTCGTGGTACACCACTGAGGCTGTAGTAGCATTTTGCTTGCGTGTTGCAGGGGACACTTCATGGAAGTTAAGACATTGTTCGCTTTGTTCATCCGCTGTTCGGATGATTTCTGACTA                                                                                                                                                            ]


>consensus_10661#0 CAACCAGATGTTAGATTGGAGGCTGTCTCACGAGAAGCCACGTGAGGACTGTGATGAAGC TGAGCTTGATCCTACATATAGAGAATCTGTAAAGTGCAAAATATTCCTGGGATTCACTTC AAACCTTGTCTCTTCTGGCATTCGAGATGTAGTCCGTTTTCTAGTTCAGCATCACATGGT GGATGTTATTGTTACAACTGCTGGTGGTATAGAGGAGGATCTCATCAAATGTCTTGCTCC CACTTATAGAGGAGAATTTTCTTTACCTGGAACACTGTTGCGGTCAAAGGGATTGAATCG GATTGGAAATCTTTTGGTTCCCAATGATAACTATTGCAAGTTTGAGAACTGGATCATGCC ACTTTTTGATCAGATGCTACAAGAGCAATCCACTGAGAATGTTTGGACACCATCGAAGGT CATAGCTTGTCTTGGCAAAGAAATAAATGATGAAAGTTCCTACCTTTATTGGGCGTATAA GAACAATATTCCTGTATACTGCCCAGCATTGACTGATGGATCGCTTGGAGACATGCTATT CTGTCATGCAGTCCGCAATCCTGGCCTAATTATTGACATTGTACAAGATATAAGATTGAT GAATGGGGAAGCCATTCATGCAACCCCAAGGAAGACAGGGATCATAGTTCTTGGTGGAGG TCTACCCAAGCATCATATATGCAACGCCAATATGTTTCGCAATGGTGCAGATTATGCAGT CTATATCAACACAGCCCAAGAGTTTGATGGCAGTGATTCTGGAGCACAACCTGATGAAGC AGTTTCATGGGGAAAGATTAAAGGTTCAGCCAAACCCGTCAAGGTGCATTGTGACGCTAC GATCGCTTTCCCATTAATTGTGGCTGCAACATTCGCACGCAAGTTTCACGGTGCGAAACA AGCGAACTGAATTTCTGGGTTTGAGCTAAACCGATTCCTGTCGAATTCGTCTCCCCAAGT TGAGTGTTCAGACCTCGGAGCACGGCTTGTACATCCCTTCTCAGGGATGGAGCAGGAAGG TTTTGTTGGTAGTAAAATGGTACTTACTCACGAACTGTACGGCCATGCTTGATCATCTTT CTTCATTGTGCACATTCGATCATCTTTCTTCGTGGTACACCACTGAGGCTGTAGTAGCAT TTTGCTTGCGTGTTGCAGGGGACACTTCATGGAAGTTAAGACATTGTTCGCTTTGTTCAT CCGCTGTTCGGATGATTTCTGACTAGTGCAAGAGGGAAAAGGATATTTATCTCACAGACC GTTTTGGATATGTACGCATTCAGCGAGAACAAATGGGTATATGTAATTTGAATTCCGTAT CAATTGTTTTGCTAGGAAACAGGAAAGGAGGGAAAATGAAAAACATGAGTCCAAGCAAAA A



