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Oryza sativa
cluster # 10671 cluster # 10671       Sequences # 8       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10671#0 length = 1488 sequences # 5  
consensus_10671#1 length = 813 sequences # 2  
consensus_10671#2 length = 670 sequences # 1  

consensusID : consensus_10671#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1488
fasta sequence
                              [CCCCTACGCCTCCGCCGCCGCCGCCGCCGCCGCAATGAACTCCGGAGACGCCGAGGCAGCAGCGGCCTCCAAGAAGGCCCGGTGCAAGAAGGAGAAGAAAAAGAAGCGAAAGGACGACTGCGGAGCCGCAGAGGCTTCAGCGGCTGACGAAGAAATCGTCCACGACAAGAAGAGGAAGAAGCAGCTGCAACAGAAGAAGAACGGAGATGACGTGGCGGTTCCGAATCGGAAGACCACGGTGAGCATCGCCGTCGCCGGATCCATCATCGACAACGCCCAGTCCCTCGAGCTCGCCACCCTCCTGGCAGGACAAATCGCCCGCGCGGCGACCGTCTTCCGCATCGACGAGGTTGTGGTCTTCGACAGCAATTCCTCAGTGGAGAACAGCGGCGATGACGTAGAGAGTGGCGCGCGCTTCCTTGTTCGCATCCTACAGTATCTGGAGACTCCACAATACCTGCGCCGACGCCTTTTCCCGATGCACAACAACTTGAAGTTTGTGGGGTTGCTGCCCCCACTCGATGCACCACACCATTTGCGCAAGCATGAGTGGTCTGAATTTCGTGA----AGGCGTAACATTGGATGGGGATCGTTCAATGGGGACATTTGTTGATGTCGGATTGAGTAAGAATGTTCTGGTTGAGCAAATGCTAGAACCAGGGAAGAGAGTAACTATTGCCATGGGTACCAATCGTGACATTACAACAGCTTGCAAAAGGAAAATTGTTTCCCCTT-CCTCTCCCAGGGATGAAATGGAATTGTATTGGGGCTATAAGGTCCGGTATGCTTCAAATTTGGGTGGAGTTTTCAGTGATTCACCATACAAGGAAGGATATGATTATATCATTGGTACTTCAGAGCATGGAAAGATCATTAGTTCATCTGAGCTGATCTTACCTTCCTTTAGGCACCTTTTAATTGCATTTGGTGGATTGGCTGGTCTAGAAGAATGCATTGAAGAAGATAGAAATTTGAAGGGTAAAGGTGTAGATGATGTATTTAATACCTATTTGAATACATGTCCCAGTCAAGGGAGCAGAACAATAAGAACGGAGGAAGCACTTCTCATCTCTCTCCAATACTTCCAAGACCCCATTAGGCGAGCTGGATAGCAAATGTGGGAACAGTTGCAAACTTAACAATTAGATGCAAAACGAAAGGTGTGCTAGTGTGGTTCAATTCCCTCGGTGGAATATGCTCATGGTCATTATGTTCCAGTGAAAAGGCACTTCATCTTCAGTGATCTCAACACTTATTTTCGAACACCTGTGTTTATTTCACTGAAAGAGAGCTTTAGGCGGTCGTTTACCCATTTCAACTATTGAAATCTTTTTGCTGGGCAAACCTTGGGCAGGTAGATTGTTTCGTGCCTAAGAGCAGCTATGGACAGTTGTTAAACGCTTATTGGGTAGCCATGTTTTAGTGAAGATTGTTTTCTGACCATCCAATTGCATCTATCCCAAATCATGATATACATATAAATTAAATC]

