These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10678#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 728 fasta sequence [TCACCCAGTCGCCCGACCGGCCTCCTCTCCTGGCCACGGCGACGCCTCCTCCCCCGGCCACGCCGCGAATACCTTGGGTCTCTGCAATAGTCCAATACCGATCTGCGGCAGCTACTCTGCTCGTGGAGGAGAGCCGCCGCCGGAAGCCGGAAGGCCGGGTAGCGCCATGTCGGCGCTATTCAACTTCAATTCGTTCCTGACCGTGGTGCTGCTGGTGATCTGCACCTGTACCTACATCAAGATCCAGTTCCCCGCCATCCTCAACGACCGCACCGGATTCCGTGGTTTCTTTTGGAAAGCAGCCAGAATAGGTGAACGCTTAAGCCCGTGGGTAGCTCTTGGGTGCTTTGCCATGGGGATATCCACTATTTTCTTCTGAGGCCTTCAT-GATTTTAATCCAGGCTGCAGAAGATTTGTAGGAAGAACAGTGTGATTATTATTGCATTGTTTTTTGTGTTTTTGGAGGAGCTTTTGTTTCAATTTTAGCTGGGATGTGGAGATACGAGTCTGGCAAGTGCCAGTTGTTACTCTCAGGGTGGTGCCCTTGTCAGGAAAGAAGTGATACTATGGTTGCA-CCATTTAATGGTTATGTTGTGTATTGAACTGTTTATGTGCACATGGCATGTTCAGAAAATGCTTAAATGCTCCTAACAGGATATTGCTATTTCTCAGATTCTGCTTAATGCTATATGGATGCGCAGGTTTGATGCACTGTCAGCATAAAAAAA] [+] EMBL CF301957 [TCACCCAGTCGCCCGACCGGCCTCCTCTCCTGGCCACGGCGACGCCTCCTCCCCCGGCCACGCCGCGAATACCTTGGGTCTCTGCAATAGTCCAATACCGATCTGCGGCAGCTACTCTGCTCGTGGAGGAGAGCCGCCGCCGGAAGCCGGAAGGCCGGGTAGCGCCATGTCGGCGCTATTCAACTTCAATTCGTTCCTGACCGTGGTGCTGCTGGTGATCTGCACCTGTACCTACATCAAGATCCAGTTCCCCGCCATCCTCAACGACCGCACCGGATTCCGTGGTTTCTTTTGGAAAGCAGCCAGAATAGGTGAACGCTTAAGCCCGTGGGTAGCTCTTGGGTGCTTTGCCATGGGGATATCCACTATTTTCTTCTGAGGCCTTCAT GATTTTAATCCAGGCTGCAGAAGATTTGTAGGAAGAACAGTGTGATTA ] [+] EMBL AK058649 [ AGTCGCCCGACCGGCCTCCTCTCCTGGCCACGGCGACGCCTCCTCCCCCGGCCACGCCGCGAATACCTTGGGTCTCTGCAATAGTCCAATACCGATCTGCGGCAGCTACTCTGCTCGTGGAGGAGAGCCGCCGCCGGAAGCCGGAAGGCCGGGTAGCGCCATGTCGGCGCTATTCAACTTCAATTCGTTCCTGACCGTGGTGCTGCTGGTGATCTGCACCTGTACCTACATCAAGATCCAGTTCCCCGCCATCCTCAACGACCGCACCGGATTCCGTGGTTTCTTTTGGAAAGCAGCCAGAATAGGTGAACGCTTAAGCCCGTGGGTAGCTCTTGGGTGCTTTGCCATGGGGATATCCACTATTTTCTTCTGAGGCCTTCAT GATTTTAATCCAGGCTGCAGAAGATTTGTAGGAAGAACAGTGTGATTATTATTGCATTGTTTTTTGTGTTTTTGGAGGAGCTTTTGTTTCAATTTTAGCTGGGATGTGGAGATACGAGTCTGGCAAGTGCCAGTTGTTACTCTCAGGGTGGTGCCCTTGTCAGGAAAGAAGTGATACTATGGTTGCA CCATTTAATGGTTATGTTGTGTATTGAACTGTTTATGTGCACATGGCATGTTCAGAAAAT ] [+] EMBL CF295130 [ GCCCGACCGGCCTCCTCTCCTGGCCACGGCGACGCCTCCTCCCCCGGCCACGCCGCGAATACCTTGGGTCTCTGCAATAGTCCAATACCGATCTGCGGCATCTACTCTGCTCGTGGAGGAGAGCCGCCGCCGGAAGCCGGAAGGCCGGGTAGCGCCATGTCGGCGCTATTCAACTTCAATTCGTTCCTGACCGTGGTGCTGCTGGTGATCTGCACCTGTACCTACATCAAGATCCAGTTCCCCGCCATCCTCAACGACCGCACCGGATTCCGTGGTTTCTTTTGGAAAGCAGCCAGAATAGGTGAACGCTTAAGCCCGTGGGTAGCTCTTGGGTACTTTGCCATGGGGATATCCACTATTTTCTTCTGAGGCCTTCAT GATTTTAATCCAGGCTGCAGAAGATTTGTAGGAAGAACTGTGTGATTATTATTGCATTGTTTTTTGTGTTTT ] [+] EMBL AU058249 [ GACGCCTCCTCCCCCGGCCACGCCGCGAATACCTTGGGTCTCTGCAATAGTCCAATACCGATCTGCGGCAGCTACTCTGCTCGTGGAGGAGAGCCGCCGCCGGAAGCCGGAAGGCCGGGTAGCGCCATGTCGGCGCTATTCAACTTCAATTCGTTCCTGACCGTGGTGCTGCTGGTGATCTGCACCTGTACCTACATCAAGATCCAGTTCCCCGCCATCCTCAACGACCGCACCGGATTCCGTGGTTTCTTTTGGAAAGCAGCCAGAATAGGTGAACGCTTAAGCCCGTGGGTAGCTCTTGGGTGCTTTGCCATGGGGATATCCACTATTTTCTTCTGAGGCCTTCATGGATTTTAATCCAGGCTGCAGAAGATTTGTAGGAAGAACAGTGTGATTATTATTGCATTGTTTTTTGTGTTTTTGGAGGAGCTTTTGTTTCAA ] [+] EMBL CA753424 [ CTCCCCCGGCCACGCCGCGAATACCTTGGGTCTCTGCAATAGTCCAATACCGATCTGCGGCAGCTACTCTGCTCGTGGAGGAGAGCCGCCGCCGGAAGCCGGAAGGCCGGGTAGCGCCATGTCGGCGCTATTCAACTTCAATTCGTTCCTGACCGTGGTGCTGCTGGTGATCTGCACCTGTACCTACATCAAGATCCAGTTCCCCGCCATCCTCAACGACCGCACCGGATTCCGTGGTTTCTTTTGGAAAGCAGCCAGAATAGGTGAACGCTTAAGCCCGTGGGTAGCTCTTGGGTGCTTTGCCATGGGGATATCCACTATTTTCTTCTGAGGCCTTCAT GATTTTAATCCAGGCTGCAGAAGATTTGTAGGAAGAACAGTGTGATTATGATTGCATGGTATTTTGTGTTTTTGGAGGAGCTGTGGTTTC ATTTTAGCTGGGATGTGGAGATACGAGTCTGGCCAGTGCCAGTGGTTACTCTCAGGGTGCTGCCCTTGTCCTGACAGAAGTGATACTATGG TGCACCCATTTATTGGTTATGGTGTGTATTGAACTGTCTATGTCCACATGGCt ] [-] EMBL CF295131 [ CGGGTAGCGCCATGTCGGCGCTATTCAACTTCAATTCGTTCCTGACCGTGGTGCTGCTGGTGATCTGCACCTGTACCTACATCAAGATCCAGTTCCCCGCCATCCTCAACGACCGCACCGGATTCCGTGGTTTCTTTTGGAAAGCAGCCAGAATAGGTGAACGCTTAAGCCCGTGGGTAGCTCTTGGGTACTTTGCCATGGGGATATCCACTATTTTCTTCTGAGGCCTTCAT GATTTTAATCCAGGCTGCAGAAGATTTGTAGGAAGAACTGTGTGATTATTATTGCATTGTTTTTTGTGTTTTTGGAGGAGCTTTTGTTTCAATTTTAGCTGGGATGTGGAGATACGAGTCTGGCAAGTGCCAGTTGTTACTCTCAGGGTGGTGCCCTTGTCAGGAAAGAAGTGATACTATGGTTGCA CCATTTAATGGTTATGTTGTGTATTGAACTGTTTATGTGCACATGGCATGTTCAGAAAATGCTTAAATGCTCCTAACAGGATATTGCTATTTCTCAGATTCTGCTTAATGCTATATGGATGCGCAGGTTTGATGCACTGTCAGCATAAAAAAA] [+] EMBL AU101471 [ CCTCAACGACCGCACCGGATTCCGTGGTTTCTTTTGGAAAGCAGCCAGAATAGGTGAACGCTTAAGCCCGTGGGTAGCTCTTGGGTGCTTTGCCATGGGGATATCCACTATTTTCTTCTGAGGCCTTCAT GATTTTAATCCAGGCTGCAGAAGATTTGTAGGAAGAACAGTGTGATTATTATTGCATTGTTTTTTGTGTTTTTGGAGGAGCTTTTGTTTCAATTTTAGCTGGGATGTGGAGATACGAGTCTGGCAAGTGCCAGTTGTTACTCTCAGGGTGGTGCCCTTGTCAGGAAAGAAGTGATACTAT GTTGCA CCATTTAAaaaaaa ] consensusID : consensus_10678#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 392 fasta sequence [ACCCGGGGACCCCGGGGCTTGCCAGGGTAACCACATTCCTCGAGGCCTCATGATTTAACCAGGCGCAGAAGAATTGTAGGAAGAACAGTGTGATAATAATGCAATGGATTTTGTGTTTTTGGAGGAGCTTTTGTTTCAATTTTAGCTGGGATGTGGAGATACGAGTCTGGCAAGTGCCAGTTGTTACTCTCAGGGTGGTGCCCTTGTCAGGAAAGAAGTGATACTATGGTGCACCATTTAATGGTTATGTTGTGTATTGAACTGTTTATGTGCACATGGCATGTTCAGAAAATGCTTAAATGCTCCTAACAGGATATTGCTATTTCTCAGATTCTGCTTAATGCTATATGGATGCGCAGGTTTGCTGCACTGTCAGCATAATTGAGCAGTTA] [-] EMBL OS31698 [ACCCGGGGACCCCGGGGCTTGCCAGGGTAACCACATTCCTCGAGGCCTCATGATTTAACCAGGCGCAGAAGAATTGTAGGAAGAACAGTGTGATAATAATGCAATGGATTTTGTGTTTTTGGAGGAGCTTTTGTTTCAATTTTAGCTGGGATGTGGAGATACGAGTCTGGCAAGTGCCAGTTGTTACTCTCAGGGTGGTGCCCTTGTCAGGAAAGAAGTGATACTATGGTGCACCATTTAATGGTTATGTTGTGTATTGAACTGTTTATGTGCACATGGCATGTTCAGAAAATGCTTAAATGCTCCTAACAGGATATTGCTATTTCTCAGATTCTGCTTAATGCTATATGGATGCGCAGGTTTGCTGCACTGTCAGCATAATTGAGCAGTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10678#0 