consensusID : consensus_10661#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1250
fasta sequence
                              [CAACCAGATGTTAGATTGGAGGCTGTCTCACGAGAAGCCACGTGAGGACTGTGATGAAGCTGAGCTTGATCCTACATATAGAGAATCTGTAAAGTGCAAAATATTCCTGGGATTCACTTCAAACCTTGTCTCTTCTGGCATTCGAGATGTAGTCCGTTTTCTAGTTCAGCATCACATGGTGGATGTTATTGTTACAACTGCTGGTGGTATAGAGGAGGATCTCATCAAATGTCTTGCTCCCACTTATAGAGGAGAATTTTCCTTACCTGGAACACTGTTGCGGTCAAAGGGATTGAATCGGATTGGAAATCTTTTGGTTCCCAATGATAACTATTGCAAGTTTGAGAACTGGATCATGCCACTTTTTGATCAGATGCTACAAGAGCAATCCACTGAGAATGTTTGGACACCATCGAAGGTCATAGCTTGTCTTGGCAAAGAAATAAATGATGAAAGTTCCCACCTTTATTGGGCGTATAAGAACAATATTCCTGTATACTGCCAAGCATTGACTGATGGATCGCTTGGAGACATGCTATTCTGTCATGCAGTCCGCAATCCTGGCCTAATTATTGACATTGTACAAGATATAAGATTGATGAATGGGGAAGCCATTCATGCAACCCCAAGGAAGACAGGGATCATAGTTCTTGGTGGAGGTCTACCCAAGCATCATATATGCAACGCCAATATGTTTCGCAATGGTGCAGATTATGCAGTCTATATCAACACAGCCCAAGAGTTTGATGGCAGTGATTCTGGAGCACAACCTGATGAAGCAGTTTCATGGGGAAAGATTAAAGGTTCAGCCAAACCCGTCAAGGTGCATTGTGACGCTACGATCGCTTTCCCATTAATTGTGGCTGCAACATTCGCACGCAAGTTTCACGGTGCGAAACAAGCGAACTGAATTTCTGGGTTTGAGCTAAACCGATTCCTGTCGAATTCGTCTCCCCAAGTTGAGTGTTCAGACCTCGGAGCACGGCTTGTACATCCCTTCTCAGGGATGGAGCAGGAAGGTTTTGTTGGTAGTAAAATGCATTTTGCTTGCGTGTTGCAGGGGACACTTCATGGAAGTTAAGACATTGTTCGCTTTGTTCATCCGCTGTTCGGATGATTTCTGACTAGTGCAAGAGGGAAAAGGATATTTATCTCACAGACCGTTTTGGATATGTACGCATTCAGCGAGAACAAATGGGTATATGTAATTTGAATTCCGTATCAATTGTTTTGCTAGGAAACAGGAAAGG]

[+] EMBL AK101589             [CAACCAGATGTTAGATTGGAGGCTGTCTCACGAGAAGCCACGTGAGGACTGTGATGAAGCTGAGCTTGATCCTACATATAGAGAATCTGTAAAGTGCAAAATATTCCTGGGATTCACTTCAAACCTTGTCTCTTCTGGCATTCGAGATGTAGTCCGTTTTCTAGTTCAGCATCACATGGTGGATGTTATTGTTACAACTGCTGGTGGTATAGAGGAGGATCTCATCAAATGTCTTGCTCCCACTTATAGAGGAGAATTTTCCTTACCTGGAACACTGTTGCGGTCAAAGGGATTGAATCGGATTGGAAATCTTTTGGTTCCCAATGATAACTATTGCAAGTTTGAGAACTGGATCATGCCACTTTTTGATCAGATGCTACAAGAGCAATCCACTGAGAATGTTTGGACACCATCGAAGGTCATAGCTTGTCTTGGCAAAGAAATAAATGATGAAAGTTCCCACCTTTATTGGGCGTATAAGAACAATATTCCTGTATACTGCCAAGCATTGACTGATGGATCGCTTGGAGACATGCTATTCTGTCATGCAGTCCGCAATCCTGGCCTAATTATTGACATTGTACAAGATATAAGATTGATGAATGGGGAAGCCATTCATGCAACCCCAAGGAAGACAGGGATCATAGTTCTTGGTGGAGGTCTACCCAAGCATCATATATGCAACGCCAATATGTTTCGCAATGGTGCAGATTATGCAGTCTATATCAACACAGCCCAAGAGTTTGATGGCAGTGATTCTGGAGCACAACCTGATGAAGCAGTTTCATGGGGAAAGATTAAAGGTTCAGCCAAACCCGTCAAGGTGCATTGTGACGCTACGATCGCTTTCCCATTAATTGTGGCTGCAACATTCGCACGCAAGTTTCACGGTGCGAAACAAGCGAACTGAATTTCTGGGTTTGAGCTAAACCGATTCCTGTCGAATTCGTCTCCCCAAGTTGAGTGTTCAGACCTCGGAGCACGGCTTGTACATCCCTTCTCAGGGATGGAGCAGGAAGGTTTTGTTGGTAGTAAAATGCATTTTGCTTGCGTGTTGCAGGGGACACTTCATGGAAGTTAAGACATTGTTCGCTTTGTTCATCCGCTGTTCGGATGATTTCTGACTAGTGCAAGAGGGAAAAGGATATTTATCTCACAGACCGTTTTGGATATGTACGCATTCAGCGAGAACAAATGGGTATATGTAATTTGAATTCCGTATCAATTGTTTTGCTAGGAAACAGGAAAGG]