[+] EMBL AK065922             [CCCCTACGCCTCCGCCGCCGCCGCCGCCGCCGCAATGAACTCCGGAGACGCCGAGGCAGCAGCGGCCTCCAAGAAGGCCCGGTGCAAGAAGGAGAAGAAAAAGAAGCGAAAGGACGACTGCGGAGCCGCAGAGGCTTCAGCGGCTGACGAAGAAATCGTCCACGACAAGAAGAGGAAGAAGCAGCTGCAACAGAAGAAGAACGGAGATGACGTGGCGGTTCCGAATCGGAAGACCACGGTGAGCATCGCCGTCGCCGGATCCATCATCGACAACGCCCAGTCCCTCGAGCTCGCCACCCTCCTGGCAGGACAAATCGCCCGCGCGGCGACCGTCTTCCGCATCGACGAGGTTGTGGTCTTCGACAGCAATTCCTCAGTGGAGAACAGCGGCGATGACGTAGAGAGTGGCGCGCGCTTCCTTGTTCGCATCCTACAGTATCTGGAGACTCCACAATACCTGCGCCGACGCCTTTTCCCGATGCACAACAACTTGAAGTTTGTGGGGTTGCTGCCCCCACTCGATGCACCACACCATTTGCGCAAGCATGAGTGGTCTGAATTTCGTGA    AGGCGTAACATTGGATGGGGATCGTTCAATGGGGACATTTGTTGATGTCGGATTGAGTAAGAATGTTCTGGTTGAGCAAATGCTAGAACCAGGGAAGAGAGTAACTATTGCCATGGGTACCAATCGTGACATTACAACAGCTTGCAAAAGGAAAATTGTTTCCCCTT CCTCTCCCAGGGATGAAATGGAATTGTATTGGGGCTATAAGGTCAGGTATGCTTCAAATTTGGGTGGAGTTTTCAGTGATTCACCATACAAGGAAGGATATGATTATATCATTGGTACTTCAGAGCATGGAAAGATCATTAGTTCATCTGAGCTGATCTTACCTTCCTTTAGGCACCTTTTAATTGCGTTTGGTGGATTGGCTGGTCTAGAAGAATGCATTGAAGAAGATAGAAATTTGAAGGGTAAAGGTGTAGATGATGTATTTAATACCTATTTGAATACATGTCCCAGTCAAGGGAGCAGAACAATAAGAACGGAGGAAGCACTTCTCATCTCTCTCCAATACTTCCAAGACCCCATTAGGCGAGCTGGATAGCAAATGTGGGAACAGTTGCAAACTTAACAATTAGATGCAAAACGAAAGGTGTGCTAGTGTGGTTCAATTCCCTCGGTGGAATATGCTCATGGTCATTATGTTCCAGTGAAAAGGCACTTCATCTTCAGTGATCTCAACACTTATTTTCGAACACCTGTGTTTATTTCACTGAAAGAGAGCTTTAGGCGGTCGTTTACCCATTTCAACTATTGAAATCTTTTTGCTGGGCAAACCTTGGGCAGGTAGATTGTTTCGTGCCTAAGAGCAGCTATGGACAGTTGTTAAACGCTTATTGGGTAGCCATGTTTTAGTGAAGATTGTTTTCTGACCATCCAATTGCATCTATCCCAAATCATGATATACATATAAA       ]
[+] EMBL BP184506             [     ACGCCTCCGCCGCCGCCGCCGCCGCCGCAATGAACTCCGGAGACGCCGAGGCAGCAGCGGCCTCCAAGAAGGCCCGGTGCAAGAAGGAGAAGAAAAAGAAGCGAAAGGACGACTGCGGAGCCGCAGAGGCTTCAGCGGCTGACGAAGAAATCGTCCACGACAAGAAGAGGAAGAAGCAGCTGCAACAGAAGAAGAACGGAGATGACGTGGCGGTTCCGAATCGGAAGACCACGGTGAGCATCGCCGTCGCCGGATCCATCATCGACAACGCCCAGTCCCTCGAGCTCGCCACCCTCCTGGCAGGACAAATCGCCCGCGCGGCGACCGTCTTCCGCATCGACGAGGTTGTGGTCTTCGACAGCAATTCCTCAGTGGAGAACAGCGGCGATGACGTAGAGAGTGGCGCGCGCTT CTTGTTCGCATCCTACAGTATCTGGAGACTCCACAATACCTGCGCCGACGCCTTTTCCCGATGCACAACAACTTGAAGTTTGTGGGGTTGCTGCCCCCACTCGATGCACCACACCATTTGCGCAAGCATGAATGGTCTGAATTTCGTGA    AGGCGTAACATTGGATGGGGATCGTTCAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB676201             [               CGCCGCCGCCGCCGCCGCAATGAACTCCGGAGACGCCGAGGCAGCAGCGGCCTCCAAGAAGGCCCGGTGCAAGAAGGAGAAGAAAAAGAAGCGAAAGGACGACTGCGGAGCCGCAGAGGCTTCAGCGGCTGACGAAGAAATCGTCCACGACAAGAAGAGGAAGAAGCAGCTGCAACAGAAGAAGAACGGAGATGACGTGGCGGTTCCGAATCGGAAGACCACGGTGAGCATCGCCGTCGCCGGATCCATCATCGACAACGCCCAGTCCCTCGAGCTCGCCACCCTCCTGGCAGGACAAATCGCCCGCGCGGCGACCGTCTTCCGCATCGACGAGGTTGTGGTCTTCGACAGCAATTCCTCAGTGGAGAACAGCGGCGATGACGTAGAGAGTGGCGCGCGCTTCCTTGTTCGCATCCTACAGTATCTGGAGACTCCACAATACCTGCGCCGACGCCTTTTCCCGATGCACAACAACTTGAAGTTTGTGGGGTTGCTGCCCCCACTCGATGCACCACACCATTTGCGCAAGCATGAGTGGTCTGAATTTCGTGAAGACAGGCGTAACATTGGATGGGGATCGTTCAATGGGGACATTTGTTGATGTCGGATTGAGTAAGAATGTTCTGGTTGAGCAAATGCTAGAACCAGGGAAGAGAGTAACTATTGCCATGGGTACCAATCGTGACATTACCACAGCTTGCAAAAGGAAAATTGTTTCCCCTT CCTCTCCCAGGGATGAAATGGAATTGTATTGGGGCTATAAGGTCCGGTATGCTTCAAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CB676202             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CCCTTCCCTCTCCCAGGGATGAAATGGAATTGTATTGGGGCTATAAGGTCCGGTATGCTTCAAATTTGGGTGGAGTTTTCAGTGATTCACCATACAAGGAAGGATATGATTATATCATTGGTACTTCAGAGCATGGAAAGATCATTAGTTCATCTGAGCTGATCTTACCTTCCTTTAGGCACCTTTTAATTGCATTTGGTGGATTGGCTGGTCTAGAAGAATGCATTGAAGAAGATAGAAATTTGAAGGGTAAAGGTGTAGATGATGTATTTAATACCTATTTGAATACATGTCCCAGTCAAGGGAGCAGAACAATAAGAACGGAGGAAGCACTTCTCATCTCTCTCCAATACTTCCAAGACCCCATTAGGCGAGCTGGATAGCAAATGTGGGAACAGTTGCAAACTTAACAATTAGATGCAAAACGAAAGGTGTGCTAGTGTGGTTCAATTCCCTCGGTGGAATATGCTCATGGTCATTATGTTCCAGTGAAAAGGCACTTCATCTTCAGTGATCTCAACACTTATTTTCGAACACCTGTGTTTATTTCACTGAAAGAGAGCTTTAGGCGGTCGTTTACCCATTTCAACTATTGAAATCTTTTTGCTGGGCAAACCTTGGGCAGGTAGATTGTTTCGTGCCTAAGAGCAGCTATGGACAGTTGTTAAACGCTTATTGGGTAGCCATGTTTTAGTGAAGATTGTTTTCTGACCATCCAATTGCATCTATCCCAAATCATGATATACATATAAATTAAATC]
[-] EMBL CB652959             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GTATTGGGGCTATAAGGTCCGGTATGCTTCAAATTTGGGTGGAGTTTTCAGTGATTCCCCATAC    AAGGATATGATTATATCATTGGTACTTCAGAGCATGGAAAGATCATTAGTTCATCTGAGCTGATCTTACCTTCCTTTAGGCACCTTTTAATTGCATTTGGTGGATTGGCTGGTCTAGAAGAATGCATTGAAGAAGATAGAAATTTGAAGGGTAAAGGTGTAGATGATGTATTTAATACCTATTTGAATACATGTCCCAGTCAAGGGAGCAGACCAATAAGAACGGAGGAAGCACTTCTCATCTCTCTCCAATACTTCCAAGACCCCATTAGGCGAGCTGGATAGCAAATGTGGGAACAGTTGCAAACTTAACAATTAGATGCAAAACGAAAGGTGTGCTAGTGTGGTTCAATTCCCTCGGTGGAATATGCTCATGGTCATTATGTTCCAGTGAAAAGGCACTTCATCTTCAGTGATCTCAACACTTATTTTCGAACACCTGTGTTTATTTCACTGAAAGAGAGCTTTAGGCGGTCGTTTACCCATTTCAACTATTGAAATCTTTTTGCTGGGCAACCCGGGGGCAGGTAGATTGTTTCGTGCCTAAGAGCAGCTATGGc                                                                                                      ]


