These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10663#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1059 fasta sequence [TCCCCTTCGCTGGCATCCGCTCGTCCAGACCACCGCCGCCGTCCGCCGGCCGCTTCCCCTTCGCCGCCGGGAGCAAGATC-GGCGGCGGGGGCTCGTCGGGATCTGCCCCCATCCATGGACTCGCTTGGCGCCGCTTCTGATTGCTCCGCCTCGCGTTGATGCGCTGCGCGCGGCATCGAGCCACAAGGTTTTCCTCATATTAATCAATAATCATGGCGCTTAGCAAGGTTGAAGTGAACTTGTTAAGGTTGCTTGAGGCAGCTCCTCGGCAGCAGAACCAGGCTAAACTTGTCCATTATGTAACCACAGCCAGGGAATTGTTGGAGCAGCTAGGAGCAGAAACTACTCCAGAAGGGATATCAAGTGTATCAAAAGCTAAGATAAGTGAGTATTCAGAAAAGATTGAAGCATTGGCTGCCCGGCTTGCTGTTCCAGAGCCAGAAAATGAAGTGCCAGTTGATGAGAATAGAGAGGTAGAAAGCTCTTATGAAGGAGAAAAGCCAGGAAGTCCAATATCATTATCATCAGGATTACGTAGGAGACCAATAGCTCACACCGATGTTGGACCTAGCAGTCATGCGAGAAAGGATAGAGACATTGGAACACCTATTAAATTGGATGCAGAAGCGCAGGCTCACATTGAGAAGCATAGGAAGCTACAAGAAGATCTGACTGACGAAATGGTTGAGTTAGCACGCCAACTGAAAGAGAGCAGTCTCACCATGCACCAATCTGTTCAAGAAACAGAGAAGATCCTTGATTCCACCGAGAGAGCTGTTGAGCATAGCTTGGCGAGCACTGGGCGTGCAGCCACGCGAGCAGCAGAGGTGTACTCGTTGGCTTCCAAGACGACATGCTTCCAGTGGCTGCTCATCTTCATGATGACATGCATGTTCATTATGGTGGTTTTGCTCATCCGGGTCACCTGAGTTATAGCTGCGTCCGCCGAAATATTGAACTAGTATCTGATGATTCTGTTTGACATTGAGTTTTGTATTCAGTTCTGACATGAACATGAACGGAAACAAAGAAAAGAAAACAAAAACGTTTGGAAAAAAA] [+] EMBL AK073691 [TCCCCTTCGCTGGCATCCGCTCGTCCAGACCACCGCCGCCGTCCGCCGGCCGCTTCCCCTTCGCCGCCGGGAGCAAGATCAGGCGGCGGGGGCTCGTCGGGATCTGCCCCCATCCATGGACTCGCTTGGCGCCGCTTCTGATTGCTCCGCCTCGCGTTGATGCGCTGCGCGCGGCATCGAGCCACAAGGTTTTCCTCATATTAATCAATAATCATGGCGCTTAGCAAGGTTGAAGTGAACTTGTTAAGGTTGCTTGAGGCAGCTCCTCGGCAGCAGAACCAGGCTAAACTTGTCCATTATGTAACCACAGCCAGGGAATTGTTGGAGCAGCTAGGAGCAGAAACTACTCCAGAAGGGATATCAAGTGTATCAAAAGCTAAGATAAGTGAGTATTCAGAAAAGATTGAAGCATTGGCTGCCCGGCTTGCTGTTCCAGAGCCAGAAAATGAAGTGCCAGTTGATGAGAATAGAGAGGTAGAAAGCTCTTATGAAGGAGAAAAGCCAGGAAGTCCAATATCATTATCATCAGGATTACGTAGGAGACCAATAGCTCACACCGATGTTGGACCTAGCAGTCATGCGAGAAAGGATAGAGACATTGGAGCACCTATTAAATTGGATGCAGAAGCGCAGGCTCACATTGAGAAGCATAGGAAGCTACAAGAAGATCTGACTGACGAAATGGTTGAGTTAGCACGCCAACTGAAAGAGAGCAGTCTCACCATGCACCAATCTGTTCAAGAAACAGAGAAGATCCTTGATTCCACCGAGAGAGCTGTTGAGCATAGCTTGGCGAGCACTGGGCGTGCAGCCACGCGAGCAGCAGAGGTGTACTCGTTGGCTTCCAAGACGACATGCTTCCAGTGGCTGCTCATCTTCATGATGACATGCATGTTCATTATGGTGGTTTTGCTCATCCGGGTCACCTGAGTTATAGCTGCGTCCGCCGAAATATTGAACTAGTATCTGATGATTCTGTTTGACATTGAGTTTTGTATTCAGTTCTGACATGAACATGAACGGAAACAAAGAAAAGAAAACAA ] [+] EMBL CF310329 [ CATCCGCTCGTCCAGACCACCGCCGCCGTCCGCCGGCCGCTTCCCCTTCGCCGCCGGGAGCAAGATC GGCGGCGGGGGCTCGTCGGGATCTGCCCCCATCCATGGACTCGCTTGGCGCCGCTTCTGATTGCTCCGCCTCGCGTTGATGCGCTGCGCGCGGCATCGAGCCACAAGGTTTTCCTCATATTAATCAATAATCATGGCGCTTAGCAAGGTTGAAGTGAACTTGTTAAGGTTGCTTGAGGCAGCTCCTCGGCAGCAGAACCAGGCTAAACTTGTCCATTATGTAACCACAGCCAGGGAATTGTTGGAGCAGCTAGGAGCAGAAACTACTCCAGAAGGGATATCAAGTGTATCAAAAGCTAAGATAAGTGAGTATTCAGAAAAGATTGAAGCATTGGCTGCCCGGCTTGCTGTTCCAGAGCCAGAAAATGAAGTGCCAGTTGATGAGAATAGAGAGGTAGAAAGCTCTTATGAAGGAGAAAAGCCAGGAAGTCCAATATCATTATCATCAGGATTACGTAGGAGACCAATAGCTCACACCGATGTTGGACCTAGCAGTCATGCGAGAAAGGATAGAGACATTGGAACACCTATTAAATTGGATGCAGAAGCGCAGGCTCACATTGAGAAG ] [+] EMBL CF312955 [ CATCCGCTCGTCCAGACCACCGCCGCCGTCCGCCGGCCGCTTCCCCTTCGCCGCCGGGAGCAAGATC GGCGGCGGGGGCTCGTCGGGATCTGCCCCCATCCATGGACTCGCTTGGCGCCGCTTCTGATTGCTCCGCCTCGCGTTGATGCGCTGCGCGCGGCATCGAGCCACAAGGTTTTCCTCATATTAATCAATAATCATGGCGCTTAGCAAGGTTGAAGTGAACTTGTTAAGGTTGCTTGAGGCAGCTCCTCGGCAGCAGAACCAGGCTAAACTTGTCCATTATGTAACCACAGCCAGGGAATTGTTGGAGCAGCTAGGAGCAGAAACTACTCCAGAAGGGATATCAAGTGTATCAAAAGCTAAGATAAGTGAGTATTCAGAAAAGATTGAAGCATTGGCTGCCCGGCTTGCTGTTCCAGAGCCAGAAAATGAAGTGCCAGTTGATGAGAATAGAGAGGTAGAAAGCTCTTATGAAGGAGAAAAGCCAGGAAGTCCAATATCATTATCATCAGGATTACGTAGGAGACCAATAGCTCACACCGATGTTGGACCTAGCAGTCATGCGAGAAAGGATAGAGACATTGGAACACCTATT ] [-] EMBL CF310330 [ AGCCAGGAAGTCCAATATCATTATCATCAGGATTACGTAGGAGACCAATAGCTCACACCGATGTTGGACCTAGCAGTCATGCGAGAAAGGATAGAGACATTGGAACACCTATTAAATTGGATGCAGAAGCGCAGGCTCACATTGAGAAGCATAGGAAGCTACAAGAAGATCTGACTGACGAAATGGTTGAGTTAGCACGCCAACTGAAAGAGAGCAGTCTCACCATGCACCAATCTGTTCAAGAAACAGAGAAGATCCTTGATTCCACCGAGAGAGCTGTTGAGCATAGCTTGGCGAGCACTGGGCGTGCAGCCACGCGAGCAGCAGAGGTGTACTCGTTGGCTTCCAAGACGACATGCTTCCAGTGGCTGCTCATCTTCATGATGACATGCATGTTCATTATGGTGGTTTTGCTCATCCGGGTCACCTGAGTTATAGCTGCGTCCGCCGAAATATTGAACTAGTATCTGATGATTCTGTTTGACATTGAGTTTTGTATTCAGTTCTGACATGAACATGAACGGAAACAAAGAAAAGAAAACAAAAACGTTTGGAAAAAAA] [-] EMBL CF312956 [ CCAATATCATTATCATCAGGATTACGTAGGAGACCAATAGCTCACACCGATGTTGGACCTAGCAGTCATGCGAGAAAGGATAGAGACATTGGAACACCTATTAAATTGGATGCAGAAGCGCAGGCTCACATTGAGAAGCATAGGAAGCTACAAGAAGATCTGACTGACGAAATGGTTGAGTTAGCACGCCAACTGAAAGAGAGCAGTCTCACCATGCACCAATCTGTTCAAGAAACAGAGAAGATCCTTGATTCCACCGAGAGAGCTGTTGAGCATAGCTTGGCGAGCACTGGGCGTGCAGCCACGCGAGCAGCAGAGGTGTACTCGTTGGCTTCCAAGACGACATGCTTCCAGTGGCTGCTCATCTTCATGATGACATGCATGTTCATTATGGTGGTTTTGCTCATCCGGGTCACCTGAGTTATAGCTGCGTCCGCCGAAATATTGAACTAGTATCTGATGATTCTGTTTGACATTGAGTTTTGTATTCAGTTCTGACATGAACATGAACGGAAACAAAGAAAAGAAAACAAAAACGTTTGGAAAAAAA] consensusID : consensus_10663#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 751 fasta sequence [ACCGCGTCCGACCGCCGACGCGACCGGCGGCGACCCTCCCTCTTCAGCCGTTCGCCGGACTTGCGGCCAGACAGATCCCCTTCGCCGCCGGGAGCAAGATCAGGCGGTGTCCGCGGCGGGGCTCGTCGGGATCTGCCCCCATCCATGGTCGCGCGGCGCCGCTTCTGACTGCTCCGCCCCCGCGTTGATGCGCTGCCCGCGGCATCGAGCCGCAAGGTTTTTGTCATATTAATCATGGTGCTTAGCAAGGTTGAAGTGAACTTGATAAGGCTGCTTGAGGCAGCTCCTCGACAGCAGAACCAGACTAAGCTTGTCCATTATGTAACCACAGCCAGGGAACTGTTGGAGCAGCTAGGATCAGAAACTACTCTAGAAGGGATATCAAGTGTATCAAAAGCTAAGACAAGTGAGTATTCAGAAAAGATTGAAGCATTGGCTGCCCGGCTTGCTGCTCCAGAGCCAGAAAATGAAATGCCAGTTGATGAGAATAGAGAGGTAGAAAGCTCTTATGAAGGAGATAAGCCAGGAAGTCCAATATCATTATCATCAGGATTACGTAGGAGACCAATGTAAGTTTTAAAATTTGTATGTTTCTTTTTCATAATTATTACAATTAGCGAGCTAATAATGGATGTAAATTGTATGTTCTTTTACATATGTTTGATGAATTGTAACTGAACACATTTATCTTTTCTATGGACCCTTTGTATATTACTAAATCCGGTTTGAATGAATTTGTATGTACTGAACT] [+] EMBL AK066324 [ACCGCGTCCGACCGCCGACGCGACCGGCGGCGACCCTCCCTCTTCAGCCGTTCGCCGGACTTGCGGCCAGACAGATCCCCTTCGCCGCCGGGAGCAAGATCAGGCGGTGTCCGCGGCGGGGCTCGTCGGGATCTGCCCCCATCCATGGTCGCGCGGCGCCGCTTCTGACTGCTCCGCCCCCGCGTTGATGCGCTGCCCGCGGCATCGAGCCGCAAGGTTTTTGTCATATTAATCATGGTGCTTAGCAAGGTTGAAGTGAACTTGATAAGGCTGCTTGAGGCAGCTCCTCGACAGCAGAACCAGACTAAGCTTGTCCATTATGTAACCACAGCCAGGGAACTGTTGGAGCAGCTAGGATCAGAAACTACTCTAGAAGGGATATCAAGTGTATCAAAAGCTAAGACAAGTGAGTATTCAGAAAAGATTGAAGCATTGGCTGCCCGGCTTGCTGCTCCAGAGCCAGAAAATGAAATGCCAGTTGATGAGAATAGAGAGGTAGAAAGCTCTTATGAAGGAGATAAGCCAGGAAGTCCAATATCATTATCATCAGGATTACGTAGGAGACCAATGTAAGTTTTAAAATTTGTATGTTTCTTTTTCATAATTATTACAATTAGCGAGCTAATAATGGATGTAAATTGTATGTTCTTTTACATATGTTTGATGAATTGTAACTGAACACATTTATCTTTTCTATGGACCCTTTGTATATTACTAAATCCGGTTTGAATGAATTTGTATGTACTGAACT] consensusID : consensus_10663#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence [TGGAGTACCTATTAAATTGGATGAAGAAGCACAGGCTCATATTGAGAAGCATAGGAACTGCAAGAAGATCTGACTGACGAAATGGTTGAGTTAGCGCGCCAACTGAAAGAGAGCAGTCTCACCATGCACCAATCTGTTCAAGAAACAGAGAAGATCCTTGATTCCACCGAGAGAGCTGTCGAGCATAGCTTGGCGAGCACTGGGCGTGCAACCACACGAGCAGCAGAGGTATACTCGCTGGCTTCCAAGACGACATGCTTCCAGTGGCTGCTCATCTTCATGATGACCTGCATGTTCATTATGGTGGTTCTGCTCATCCGGGTCACCTAAAATATTGTAATTGGTGTTGTTTGAGACTGACTGATTGAGTTTTGTATTCAGTTGTGACAATGAGCATGAACGGAAACGAAGTAAAAAAAAAAAGTTTGGAGAAAAA] [+] EMBL BI813258 [TGGAGTACCTATTAAATTGGATGAAGAAGCACAGGCTCATATTGAGAAGCATAGGAACTGCAAGAAGATCTGACTGACGAAATGGTTGAGTTAGCGCGCCAACTGAAAGAGAGCAGTCTCACCATGCACCAATCTGTTCAAGAAACAGAGAAGATCCTTGATTCCACCGAGAGAGCTGTCGAGCATAGCTTGGCGAGCACTGGGCGTGCAACCACACGAGCAGCAGAGGTATACTCGCTGGCTTCCAAGACGACATGCTTCCAGTGGCTGCTCATCTTCATGATGACCTGCATGTTCATTATGGTGGTTCTGCTCATCCGGGTCACCTAAAATATTGTAATTGGTGTTGTTTGAGACTGACTGATTGAGTTTTGTATTCAGTTGTGACAATGAGCATGAACGGAAACGAAGTAAAAAAAAAAAGTTTGGAGAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10663#0 TCCCCTTCGCTGGCATCCGCTCGTCCAGACCACCGCCGCCGTCCGCCGGCCGCTTCCCCT 60 consensus_10663#2 ------------------------------------------------------------ consensus_10663#1 ------------------------------------------------------------ consensus_10663#0 TCGCCGCCGGGAGCAAGATCGGCGGCGGGGGCTCGTCGGGATCTGCCCCCATCCATGGAC 120 consensus_10663#2 ------------------------------------------------------------ consensus_10663#1 ------------------------------------------------------------ consensus_10663#0 TCGCTTGGCGCCGCTTCTGATTGCTCCGCCTCGCGTTGATGCGCTGCGCGCGGCATCGAG 180 consensus_10663#2 ------------------------------------------------------------ consensus_10663#1 ------------------------------------------------------------ consensus_10663#0 CCACAAGGTTTTCCTCATATTAATCAATAATCATGGCGCTTAGCAAGGTTGAAGTGAACT 240 consensus_10663#2 ------------------------------------------------------------ consensus_10663#1 ------------------------------------------------------------ consensus_10663#0 