>consensus_10661#1 CAACCAGATGTTAGATTGGAGGCTGTCTCACGAGAAGCCACGTGAGGACTGTGATGAAGC TGAGCTTGATCCTACATATAGAGAATCTGTAAAGTGCAAAATATTCCTGGGATTCACTTC AAACCTTGTCTCTTCTGGCATTCGAGATGTAGTCCGTTTTCTAGTTCAGCATCACATGGT GGATGTTATTGTTACAACTGCTGGTGGTATAGAGGAGGATCTCATCAAATGTCTTGCTCC CACTTATAGAGGAGAATTTTCCTTACCTGGAACACTGTTGCGGTCAAAGGGATTGAATCG GATTGGAAATCTTTTGGTTCCCAATGATAACTATTGCAAGTTTGAGAACTGGATCATGCC ACTTTTTGATCAGATGCTACAAGAGCAATCCACTGAGAATGTTTGGACACCATCGAAGGT CATAGCTTGTCTTGGCAAAGAAATAAATGATGAAAGTTCCCACCTTTATTGGGCGTATAA GAACAATATTCCTGTATACTGCCAAGCATTGACTGATGGATCGCTTGGAGACATGCTATT CTGTCATGCAGTCCGCAATCCTGGCCTAATTATTGACATTGTACAAGATATAAGATTGAT GAATGGGGAAGCCATTCATGCAACCCCAAGGAAGACAGGGATCATAGTTCTTGGTGGAGG TCTACCCAAGCATCATATATGCAACGCCAATATGTTTCGCAATGGTGCAGATTATGCAGT CTATATCAACACAGCCCAAGAGTTTGATGGCAGTGATTCTGGAGCACAACCTGATGAAGC AGTTTCATGGGGAAAGATTAAAGGTTCAGCCAAACCCGTCAAGGTGCATTGTGACGCTAC GATCGCTTTCCCATTAATTGTGGCTGCAACATTCGCACGCAAGTTTCACGGTGCGAAACA AGCGAACTGAATTTCTGGGTTTGAGCTAAACCGATTCCTGTCGAATTCGTCTCCCCAAGT TGAGTGTTCAGACCTCGGAGCACGGCTTGTACATCCCTTCTCAGGGATGGAGCAGGAAGG TTTTGTTGGTAGTAAAATGCATTTTGCTTGCGTGTTGCAGGGGACACTTCATGGAAGTTA AGACATTGTTCGCTTTGTTCATCCGCTGTTCGGATGATTTCTGACTAGTGCAAGAGGGAA AAGGATATTTATCTCACAGACCGTTTTGGATATGTACGCATTCAGCGAGAACAAATGGGT ATATGTAATTTGAATTCCGTATCAATTGTTTTGCTAGGAAACAGGAAAGG