>consensus_10671#0 CCCCTACGCCTCCGCCGCCGCCGCCGCCGCCGCAATGAACTCCGGAGACGCCGAGGCAGC AGCGGCCTCCAAGAAGGCCCGGTGCAAGAAGGAGAAGAAAAAGAAGCGAAAGGACGACTG CGGAGCCGCAGAGGCTTCAGCGGCTGACGAAGAAATCGTCCACGACAAGAAGAGGAAGAA GCAGCTGCAACAGAAGAAGAACGGAGATGACGTGGCGGTTCCGAATCGGAAGACCACGGT GAGCATCGCCGTCGCCGGATCCATCATCGACAACGCCCAGTCCCTCGAGCTCGCCACCCT CCTGGCAGGACAAATCGCCCGCGCGGCGACCGTCTTCCGCATCGACGAGGTTGTGGTCTT CGACAGCAATTCCTCAGTGGAGAACAGCGGCGATGACGTAGAGAGTGGCGCGCGCTTCCT TGTTCGCATCCTACAGTATCTGGAGACTCCACAATACCTGCGCCGACGCCTTTTCCCGAT GCACAACAACTTGAAGTTTGTGGGGTTGCTGCCCCCACTCGATGCACCACACCATTTGCG CAAGCATGAGTGGTCTGAATTTCGTGAAGGCGTAACATTGGATGGGGATCGTTCAATGGG GACATTTGTTGATGTCGGATTGAGTAAGAATGTTCTGGTTGAGCAAATGCTAGAACCAGG GAAGAGAGTAACTATTGCCATGGGTACCAATCGTGACATTACAACAGCTTGCAAAAGGAA AATTGTTTCCCCTTCCTCTCCCAGGGATGAAATGGAATTGTATTGGGGCTATAAGGTCCG GTATGCTTCAAATTTGGGTGGAGTTTTCAGTGATTCACCATACAAGGAAGGATATGATTA TATCATTGGTACTTCAGAGCATGGAAAGATCATTAGTTCATCTGAGCTGATCTTACCTTC CTTTAGGCACCTTTTAATTGCATTTGGTGGATTGGCTGGTCTAGAAGAATGCATTGAAGA AGATAGAAATTTGAAGGGTAAAGGTGTAGATGATGTATTTAATACCTATTTGAATACATG TCCCAGTCAAGGGAGCAGAACAATAAGAACGGAGGAAGCACTTCTCATCTCTCTCCAATA CTTCCAAGACCCCATTAGGCGAGCTGGATAGCAAATGTGGGAACAGTTGCAAACTTAACA ATTAGATGCAAAACGAAAGGTGTGCTAGTGTGGTTCAATTCCCTCGGTGGAATATGCTCA TGGTCATTATGTTCCAGTGAAAAGGCACTTCATCTTCAGTGATCTCAACACTTATTTTCG AACACCTGTGTTTATTTCACTGAAAGAGAGCTTTAGGCGGTCGTTTACCCATTTCAACTA TTGAAATCTTTTTGCTGGGCAAACCTTGGGCAGGTAGATTGTTTCGTGCCTAAGAGCAGC TATGGACAGTTGTTAAACGCTTATTGGGTAGCCATGTTTTAGTGAAGATTGTTTTCTGAC CATCCAATTGCATCTATCCCAAATCATGATATACATATAAATTAAATC