TCACCCAGTCGCCCGACCGGCCTCCTCTCCTGGCCACGGCGACGCCTCCTCCCCCGGCCA 60 consensus_10678#1 ------------------------------------------------------------ consensus_10678#0 CGCCGCGAATACCTTGGGTCTCTGCAATAGTCCAATACCGATCTGCGGCAGCTACTCTGC 120 consensus_10678#1 ------------------------------------------------------------ consensus_10678#0 TCGTGGAGGAGAGCCGCCGCCGGAAGCCGGAAGGCCGGGTAGCGCCATGTCGGCGCTATT 180 consensus_10678#1 ------------------------------------------------------------ consensus_10678#0 CAACTTCAATTCGTTCCTGACCGTGGTGCTGCTGGTGATCTGCACCTGTACCTACATCAA 240 consensus_10678#1 ------------------------------------------------------------ consensus_10678#0 GATCCAGTTCCCCGCCATCCTCAACGACCGCACCGGATTCCGTGGTTTCTTTTGGAAAGC 300 consensus_10678#1 ------------------------------------------------------------ consensus_10678#0 AGCCAGAATAGGTGAACGCTTAAGCCCGTGGGTAGCTCTTGGGTGCTTTGCCATGGGGAT 360 consensus_10678#1 -----------------------ACCCGGGGA---CCCCGGGG---CTTGCCA---GGGT 28 **** ** * * *** ****** ** * consensus_10678#0 ATCCACTATTTTCTTCTGAGGCCTTCATGATTTTAATCCAGGCTGCAGAAGATTTGTAGG 420 consensus_10678#1 AACCACATTCCTC----GAGGCCT-CATGATTTAA--CCAGGC-GCAGAAGAATTGTAGG 80 * **** * ** ******* ******** * ****** ******** ******* consensus_10678#0 AAGAACAGTGTGATTATTATTGCATTGTTTTTTGTGTTTTTGGAGGAGCTTTTGTTTCAA 480 consensus_10678#1 AAGAACAGTGTGATAATAAT-GCAATGGATTTTGTGTTTTTGGAGGAGCTTTTGTTTCAA 139 ************** ** ** *** ** ******************************* consensus_10678#0 TTTTAGCTGGGATGTGGAGATACGAGTCTGGCAAGTGCCAGTTGTTACTCTCAGGGTGGT 540 consensus_10678#1 TTTTAGCTGGGATGTGGAGATACGAGTCTGGCAAGTGCCAGTTGTTACTCTCAGGGTGGT 199 ************************************************************ consensus_10678#0 GCCCTTGTCAGGAAAGAAGTGATACTATGGTTGCACCATTTAATGGTTATGTTGTGTATT 600 consensus_10678#1 GCCCTTGTCAGGAAAGAAGTGATACTATGGT-GCACCATTTAATGGTTATGTTGTGTATT 258 ******************************* **************************** consensus_10678#0 GAACTGTTTATGTGCACATGGCATGTTCAGAAAATGCTTAAATGCTCCTAACAGGATATT 660 consensus_10678#1 GAACTGTTTATGTGCACATGGCATGTTCAGAAAATGCTTAAATGCTCCTAACAGGATATT 318 ************************************************************ consensus_10678#0 GCTATTTCTCAGATTCTGCTTAATGCTATATGGATGCGCAGGTTTGATGCACTGTCAGCA 720 consensus_10678#1 GCTATTTCTCAGATTCTGCTTAATGCTATATGGATGCGCAGGTTTGCTGCACTGTCAGCA 378 ********************************************** ************* consensus_10678#0 TAAAAAAA------ 728 consensus_10678#1 TAATTGAGCAGTTA 392 *** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||