consensusID : consensus_10661#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 670
fasta sequence
                              [ATGCAACGCCAATATGTTTCGCAATGGTCAGATTATCCAGTCTATATCAACACAGCCCAAGAGTTTGATGCAGTGATTCTGGAGCACAACCTGATGAACAGTTTCATGGGGAAAGATTAAAGG-TTCAGCCAAACCCGTCAA-GGTACA-TTGTGACGCTACGATCGCTTTCCCATT-AA-TTGTGGCT-GC-AACATTCGCACGCAAG-TTTCACGGTGCGAAACAAGCGAACTGAATTTCTGGGTTTGAGCTGAACCGATTCCTGTCGAATTCGTCTCCCCAAGTTGAGTGTTCAGACCTCGGAGCACGGCTTGTACATCCCTTCTCAGGGATGGAGCAGGAAGGTTTTGTTGGTAGTAAAATGGGGACACTTCATGGAAGTTAAGACATTGTTCGCTTTGTTCATCCGCTGTTCGGATGATTTCTGACTAGTGCAAGAGGGAAAAGGATATTTATCTCACAGACCGTTTTGGATATGTACGCATTCAGCGAGAACAAATGGGTATATGTAATTTGAATTCCGTATCAAAAATTTTGCTAGGAAACAGGAAAGGAGGGAAAATGAAAAACAGGAGTCCAAGCAGATTTTCTTCGGTACAGGAAAAGTTGGGATACGGGTGTCAAACTATCAAATAGAATACTCGTACATAATATATCAGAATTATACATAAAAAAA]

[+] EMBL BM419534             [ATGCAACGCCAATATGTTTCGCAATGGTCAGATTATCCAGTCTATATCAACACAGCCCAAGAGTTTGATGCAGTGATTCTGGAGCACAACCTGATGAACAGTTTCATGGGGAAAGATTAAAGG TTCAGCCAAACCCGTCAA GGTACA TTGTGACGCTACGATCGCTTTCCCATT AA TTGTGGCT GC AACATTCGCACGCAAG TTTCACGGTGCGAAACAAGCGAACTGAATTTCTGGGTTTGAGCTGAACCGATTCCTGTCGAATTCGTCTCCCCAAGTTGAGTGTTCAGACCTCGGAGCACGGCTTGTACATCCCTTCTCAGGGATGGAGCAGGAAGGTTTTGTTGGTAGTAAAATGGGGACACTTCATGGAAGTTAAGACATTGTTCGCTTTGTTCATCCGCTGTTCGGATGATTTCTGACTAGTGCAAGAGGGAAAAGGATATTTATCTCACAGACCGTTTTGGATATGTACGCATTCAGCGAGAACAAATGGGTATATGTAATTTGAATTCCGTATCAAAAA                                                                                                                                                ]
[+] EMBL BI810583             [                                                                                                                     TAAAGGTTTCAGCCAAACCCGTCAAGGGTACATTTGTGACGCTACGATCGCTTTCCCATTGAATTTGT GCTGGCAAACATTCGCACGCAAGTTTTCACGGTGCGAAACAA CGAACTGAATTTCTGGGTTTGAGCTGAACCGATTCCTGTCGAATTCGTCTCCCCAAGTTGAGTGTTCAGACCTCGGAGCACGGCTTGTACATCCCTTCTCAGGGATGGAGCAGGAAGGTTTTGTTGGTAGTAAAATGGGGACACTTCATGGAAGTTAAGACATTGTTCGCTTTGTTCATCCGCTGTTCGGATGATTTCTGACTAGTGCAAGAGGGAAAAGGATATTTATCTCACAGACCGTTTTGGATATGTACGCATTCAGCGAGAACAAATGGGTATATGTAATTTGAATTCCGTATCAATTGTTTTGCTAGGAAACAGGAAAGGAGGGAAAATGAAAAACAGGAGTCCAAGCAGATTTTCTTCGGTACAGGAAAAGTTGGGATACGGGTGTCAAACTATCAAATAGAATACTCGTACATAATATATCAGAATTATACATAAAAAAA]