consensusID : consensus_10671#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 813
fasta sequence
                              [ATCGTTCAATGGGGACATTTGTTGATGTCGGATTGAGTAAGAATGTTCTGGTTGAGCAAATGCTAGAACCAGGGAAGAGAGTAACTATTGCCATGGGTACCAATCGTGACATTACAACAGCTTGCAAAAGGAAAATTGTTTCCCCTTCCTCTCCCAGGGATGAAATGGAATTGTATTGGGGCTATAAGGTCCGGTATGCTTCAAATTTGGGTGGAGTTTTCAGTGATTCACCATACAAGGAAGGATATGATTATATCATTGGTACTTCAGAGCATGGAAAGATCATTAGTTCATCTGAGCTGATCTTACCTTCCTTTAGGGTAAAGGTGTAGATGATGGTATTTAATACCTATTTGAATACATGTCCCAGTCAAGGGAGCAGGACCAATAAGGACGGAGGAAGCACTTCTCATCTCTCTCCAATACTTCCAAGACCCCATTAGGCNAGCTGGATAGCAAATGTGGGAACAGTTGCAAACTTAACAATTAGATGCAAAACGAAAGGTGTGCTAGTGTGGTTCAATTCCCTCGGTGGAATATGCTCATGGTCATTATGTTCCAGTGAAAAGGCACTTCATCTTCAGTGATCTCAACACTTATTTTCGAACACCTGTGTTTATTTCNCTGAAAGAGAGCTTTAGGCGGTCGTTTACCCATTTCAACTATTGAAATCTTTTTGCTGGGCAAACCTTGGGCAGGTAGATTGTTTCGTGCCTAANAGCAGCTATGGACAGTTGTTAAACGCTTATTGGGTAGCCATGTTTTAGTGAAGATTGTTTTCTGNCCATCCAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL OSS11182A            [ATCGTTCAATGGGGACATTTGTTGATGTCGGATTGAGTAAGAATGTTCTGGTTGAGCAAATGCTAGAACCAGGGAAGAGAGTAACTATTGCCATGGGTACCAATCGTGACATTACAACAGCTTGCAAAAGGAAAATTGTTTCCCCTTCCTCTCCCAGGGATGAAATGGAATTGTATTGGGGCTATAAGGTCCGGTATGCTTCAAATTTGGGTGGAGTTTTCAGTGATTCACCATACAAGGAAGGATATGATTATATCATTGGTACTTCAGAGCATGGAAAGATCATTAGTTCATCTGAGCTGATCTTACCTTCCTTTAGGGTAAAGGTGTAGATGATGGTATTTAATACCTATTTGAATACATGTCCCAGTCAAGGGAGCAGGACCAATAAGGACGGAGGAAGCACTTCTCATCTCTC                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU086016             [                                                                                                                                                                                                                                                    ATATGATTATATCATTGGTACTTCAGAGCATGGAAAGNTCATTAGTTCATCTGAGCTGATCTTACCTTCCTTTAGGGTAAAGGTGTAGATGAT GTATTTAATACCTATTTGAATACATGTCCCAGTCAAGGGAGCA GACCAATAAGAACGNAGGAAGCACTTCTCATCTCTCTCCAATACTTCCAAGACCCCATTAGGCNAGCTGGATAGCAAATGTGGGAACAGTTGCAAACTTAACAATTAGATGCAAAACGAAAGGTGTGCTAGTGTGGTTCAATTCCCTCGGTGGAATATGCTCATGGTCATTATGTTCCAGTGAAAAGGCACTTCATCTTCAGTGATCTCAACACTTATTTTCGAACACCTGTGTTTATTTCNCTGAAAGAGAGCTTTAGGCGGTCGTTTACCCATTTCAACTATTGAAATCTTTTTGCTGGGCAAACCTTGGGCAGGTAGATTGTTTCGTGCCTAANAGCAGCTATGGACAGTTGTTAAACGCTTATTGGGTAGCCATGTTTTAGTGAAGATTGTTTTCTGNCCATCCAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_10671#1 ATCGTTCAATGGGGACATTTGTTGATGTCGGATTGAGTAAGAATGTTCTGGTTGAGCAAA TGCTAGAACCAGGGAAGAGAGTAACTATTGCCATGGGTACCAATCGTGACATTACAACAG CTTGCAAAAGGAAAATTGTTTCCCCTTCCTCTCCCAGGGATGAAATGGAATTGTATTGGG GCTATAAGGTCCGGTATGCTTCAAATTTGGGTGGAGTTTTCAGTGATTCACCATACAAGG AAGGATATGATTATATCATTGGTACTTCAGAGCATGGAAAGATCATTAGTTCATCTGAGC TGATCTTACCTTCCTTTAGGGTAAAGGTGTAGATGATGGTATTTAATACCTATTTGAATA CATGTCCCAGTCAAGGGAGCAGGACCAATAAGGACGGAGGAAGCACTTCTCATCTCTCTC CAATACTTCCAAGACCCCATTAGGCNAGCTGGATAGCAAATGTGGGAACAGTTGCAAACT TAACAATTAGATGCAAAACGAAAGGTGTGCTAGTGTGGTTCAATTCCCTCGGTGGAATAT GCTCATGGTCATTATGTTCCAGTGAAAAGGCACTTCATCTTCAGTGATCTCAACACTTAT TTTCGAACACCTGTGTTTATTTCNCTGAAAGAGAGCTTTAGGCGGTCGTTTACCCATTTC AACTATTGAAATCTTTTTGCTGGGCAAACCTTGGGCAGGTAGATTGTTTCGTGCCTAANA GCAGCTATGGACAGTTGTTAAACGCTTATTGGGTAGCCATGTTTTAGTGAAGATTGTTTT CTGNCCATCCAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_10671#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 670
fasta sequence
                              [GAACTCCGGAGACGCCGAGGCAGCAGCGGCCTCCAAGAAGGCCCGGCGCAAGAAGGAGAAGAAAAAGAAGCGAAAGGACGACTGCGGAGCCGCAGAGGCTTCAGCGGCTGACGAAGAAATCGTCCACGACAAGAAGAGGAAGAAGCAGCTGCAACAGAAGAAGAACGGAGATGACGTGGCGGTTCCGAATCGGAAGACCACGGTGAGCATCGCCGTCGCCGGATCCATCATCGACAACGCCCAGTCCCTCGAGCTCGCCACCCTCCTGGCAGGACAAATCGCCCGCGCGGCGACCGTCTTCCGCATCGACGAGGTTGTGGTCTTCGACAGCAATTCCTCAGTGGAGAACAGCGGCGATGACGTAGAGAGTGGCGCGCGCTTCCTTGTTCGCATCCTACAGTATCTGGAGACTCCACAATACCTGCGCCGACGCCTTTTCCCGATGCACAACAACTTGAAGTTTGTGGGGTTGCTGCCCCCACTCGATGCACCACACCATTTGCGCAAGCATGAGTGGTCTGAATTTCGTGAAGAATGTTCTGGTTGAGCAAATGCTACAACCAGGGAAGAGAGTAACTATTGCCATGGGTACCAATCGTGACATTACAACAGCTTGCAAAAGGAAAATTGTTTCCCCCTTCCCTCTCCCAGGGATGAAATGGAATTGTAT]