TGTTAAGGTTGCTTGAGGCAGCTCCTCGGCAGCAGAACCAGGCTAAACTTGTCCATTATG 300 consensus_10663#2 ------------------------------------------------------------ consensus_10663#1 ------------------------------------------------------------ consensus_10663#0 TAACCACAGCCAGGGAATTGTTGGAGCAGCTAGGAGCAGAAACTACTCCAGAAGGGATAT 360 consensus_10663#2 ------------------------------------------------------------ consensus_10663#1 ------------------------------------------------------------ consensus_10663#0 CAAGTGTATCAAAAGCTAAGATAAGTGAGTATTCAGAAAAGATTGAAGCATTGGCTGCCC 420 consensus_10663#2 ------------------------------------------------------------ consensus_10663#1 --------------------------------------------------ACCGCGTCCG 10 consensus_10663#0 GGCTTGCTGTTCCAGAGCCAGAAAATGAAGTGCCAGTTGATGAGAATAGAGAGGTAGAAA 480 consensus_10663#2 ------------------------------------------------------------ consensus_10663#1 ACCGCCGACGCGACCGGCGGCGACCCTCCCTCTTCAGCCGTTCGCCGGACTTGCGGCCAG 70 consensus_10663#0 GCTCTTATGAAGGAGAAAAGCCAGGAAGTCCAATATCATTATCATCAGGATTACGTAGGA 540 consensus_10663#2 ------------------------------------------------------------ consensus_10663#1 ACAGATCCCCTTCGCCGCCGGGAGCAAGATCAGGCGGTGTCCGCGGCGGGGCTCGTCGGG 130 consensus_10663#0 GACCAATAGCTCACACCGATGTTGGACCTAGCAGTCATGCGAGAAAGGATAGAGACATTG 600 consensus_10663#2 ----------------------------------------------------------TG 2 consensus_10663#1 ATCTGCCCCCATCCATGGTCGCGCGGCGCCGCTTCTGACTGCTCCGCCCCCGCGTTGATG 190 ** consensus_10663#0 GAACACCTATTAAATTGGATGCAGAAGCGCAGGCTCACATTGA----GAAGCATAGGAAG 656 consensus_10663#2 GAGTACCTATTAAATTGGATGAAGAAGCACAGGCTCATATTGA----GAAGCATAGGAA- 57 consensus_10663#1 CGCTGCCCGCGGCATCGAGCCGCAAGGTTTTTG-TCATATTAATCATGGTGCTTAGCAAG 249 ** ** * * * * *** *** * * ** *** ** consensus_10663#0 CTACAAGAAGATCTGACTGACGAAATGGTTGAGTTAGCAC---GCCAACTGAAAGAGAGC 713 consensus_10663#2 CTGCAAGAAGATCTGACTGACGAAATGGTTGAGTTAGCGC---GCCAACTGAAAGAGAGC 114 consensus_10663#1 GTTGAAGTGAACTTGATAA---GGCTGCTTGAGGCAGCTCCTCGACAGCAGAACCAGACT 306 * *** * *** ** ***** *** * * ** * *** *** consensus_10663#0 AGTCT----CACCATGCA-------CCAATCTGTTCAAGAAACAGAGAAGATCCTTGATT 762 