>consensus_10661#2 ATGCAACGCCAATATGTTTCGCAATGGTCAGATTATCCAGTCTATATCAACACAGCCCAA GAGTTTGATGCAGTGATTCTGGAGCACAACCTGATGAACAGTTTCATGGGGAAAGATTAA AGGTTCAGCCAAACCCGTCAAGGTACATTGTGACGCTACGATCGCTTTCCCATTAATTGT GGCTGCAACATTCGCACGCAAGTTTCACGGTGCGAAACAAGCGAACTGAATTTCTGGGTT TGAGCTGAACCGATTCCTGTCGAATTCGTCTCCCCAAGTTGAGTGTTCAGACCTCGGAGC ACGGCTTGTACATCCCTTCTCAGGGATGGAGCAGGAAGGTTTTGTTGGTAGTAAAATGGG GACACTTCATGGAAGTTAAGACATTGTTCGCTTTGTTCATCCGCTGTTCGGATGATTTCT GACTAGTGCAAGAGGGAAAAGGATATTTATCTCACAGACCGTTTTGGATATGTACGCATT CAGCGAGAACAAATGGGTATATGTAATTTGAATTCCGTATCAAAAATTTTGCTAGGAAAC AGGAAAGGAGGGAAAATGAAAAACAGGAGTCCAAGCAGATTTTCTTCGGTACAGGAAAAG TTGGGATACGGGTGTCAAACTATCAAATAGAATACTCGTACATAATATATCAGAATTATA CATAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10661#0      CAACCAGATGTTAGATTGGAGGCTGTCTCACGAGAAGCCACGTGAGGACTGTGATGAAGC 60
consensus_10661#1      CAACCAGATGTTAGATTGGAGGCTGTCTCACGAGAAGCCACGTGAGGACTGTGATGAAGC 60
consensus_10661#2      ------------------------------------------------------------
                                                                                   

consensus_10661#0      TGAGCTTGATCCTACATATAGAGAATCTGTAAAGTGCAAAATATTCCTGGGATTCACTTC 120
consensus_10661#1      TGAGCTTGATCCTACATATAGAGAATCTGTAAAGTGCAAAATATTCCTGGGATTCACTTC 120
consensus_10661#2      ------------------------------------------------------------
                                                                                   

consensus_10661#0      AAACCTTGTCTCTTCTGGCATTCGAGATGTAGTCCGTTTTCTAGTTCAGCATCACATGGT 180
consensus_10661#1      AAACCTTGTCTCTTCTGGCATTCGAGATGTAGTCCGTTTTCTAGTTCAGCATCACATGGT 180
consensus_10661#2      ------------------------------------------------------------
                                                                                   

consensus_10661#0      GGATGTTATTGTTACAACTGCTGGTGGTATAGAGGAGGATCTCATCAAATGTCTTGCTCC 240
consensus_10661#1      GGATGTTATTGTTACAACTGCTGGTGGTATAGAGGAGGATCTCATCAAATGTCTTGCTCC 240
consensus_10661#2      ------------------------------------------------------------
                                                                                   

consensus_10661#0      CACTTATAGAGGAGAATTTTCTTTACCTGGAACACTGTTGCGGTCAAAGGGATTGAATCG 300
consensus_10661#1      CACTTATAGAGGAGAATTTTCCTTACCTGGAACACTGTTGCGGTCAAAGGGATTGAATCG 300
consensus_10661#2      ------------------------------------------------------------
                                                                                   

consensus_10661#0      GATTGGAAATCTTTTGGTTCCCAATGATAACTATTGCAAGTTTGAGAACTGGATCATGCC 360
consensus_10661#1      GATTGGAAATCTTTTGGTTCCCAATGATAACTATTGCAAGTTTGAGAACTGGATCATGCC 360
consensus_10661#2      ------------------------------------------------------------
                                                                                   

consensus_10661#0      ACTTTTTGATCAGATGCTACAAGAGCAATCCACTGAGAATGTTTGGACACCATCGAAGGT 420
consensus_10661#1      ACTTTTTGATCAGATGCTACAAGAGCAATCCACTGAGAATGTTTGGACACCATCGAAGGT 420
consensus_10661#2      ------------------------------------------------------------
                                                                                   