[+] EMBL CB652958             [GAACTCCGGAGACGCCGAGGCAGCAGCGGCCTCCAAGAAGGCCCGGCGCAAGAAGGAGAAGAAAAAGAAGCGAAAGGACGACTGCGGAGCCGCAGAGGCTTCAGCGGCTGACGAAGAAATCGTCCACGACAAGAAGAGGAAGAAGCAGCTGCAACAGAAGAAGAACGGAGATGACGTGGCGGTTCCGAATCGGAAGACCACGGTGAGCATCGCCGTCGCCGGATCCATCATCGACAACGCCCAGTCCCTCGAGCTCGCCACCCTCCTGGCAGGACAAATCGCCCGCGCGGCGACCGTCTTCCGCATCGACGAGGTTGTGGTCTTCGACAGCAATTCCTCAGTGGAGAACAGCGGCGATGACGTAGAGAGTGGCGCGCGCTTCCTTGTTCGCATCCTACAGTATCTGGAGACTCCACAATACCTGCGCCGACGCCTTTTCCCGATGCACAACAACTTGAAGTTTGTGGGGTTGCTGCCCCCACTCGATGCACCACACCATTTGCGCAAGCATGAGTGGTCTGAATTTCGTGAAGAATGTTCTGGTTGAGCAAATGCTACAACCAGGGAAGAGAGTAACTATTGCCATGGGTACCAATCGTGACATTACAACAGCTTGCAAAAGGAAAATTGTTTCCCCCTTCCCTCTCCCAGGGATGAAATGGAATTGTAT]