consensus_10663#2 AGTCT----CACCATGCA-------CCAATCTGTTCAAGAAACAGAGAAGATCCTTGATT 163 consensus_10663#1 AAGCTTGTCCATTATGTAACCACAGCCAGGGAACTGTTGGAGCAGCTAGGATCAGAAACT 366 * ** ** *** * *** * * * *** * **** * * consensus_10663#0 CCACCGAGAGAGCTGTTGAGCATAGCTTG-GCGAGCAC---TGGGCGTGCAGCCACGCGA 818 consensus_10663#2 CCACCGAGAGAGCTGTCGAGCATAGCTTG-GCGAGCAC---TGGGCGTGCAACCACACGA 219 consensus_10663#1 ACTCTAGAAGGGATATCAAGTGTATCAAAAGCTAAGACAAGTGAGTATTCAGAAAAGATT 426 * * ** * * * ** ** * ** * ** ** * * ** * consensus_10663#0 GCAGCAGAGGTGTACTCGTTGGCT--TCCAAGACGACATGCTTCCAGTGGCTGCTCATCT 876 consensus_10663#2 GCAGCAGAGGTATACTCGCTGGCT--TCCAAGACGACATGCTTCCAGTGGCTGCTCATCT 277 consensus_10663#1 GAAGCATTGGCTGCCCGGCTTGCTGCTCCAGAGCCAGAAAATGA-AATGCCAGTTGATGA 485 * **** ** * * * *** **** * * * * * ** * * * ** consensus_10663#0 TCATGATGACATGCATGTTCATTATGGTGGTTTTGCTCATCCGGGTCACCTGAGTT-ATA 935 consensus_10663#2 TCATGATGACCTGCATGTTCATTATGGTGGTTCTGCTCATCCGGGTCACCTAAAAT-ATT 336 consensus_10663#1 GAATAGAGAGGTAGAAAGCTCTTATGAAGGA---GATAAGCCAGGAAGTCCAATATCATT 542 ** ** * * ***** ** * * * ** ** * * * ** consensus_10663#0 GCTGCGTCCGCCGAAATATTGAACTAGTATC-TGATGATTCTGTTTGACATTGAGTTTTG 994 consensus_10663#2 GT-------------------AATTGGTGTT-GTTTGAGACTGACTG--ATTGAGTTTTG 374 consensus_10663#1 ATCATCAG-GATTACGTAGGAGACCAATGTAAGTTTTAAAATTTGTATGTTTCTTTTTCA 601 * * * * * * * ** *** consensus_10663#0 TATTCAGTTCTGACA-TGAAC-ATGAACGGAAACAAAGAAAAGAAAAC---AAAAACGTT 1049 consensus_10663#2 TATTCAGTTGTGACAATGAGC-ATGAACGGAAACGAAGTAAAAAAAAA---AA----GTT 426 consensus_10663#1 TAATTATTACAATTAGCGAGCTAATAATGGATGTAAATTGTATGTTCTTTTACATATGTT 661 ** * * * * ** * * ** *** ** * * *** consensus_10663#0 TGGAAAAAAA-------------------------------------------------- 1059 consensus_10663#2 TGGAGAAAAA-------------------------------------------------- 436 consensus_10663#1 TGATGAATTGTAACTGAACACATTTATCTTTTCTATGGACCCTTTGTATATTACTAAATC 721 ** ** consensus_10663#0 ------------------------------ consensus_10663#2 ------------------------------ consensus_10663#1 CGGTTTGAATGAATTTGTATGTACTGAACT 751 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||