consensus_10661#0      CATAGCTTGTCTTGGCAAAGAAATAAATGATGAAAGTTCCTACCTTTATTGGGCGTATAA 480
consensus_10661#1      CATAGCTTGTCTTGGCAAAGAAATAAATGATGAAAGTTCCCACCTTTATTGGGCGTATAA 480
consensus_10661#2      ------------------------------------------------------------
                                                                                   

consensus_10661#0      GAACAATATTCCTGTATACTGCCCAGCATTGACTGATGGATCGCTTGGAGACATGCTATT 540
consensus_10661#1      GAACAATATTCCTGTATACTGCCAAGCATTGACTGATGGATCGCTTGGAGACATGCTATT 540
consensus_10661#2      ------------------------------------------------------------
                                                                                   

consensus_10661#0      CTGTCATGCAGTCCGCAATCCTGGCCTAATTATTGACATTGTACAAGATATAAGATTGAT 600
consensus_10661#1      CTGTCATGCAGTCCGCAATCCTGGCCTAATTATTGACATTGTACAAGATATAAGATTGAT 600
consensus_10661#2      ------------------------------------------------------------
                                                                                   

consensus_10661#0      GAATGGGGAAGCCATTCATGCAACCCCAAGGAAGACAGGGATCATAGTTCTTGGTGGAGG 660
consensus_10661#1      GAATGGGGAAGCCATTCATGCAACCCCAAGGAAGACAGGGATCATAGTTCTTGGTGGAGG 660
consensus_10661#2      ------------------------------------------------------------
                                                                                   

consensus_10661#0      TCTACCCAAGCATCATATATGCAACGCCAATATGTTTCGCAATGGTGCAGATTATGCAGT 720
consensus_10661#1      TCTACCCAAGCATCATATATGCAACGCCAATATGTTTCGCAATGGTGCAGATTATGCAGT 720
consensus_10661#2      ------------------ATGCAACGCCAATATGTTTCGCAATGGT-CAGATTATCCAGT 41
                                         **************************** ******** ****

consensus_10661#0      CTATATCAACACAGCCCAAGAGTTTGATGGCAGTGATTCTGGAGCACAACCTGATGAAGC 780
consensus_10661#1      CTATATCAACACAGCCCAAGAGTTTGATGGCAGTGATTCTGGAGCACAACCTGATGAAGC 780
consensus_10661#2      CTATATCAACACAGCCCAAGAGTTTGATG-CAGTGATTCTGGAGCACAACCTGATGAA-C 99
                       ***************************** **************************** *

consensus_10661#0      AGTTTCATGGGGAAAGATTAAAGGTTCAGCCAAACCCGTCAAGGTGCATTGTGACGCTAC 840
consensus_10661#1      AGTTTCATGGGGAAAGATTAAAGGTTCAGCCAAACCCGTCAAGGTGCATTGTGACGCTAC 840
consensus_10661#2      AGTTTCATGGGGAAAGATTAAAGGTTCAGCCAAACCCGTCAAGGTACATTGTGACGCTAC 159
                       ********************************************* **************

consensus_10661#0      GATCGCTTTCCCATTAATTGTGGCTGCAACATTCGCACGCAAGTTTCACGGTGCGAAACA 900
consensus_10661#1      GATCGCTTTCCCATTAATTGTGGCTGCAACATTCGCACGCAAGTTTCACGGTGCGAAACA 900
consensus_10661#2      GATCGCTTTCCCATTAATTGTGGCTGCAACATTCGCACGCAAGTTTCACGGTGCGAAACA 219
                       ************************************************************

