These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10672#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 718 fasta sequence [TTTTGGGGTCCCCGACCCCAAGGAACAAACTTGAACCCCCACAGAGCAAGCCACAAAACAAAANAATCCCCAGGCAGCAGGAATNCTTCACGAGGCCTCGTGCCGAATCGGCACGAGGAGGAGTGCGAGAAGATGACCAAGAAGTTGAAGCAGCAGAGGCAGCAGCAGGGCCGGATCAGCGAGGAGGTGCCCGCCGGGGATGCGGCGGCGGCTTCGCGGGCGGGGGGAGTGGGGTTCTTGGGGCGGCGCGCGGCCGGGTGAGGACCAAAGGGTGGGCCGCCGCCTGATAGGGAGCCCCGCCCGCCCGCCCCAAGGGGGCCTCGCCCCAACCGGACGAATGGCCTTTCGTTCCTCCCCGCCTCCAAAGCTTCTTTTTTTTGATTTGCCGTGCCTTGCTGACATAGCCTCCCGAGAGATGCCCCTGTGGTTTCTCGGGGACACCGTGGCATTCTGTGTGTTTAAACTCTCCCGTGTGCCCTTTTATTTCCTCAGGCTTTTCTGGGNAAGGTAATTTCTNACCAATTCTGANGGGTTTTTTTCTCCACGCGATACACCAAAAACGTGCGTGGTTCGGCGGCTCATCCTCCCGTTGCTTTATATTNCGTCCCCTTACTCGATTTGCTTGTGTTCCCGGCTGNCTCNNNGNNTCGTAGGATACTCGGGTTNCTTTNCNCNCCATANGCCGGTTTATTNTTNCNACNCGCGCCTAGTNNTTANT] [+] EMBL CA753517 [TTTTGGGGTCCCCGACCCCAAGGAACAAACTTGAACCCCCACAGAGCAAGCCACAAAACAAAANAATCCCCAGGCAGCAGGAATNCTTCACGAGGCCTCGTGCCGAATCGGCACGAGGAGGAGTGCGAGAAGATGACCAAGAAGTTGAAGCAGCAGAGGCAGCAGCAGGGCCGGATCAGCGAGGAGGTGCCCGCCGGGGATGCGGCGGCGGCTTCGCGGGCGGGGGGAGTGGGGTTCTTGGGGCGGCGCGCGGCCGGGTGAGGACCAAAGGGTGGGCCGCCGCCTGATAGGGAGCCCCGCCCGCCCGCCCCAAGGGGGCCTCGCCCCAACCGGACGAATGGCCTTTCGTTCCTCCCCGCCTCCAAAGCTTCTTTTTTTTGATTTGCCGTGCCTTGCTGACATAGCCTCCCGAGAGATGCCCCTGTGGTTTCTCGGGGACACCGTGGCATTCTGTGTGTTTAAACTCTCCCGTGTGCCCTTTTATTTCCTCAGGCTTTTCTGGGNAAGGTAATTTCTNACCAATTCTGANGGGTTTTTTTCTCCACGCGATACACCAAAAACGTGCGTGGTTCGGCGGCTCATCCTCCCGTTGCTTTATATTNCGTCCCCTTACTCGATTTGCTTGTGTTCCCGGCTGNCTCNNNGNNTCGTAGGATACTCGGGTTNCTTTNCNCNCCATANGCCGGTTTATTNTTNCNACNCGCGCCTAGTNNTTANT] consensusID : consensus_10672#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 490 fasta sequence [CGAGCTCGTGCSAATTTCGGCAGAGGRAATTTTGAAGACAAGGTGAAAGTTTGAAAGGGGAGGAGCAGCAATGGCGGACATCGCGCTGCTGGTGGTGGAGGAGTTCGAGAAGATGACCAAGAAGTTGAAGCAGCAGAGGCAGCAGCAGGGCCGGATCAGCGAGGAGGTGCCCGCCGGGGATGCGGCGGCGGCTTCGCGGGCGGGGGAGTGGGGTTCTTGGGCGGCGGCGGCGGTGAGGACGAGGGTGGCGGCGCTGAAGGAGCCCGCCGCCGCGCAGGGGCTCGCCGCCGTCGATGGCTTCTTCTCCGCTTGATCTTT-CTTTGTTTCTTCTTCTTCTTCTTTTTTCCTTTGTTGGGAAGTGATTTGGTGAAGCAGGCCATATCCAATTTGGAGGATTTGATTTTGTTTTTTCTTTTCCTCTTTACCAGTATGTGATGTGTACATATATCGACTTTGTGAAGAAATCGCAACTTTTTCTCCAAAAAAAAAA] [+] EMBL BE229375 [CGAGCTCGTGCSAATTTCGGCAGAGGRAATTTTGAAGACAAGGTG AAGKTTGAAAGGGGAGGAGCAGCAATGGCGGACATCGCGCTGCTGGTGGTGGAGGAGTTCGAGAAGATGACCAAGAAGTTGAAGCAGCAGAGGCAGCAGCAGGGCCGGATCAGCGAGGAGGTGCCCGCCGGGGATGCGGCGGCGGCTTCGCGGGCGGGGGAGTDGGGTTCTTGGGCGGCGGCGGCGGTGAGGACGAGGGTVGCGGCGCTGAAGGAGCCC CCGCCGCGCAGGGKCTCGCCGCCGTCGATGGCTTCTTCTCCGCTTGATCTTT CTTTGTTTCTTC TC TCCTC TTTTTCCTTTGTTGGGAAGTGATTTGGTGAAGCA RRCATATCCAATTTGGAGGATTTGATTTT ] [+] EMBL AK120891 [ aAGAGAGAATTTTGAAGACAAGGTGAAAGTTTGAAAGGGGAGGAGCAGCAATGGCGGACATCGCGCTGCTGGTGGTGGAGGAGTTCGAGAAGATGACCAAGAAGTTGAAGCAGCAGAGGCAGCAGCAGGGCCGGATCAGCGAGGAGGTGCCCGCCGGGGATGCGGCGGCGGCTTCGCGGGCGGGGGAGTGGGGTTCTTGGGCGGCGGCGGCGGTGAGGACGAGGGTGGCGGCGCTGAAGGAGCCCGCCGCCGCGCAGGGGCTCGCCGCCGTCGATGGCTTCTTCTCCGCTTGATCTTT CTTTGTTTCTTCTTCTTCTTCTTTTTTCCTTTGTTGGGAAGTGATTTGGTGAAGCAGGCCATATCCAATTTGGAGGATTTGATTTTGTTTTTTCTTTTCCTCTTTACCAGTATGTGATGTGTACATATATCGACTTTGTGAAGAAATCGCAA ] [+] EMBL AU166006 [ AAGACAAGGTGAAAGTTTGAAAGGGGAGGAGCAGCAATGGCGGACATCGCGCTGCTGGTGGTGGAGGAGTTCGAGAAGATGACCAAGAAGTTGAAGCAGCAGAGGCAGCAGCAGGGCCGGATCAGCGAGGAGGTGCCCGCCGGGGATGCGGCGGCGGCTTCGCGGGCGGGGGAGTGGGGTTCTTGGGCGGCGGCGGCGGTNAGGACGAGGGTTGCGGCGCTTAAGGAACCCGCCGCCGCGCATGGGCTCGCCGCCGTCGATGGCTTCTTCTCCGCTTGATCTTTCCTTTGTTTCTT ] [+] EMBL CA755526 [ GAGGACGAGGGTGGCGGCGCTGAAGGAGCCCGCCGCCGCGCAGGGGCTCGCCGCCGTCGATGGCTTCTTCTCCGCTTGATCTTT CTTTGTTTCTTCTTCTTCTTCTTTTTTCCTTTGTTGGGAAGTGATTTGGTGAAGCAGGCCATATCCGATTTGGAGGATTTGATTTTGTTTTTTCTTTTCCTCTTTACCAGTATGTGATGTGTACATATATCGACTTTGTGAAGAAATCGCAACTTTTTCTCCAAAAAAAAAA] consensusID : consensus_10672#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 320 fasta sequence [TGAAGACAAGGTGAAAGTTTGAAAGGGGAGGAGCAGCAATGGCGGACATCGCGCTGCTGGTGGTGGAGGAGTTCGAGAAGATGNCCCAGAAAGTTNAGGCAGCAGAGNNAGCAGCAGGGCCGGATCAGCGAGGAGGTGCCCGCCGGGGATGCGGCGGCGGCTTCGCGGGCGGGGGAGTGGGGTTCTTGGGCGCCGGCGGCGGTGAGGACGAGGGTGGCGGCNTGAAGGACCCGCCGCCGCCAGGGGCTCGCCGCCGTCGATGNTTCTTCTCCGTTNATCTTCTTTGTTTCTCTCCTCCTCTTTTTCCTTTTTTGGAAGTA] [+] EMBL AU062618 [TGAAGACAAGGTGAAAGTTTGAAAGGGGAGGAGCAGCAATGGCGGACATCGCGCTGCTGGTGGTGGAGGAGTTCGAGAAGATGNCCCAGAAAGTTNAGGCAGCAGAGNNAGCAGCAGGGCCGGATCAGCGAGGAGGTGCCCGCCGGGGATGCGGCGGCGGCTTCGCGGGCGGGGGAGTGGGGTTCTTGGGCGCCGGCGGCGGTGAGGACGAGGGTGGCGGCNTGAAGGACCCGCCGCCGCCAGGGGCTCGCCGCCGTCGATGNTTCTTCTCCGTTNATCTTCTTTGTTTCTCTCCTCCTCTTTTTCCTTTTTTGGAAGTA] consensusID : consensus_10672#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 256 fasta sequence [CGCCNCCGTCGATGGCTTNTTTCTCCGCTTGATCTTTCTTTGTTTCTTCTTCTTCTTCTTTTTTCCTTTGTTGGGAAGTGATTTGGTGAAGCAGGCCATATCCAATTTGGAGNAAAAAAATTTTGTTTTTTCTTTTCCTCTTTCCCAGTATGTGNTGTGTACATATATCGACTTTGTGAAGAANTCGCACNTTTTTTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU172778 [CGCCNCCGTCGATGGCTTNTTTCTCCGCTTGATCTTTCTTTGTTTCTTCTTCTTCTTCTTTTTTCCTTTGTTGGGAAGTGATTTGGTGAAGCAGGCCATATCCAATTTGGAGNAAAAAAATTTTGTTTTTTCTTTTCCTCTTTCCCAGTATGTGNTGTGTACATATATCGACTTTGTGAAGAANTCGCACNTTTTTTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_10672#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 173 fasta sequence [GCGATTTCTTCACAAAGTCGATATATGTACACATCACATACTGGTAAAGAGGAAAAGAAAAAACAAAATCAAATCCTCCAAATTGGATATGGCCTGCTTCACCAAATCACTTCCCAACAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU175209 [GCGATTTCTTCACAAAGTCGATATATGTACACATCACATACTGGTAAAGAGGAAAAGAAAAAACAAAATCAAATCCTCCAAATTGGATATGGCCTGCTTCACCAAATCACTTCCCAACAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10672#1 ---------------------CGAGCTCGTGCSAATTTCGGCAGAGGRAATTTTGAAGAC 39 consensus_10672#2 -----------------------------------------------------TGAAGAC 7 consensus_10672#0 TTTTGGGGTCCCCGACCCCAAGGAACAAACTTGAACCCCCACAGAGCAAGCCAC-AAAAC 59 consensus_10672#3 ------------------------------------------------------------ consensus_10672#4 ------------------------------------------------------------ consensus_10672#1 AAGGTGAAAGTTTGAAAGGGGAGGAGCAGCAATGGCGGACATCGCGCTGCTGGTGGTGGA 99 consensus_10672#2 AAGGTGAAAGTTTGAAAGGGGAGGAGCAGCAATGGCGGACATCGCGCTGCTGGTGGTGGA 67 consensus_10672#0 AAAANAATCCCCAGGCAGCAGGAATNCTTCACGAGGCCTCGTGCCGAATCGGCACGAGGA 119 consensus_10672#3 ------------------------------------------------------------ consensus_10672#4 -------------------------------------------GCGATTTCTTCACAAAG 17 consensus_10672#1 GGAGTTCGAGAAGATGACCAAGAA-GTTGAAGCAGCAGAGGCAGCAGCAGGGCCGGATCA 158 consensus_10672#2 GGAGTTCGAGAAGATGNCCCAGAAAGTTNAGGCAGCAGAGNNAGCAGCAGGGCCGGATCA 127 consensus_10672#0 GGAGTGCGAGAAGATGACCAAGAA-GTTGAAGCAGCAGAGGCAGCAGCAGGGCCGGATCA 178 consensus_10672#3 ------------------------------------------------------------ consensus_10672#4 TCGATATATGTACACATCACATACTGGTAAAG-AGGAAAAGAAAAAACAAAATCAAATCC 76 consensus_10672#1 GCGAGGAGGTGCCCGCCGGGGATGCGGCGGCGGCTTCGCGGGCGGGGG-AGTGGGGTTCT 217 consensus_10672#2 GCGAGGAGGTGCCCGCCGGGGATGCGGCGGCGGCTTCGCGGGCGGGGG-AGTGGGGTTCT 186 consensus_10672#0 GCGAGGAGGTGCCCGCCGGGGATGCGGCGGCGGCTTCGCGGGCGGGGGGAGTGGGGTTCT 238 consensus_10672#3 ------------------------------------------------------------ consensus_10672#4 TCCAAATTGGATATGGCCTGCTTCACCAAATCACTTCCCAACAAAGGAAAAAAAAAAAAA 136 consensus_10672#1 TGGG-CGGCG-GCGGC--GGTGAGGAC--GAGGGTGG--CGGCGC----TGAAGGAGCCC 265 consensus_10672#2 TGGG-CGCCG-GCGGC--GGTGAGGAC--GAGGGTGG--CGGCN-----TGAAGGA-CCC 232 consensus_10672#0 TGGGGCGGCGCGCGGCCGGGTGAGGACCAAAGGGTGGGCCGCCGCCTGATAGGGAGCCCC 298 consensus_10672#3 ------------------------------------------------------------ consensus_10672#4 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------------- 173 consensus_10672#1 GCC-----GCCGCGCAGGGGC-TCGCCGCCGTCG-----ATGGC-TTCTTCTCCGCTTGA 313 consensus_10672#2 GCC-----GCCGC-CAGGGGC-TCGCCGCCGTCG-----ATGN--TTCTTCTCCG-TTNA 277 consensus_10672#0 GCCCGCCCGCCCCAAGGGGGCCTCGCCCCAACCGGACGAATGGC-CTTTCGTTCCTCCCC 357 consensus_10672#3 -----------------------CGCCNCCGTCG-----ATGGCTTNTTTCTCCGCTTGA 32 consensus_10672#4 ------------------------------------------------------------ consensus_10672#1 TCTTTCTTTGTTTCTTCTTCTTCTTCTTTTTTCCTTTGTTGGGAAGTGATTTGGTGAAGC 373 consensus_10672#2 TCTT-CTTTGTTTCT----CTCCTCCTCTTTTTCCTTTTTTGGAAGTA------------ 320 consensus_10672#0 GCCTCCAAAGCTTCTTTTTTTTGATTTGCCGTGCCTTGCT-GACATAGCCTCCCGAGAGA 416 consensus_10672#3 TCTTTCTTTGTTTCTTCTTCTTCTTCTTTTTTCCTTTGTTGGGAAGTGATTTGGTGAAGC 92 consensus_10672#4 ------------------------------------------------------------ consensus_10672#1 AGGCCATATCCAATTTGGAGGATTTGA-TTTTGTTTTTTCTTTTCCTCTTTACCAGTATG 432 consensus_10672#2 ------------------------------------------------------------ consensus_10672#0 TGCCCCTGTGGTTTCTCGGGGACACCG-TGGCATTCTGTGTGTTTAAACTCTCCCGTGTG 475 consensus_10672#3 AGGCCATATCCAATTTGGAGNAAAAAAATTTTGTTTTTTCTTTTCCTCTTTCCCAGTATG 152 consensus_10672#4 ------------------------------------------------------------ consensus_10672#1 TGATGTGTACATATATCGACTTTGTGAAGAAATCGCAACTTTTTCTCCAAAAAAAAAA-- 490 consensus_10672#2 ------------------------------------------------------------ consensus_10672#0 CCCTTTTATTTCCTCAGGCTTTTCTGGGNAAGGTAATTTCTNACCAATTCTGANGGGTTT 535 consensus_10672#3 TGNTGTGTACATATATCGACTTTGTGAAGAANTCGCACNTTTTTTTCCCAAAAAAAAAAA 212 consensus_10672#4 ------------------------------------------------------------ consensus_10672#1 ------------------------------------------------------------ consensus_10672#2 ------------------------------------------------------------ consensus_10672#0 TTTTCTCCACGCGATACACCAAAAACGTGCGTGGTTCGGCGGCTCATCCTCCCGTTGCTT 595 consensus_10672#3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---------------- 256 consensus_10672#4 ------------------------------------------------------------ consensus_10672#1 ------------------------------------------------------------ consensus_10672#2 ------------------------------------------------------------ consensus_10672#0 TATATTNCGTCCCCTTACTCGATTTGCTTGTGTTCCCGGCTGNCTCNNNGNNTCGTAGGA 655 consensus_10672#3 ------------------------------------------------------------ consensus_10672#4 ------------------------------------------------------------ consensus_10672#1 ------------------------------------------------------------ consensus_10672#2 ------------------------------------------------------------ consensus_10672#0 TACTCGGGTTNCTTTNCNCNCCATANGCCGGTTTATTNTTNCNACNCGCGCCTAGTNNTT 715 consensus_10672#3 ------------------------------------------------------------ consensus_10672#4 ------------------------------------------------------------ consensus_10672#1 --- consensus_10672#2 --- consensus_10672#0 ANT 718 consensus_10672#3 --- consensus_10672#4 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||