>consensus_10671#2 GAACTCCGGAGACGCCGAGGCAGCAGCGGCCTCCAAGAAGGCCCGGCGCAAGAAGGAGAA GAAAAAGAAGCGAAAGGACGACTGCGGAGCCGCAGAGGCTTCAGCGGCTGACGAAGAAAT CGTCCACGACAAGAAGAGGAAGAAGCAGCTGCAACAGAAGAAGAACGGAGATGACGTGGC GGTTCCGAATCGGAAGACCACGGTGAGCATCGCCGTCGCCGGATCCATCATCGACAACGC CCAGTCCCTCGAGCTCGCCACCCTCCTGGCAGGACAAATCGCCCGCGCGGCGACCGTCTT CCGCATCGACGAGGTTGTGGTCTTCGACAGCAATTCCTCAGTGGAGAACAGCGGCGATGA CGTAGAGAGTGGCGCGCGCTTCCTTGTTCGCATCCTACAGTATCTGGAGACTCCACAATA CCTGCGCCGACGCCTTTTCCCGATGCACAACAACTTGAAGTTTGTGGGGTTGCTGCCCCC ACTCGATGCACCACACCATTTGCGCAAGCATGAGTGGTCTGAATTTCGTGAAGAATGTTC TGGTTGAGCAAATGCTACAACCAGGGAAGAGAGTAACTATTGCCATGGGTACCAATCGTG ACATTACAACAGCTTGCAAAAGGAAAATTGTTTCCCCCTTCCCTCTCCCAGGGATGAAAT GGAATTGTAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10671#0      CCCCTACGCCTCCGCCGCCGCCGCCGCCGCCGCAATGAACTCCGGAGACGCCGAGGC-AG 59
consensus_10671#2      ------------------------------------GAACTCCGGAGACGCCGAGGC-AG 23
consensus_10671#1      -----------------------ATCGTTCAATGGGGACATTTGTTGATGTCGGATTGAG 37
                                                           **  *  *  ** * **     **

consensus_10671#0      CAGCGGCCTCCAAGAAGGCCCGGTGCAAGAAGGAGAAGAAAAAGAAGCGAAAGG-ACGAC 118
consensus_10671#2      CAGCGGCCTCCAAGAAGGCCCGGCGCAAGAAGGAGAAGAAAAAGAAGCGAAAGG-ACGAC 82
consensus_10671#1      TAAGAATGTTCTGGTTGAGCAAATGCTAGAACCAGGGAAGAGAGTAACTATTGCCATGGG 97
                        *      * *  *  *  *    ** ****  **   * * ** * * *  *  * *  

consensus_10671#0      TGCGGAGCCGCAGAGGCTTCAGCGGCTGACGAAG---AAATCGTCCACGACAAGAAGAGG 175
consensus_10671#2      TGCGGAGCCGCAGAGGCTTCAGCGGCTGACGAAG---AAATCGTCCACGACAAGAAGAGG 139
consensus_10671#1      TACCAA-TCGT-GACATTACAACAGCTTGCAAAAGGAAAATTGTTTCCCCTTCCTCTCCC 155
                       * *  *  **  **   * ** * ***  * **    **** **   *            