consensus_10661#0      AGCGAACTGAATTTCTGGGTTTGAGCTAAACCGATTCCTGTCGAATTCGTCTCCCCAAGT 960
consensus_10661#1      AGCGAACTGAATTTCTGGGTTTGAGCTAAACCGATTCCTGTCGAATTCGTCTCCCCAAGT 960
consensus_10661#2      AGCGAACTGAATTTCTGGGTTTGAGCTGAACCGATTCCTGTCGAATTCGTCTCCCCAAGT 279
                       *************************** ********************************

consensus_10661#0      TGAGTGTTCAGACCTCGGAGCACGGCTTGTACATCCCTTCTCAGGGATGGAGCAGGAAGG 1020
consensus_10661#1      TGAGTGTTCAGACCTCGGAGCACGGCTTGTACATCCCTTCTCAGGGATGGAGCAGGAAGG 1020
consensus_10661#2      TGAGTGTTCAGACCTCGGAGCACGGCTTGTACATCCCTTCTCAGGGATGGAGCAGGAAGG 339
                       ************************************************************

consensus_10661#0      TTTTGTTGGTAGTAAAATGGTACTTACTCACGAACTGTACGGCCATGCTTGATCATCTTT 1080
consensus_10661#1      TTTTGTTGGTAGTAAAATG----------------------------------------- 1039
consensus_10661#2      TTTTGTTGGTAGTAAAATG----------------------------------------- 358
                       *******************                                         

consensus_10661#0      CTTCATTGTGCACATTCGATCATCTTTCTTCGTGGTACACCACTGAGGCTGTAGTAGCAT 1140
consensus_10661#1      ---------------------------------------------------------CAT 1042
consensus_10661#2      ------------------------------------------------------------
                                                                                   

consensus_10661#0      TTTGCTTGCGTGTTGCAGGGGACACTTCATGGAAGTTAAGACATTGTTCGCTTTGTTCAT 1200
consensus_10661#1      TTTGCTTGCGTGTTGCAGGGGACACTTCATGGAAGTTAAGACATTGTTCGCTTTGTTCAT 1102
consensus_10661#2      ------------------GGGACACTTCATGGAAGTTAAGACATTGTTCGCTTTGTTCAT 400
                                         ******************************************

consensus_10661#0      CCGCTGTTCGGATGATTTCTGACTAGTGCAAGAGGGAAAAGGATATTTATCTCACAGACC 1260
consensus_10661#1      CCGCTGTTCGGATGATTTCTGACTAGTGCAAGAGGGAAAAGGATATTTATCTCACAGACC 1162
consensus_10661#2      CCGCTGTTCGGATGATTTCTGACTAGTGCAAGAGGGAAAAGGATATTTATCTCACAGACC 460
                       ************************************************************

consensus_10661#0      GTTTTGGATATGTACGCATTCAGCGAGAACAAATGGGTATATGTAATTTGAATTCCGTAT 1320
consensus_10661#1      GTTTTGGATATGTACGCATTCAGCGAGAACAAATGGGTATATGTAATTTGAATTCCGTAT 1222
consensus_10661#2      GTTTTGGATATGTACGCATTCAGCGAGAACAAATGGGTATATGTAATTTGAATTCCGTAT 520
                       ************************************************************

consensus_10661#0      CAATTGTTTTGCTAGGAAACAGGAAAGGAGGGAAAATGAAAAACATGAGTCCAAGCAAAA 1380
consensus_10661#1      CAATTGTTTTGCTAGGAAACAGGAAAGG-------------------------------- 1250
consensus_10661#2      CAAAAATTTTGCTAGGAAACAGGAAAGGAGGGAAAATGAAAAACAGGAGTCCAAGCAGAT 580
                       ***   **********************                                

consensus_10661#0      A----------------------------------------------------------- 1381
consensus_10661#1      ------------------------------------------------------------
consensus_10661#2      TTTCTTCGGTACAGGAAAAGTTGGGATACGGGTGTCAAACTATCAAATAGAATACTCGTA 640
                                                                                   

consensus_10661#0      ------------------------------
consensus_10661#1      ------------------------------
consensus_10661#2      CATAATATATCAGAATTATACATAAAAAAA 670
                                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)