consensus_10671#0      AAGAAGCAGCTGCAACAGAAGAAGAACGGAGATGACGTGGCGGTTCCGAATCGGA----A 231
consensus_10671#2      AAGAAGCAGCTGCAACAGAAGAAGAACGGAGATGACGTGGCGGTTCCGAATCGGA----A 195
consensus_10671#1      AGGGATGAAATGGAATTGTATTGGGGCTATAAGGTCCGGTATGCTTCAAATTTGGGTGGA 215
                       * * *  *  ** **  * *   *  *    * * *  *   * * * ***  *     *

consensus_10671#0      GACCACGGTGAG-CATCGC-CGTCGCCGGATCC------ATCATCGACAACGCCCAGTCC 283
consensus_10671#2      GACCACGGTGAG-CATCGC-CGTCGCCGGATCC------ATCATCGACAACGCCCAGTCC 247
consensus_10671#1      GTTTTCAGTGATTCACCATACAAGGAAGGATATGATTATATCATTGGTACTTCAGAGCAT 275
                       *    * ****  ** *   *   *  ****        ***** *  *   *  **   

consensus_10671#0      CTCGAGCTCGCCA--CCCTCCTGGCAGGACAAATCGCCCGCGCGGCGACCGTCTTCCGCA 341
consensus_10671#2      CTCGAGCTCGCCA--CCCTCCTGGCAGGACAAATCGCCCGCGCGGCGACCGTCTTCCGCA 305
consensus_10671#1      GGAAAGATCATTAGTTCATCTGAGCTGATCTTACCTTCCTTTAGGGTAAAGGTGTAGATG 335
                           ** **   *   * **   ** *  *  * *  **    **  *  *   *     

consensus_10671#0      TCGACGAGGTTGTGGTCTTCGACAGCAATTCCTCAGT--GGAGAACAGCGGCGATGACGT 399
consensus_10671#2      TCGACGAGGTTGTGGTCTTCGACAGCAATTCCTCAGT--GGAGAACAGCGGCGATGACGT 363
consensus_10671#1      ATGGT-ATTTAATACCTATTTGAATACATGTCCCAGTCAAGGGAGCAGGACCAATAAGGA 394
                         *   *  *  *     *    *   **  * ****   * ** ***   * ** * * 

consensus_10671#0      AGAGAGTGGCGCGCGCTTCCTTGTTCGCAT-CCTACAGTATCT------GGAGACTCCAC 452
consensus_10671#2      AGAGAGTGGCGCGCGCTTCCTTGTTCGCAT-CCTACAGTATCT------GGAGACTCCAC 416
consensus_10671#1      CGGAGGAAGCACTTCTCATCTCTCTCCAATACTTCCAAGACCCCATTAGGCNAGCTGGAT 454
                        *   *  ** *       **   **  ** * * **  * *       *    **  * 

consensus_10671#0      AATACCTGCGCCGACGCCT-----TTTCCCGATGCACAACAACTTGAAGTTTGTGGGGTT 507
consensus_10671#2      AATACCTGCGCCGACGCCT-----TTTCCCGATGCACAACAACTTGAAGTTTGTGGGGTT 471
consensus_10671#1      AGCAAATGTGGGAACAGTTGCAAACTTAACAATTAGATGCAAAACGAAAGGTGTGCTAGT 514
                       *  *  ** *   **   *      **  * **      ***   ***   ****    *

consensus_10671#0      GCTGCCC---CCACTCGATGCACCACAC-------CATT---------TGCGCAAGCA-- 546
consensus_10671#2      GCTGCCC---CCACTCGATGCACCACAC-------CATT---------TGCGCAAGCA-- 510
consensus_10671#1      GTGGTTCAATTCCCTCGGTGGAATATGCTCATGGTCATTATGTTCCAGTGAAAAGGCACT 574
                       *  *  *    * **** ** *  *  *       ****         **   * ***  

consensus_10671#0      ------TGAGTGGTCTGAA-------TTTCGTGAAGGCGTAACATTGGATGGGGATCGTT 593
consensus_10671#2      ------TGAGTGGTCTGAA-------TTTCGTGAAG------------------------ 533
consensus_10671#1      TCATCTTCAGTGATCTCAACACTTATTTTCGAACACCTGTGTTTATTTCNCTGAAAGAGA 634
                             * **** *** **       *****   *                         

consensus_10671#0      CAATGGGGACATTTGTTGATGTCGGATTGAGTAAGAATGTTCTGGTTGAGCAAATGCTA- 652
consensus_10671#2      -----------------------------------AATGTTCTGGTTGAGCAAATGCTA- 557
consensus_10671#1      GCTTTAGGCGGTCGTTTACCCATTTCAACTATTGAAATCTTTTTGCTGGGCAAACCTTGG 694
                                                          *** ** * * ** *****   *  

consensus_10671#0      -GAACCAGGGAA----GAGAGTAACTATTGCCATGGGTACCAATCGTGACATTAC--AAC 705
consensus_10671#2      -CAACCAGGGAA----GAGAGTAACTATTGCCATGGGTACCAATCGTGACATTAC--AAC 610
consensus_10671#1      GCAGGTAGATTGTTTCGTGCCTAANAGCAGCTATGGACAGTTGTTAAACGCTTATTGGGT 754
                         *   **        * *  ***     ** ****  *    *       ***      

consensus_10671#0      AGCT-TGCAAAAG-GAAAATTGTTTCCCCTT--CCTCTCCCAGGGATGAAATGGAATTGT 761
consensus_10671#2      AGCT-TGCAAAAG-GAAAATTGTTTCCCCCTTCCCTCTCCCAGGGATGAAATGGAATTGT 668
consensus_10671#1      AGCCATGTTTTAGTGAAGATTGTTTTCTGNC--CATCCAAAAAAAAAAAAAAAAAAAAAA 812
                       ***  **    ** *** ******* *      * **    *   *  ***   **    

consensus_10671#0      ATTGGGGCTATAAGGTCCGGTATGCTTCAAATTTGGGTGGAGTTTTCAGTGATTCACCAT 821
consensus_10671#2      AT---------------------------------------------------------- 670
consensus_10671#1      A----------------------------------------------------------- 813
                       *                                                           

consensus_10671#0      ACAAGGAAGGATATGATTATATCATTGGTACTTCAGAGCATGGAAAGATCATTAGTTCAT 881
consensus_10671#2      ------------------------------------------------------------
consensus_10671#1      ------------------------------------------------------------
                                                                                   

consensus_10671#0      CTGAGCTGATCTTACCTTCCTTTAGGCACCTTTTAATTGCATTTGGTGGATTGGCTGGTC 941
consensus_10671#2      ------------------------------------------------------------
consensus_10671#1      ------------------------------------------------------------
                                                                                   

consensus_10671#0      TAGAAGAATGCATTGAAGAAGATAGAAATTTGAAGGGTAAAGGTGTAGATGATGTATTTA 1001
consensus_10671#2      ------------------------------------------------------------
consensus_10671#1      ------------------------------------------------------------
                                                                                   

consensus_10671#0      ATACCTATTTGAATACATGTCCCAGTCAAGGGAGCAGAACAATAAGAACGGAGGAAGCAC 1061
consensus_10671#2      ------------------------------------------------------------
consensus_10671#1      ------------------------------------------------------------
                                                                                   

consensus_10671#0      TTCTCATCTCTCTCCAATACTTCCAAGACCCCATTAGGCGAGCTGGATAGCAAATGTGGG 1121
consensus_10671#2      ------------------------------------------------------------
consensus_10671#1      ------------------------------------------------------------
                                                                                   

consensus_10671#0      AACAGTTGCAAACTTAACAATTAGATGCAAAACGAAAGGTGTGCTAGTGTGGTTCAATTC 1181
consensus_10671#2      ------------------------------------------------------------
consensus_10671#1      ------------------------------------------------------------
                                                                                   

consensus_10671#0      CCTCGGTGGAATATGCTCATGGTCATTATGTTCCAGTGAAAAGGCACTTCATCTTCAGTG 1241
consensus_10671#2      ------------------------------------------------------------
consensus_10671#1      ------------------------------------------------------------
                                                                                   

consensus_10671#0      ATCTCAACACTTATTTTCGAACACCTGTGTTTATTTCACTGAAAGAGAGCTTTAGGCGGT 1301
consensus_10671#2      ------------------------------------------------------------
consensus_10671#1      ------------------------------------------------------------
                                                                                   

consensus_10671#0      CGTTTACCCATTTCAACTATTGAAATCTTTTTGCTGGGCAAACCTTGGGCAGGTAGATTG 1361
consensus_10671#2      ------------------------------------------------------------
consensus_10671#1      ------------------------------------------------------------
                                                                                   

consensus_10671#0      TTTCGTGCCTAAGAGCAGCTATGGACAGTTGTTAAACGCTTATTGGGTAGCCATGTTTTA 1421
consensus_10671#2      ------------------------------------------------------------
consensus_10671#1      ------------------------------------------------------------
                                                                                   

consensus_10671#0      GTGAAGATTGTTTTCTGACCATCCAATTGCATCTATCCCAAATCATGATATACATATAAA 1481
consensus_10671#2      ------------------------------------------------------------
consensus_10671#1      ------------------------------------------------------------
                                                                                   

consensus_10671#0      TTAAATC 1488
consensus_10671#2      -------
consensus_10671#1      -------
                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)