These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1068#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 435 fasta sequence [ACCCAGTCATGCAGCAGCAGTGTTGCCACACAGCTCAGGCTGGTAGCCCCACCATCTCACTACCTCAGCGCCCATTAGTATTGTTCAAGCGGATTGTGGCCAACAAGCGTACAAACTGCCACGCCAATTTAGTGGTGGTCTTACTTTGATCCAGACTCAAGCGTCAAGCCCCAAACTCTTGTTGACCCTTCCAACATTGCCCATCCACTATGTGGTATCTACCCTAACTACTATAGTGCTCCCCACGGAGCACTTGCCCCTGTTGGTGGTGTTCTGGTACTGAATTGTAACCATATAATAGTTCGTATGTTAAAAATAAAGTCAAACATCATCATGTGTGACTGTTGAAACTTAGGGTCATATAAATCTAAATAAAATCATTTTACCTATTTAAATAGCCTTCCTTTATGAGGATAAATCCTATTAAAAAAAAAA] [+] EMBL BI804742 [ACCCAGTCATGCAGCAGCAGTGTTGCCACACAGCTCAGGCTGGTAGCCCCACCATCTCACTACCTCAGCGCCCATTAGTATTGTTCAAGCGGATTGTGGCCAACAAGCGTACAAACTGCCACGCCAATTTAGTGGTGGTCTTACTTTGATCCAGACTCAAGCGTCAAGCCCCAAACTCTTGTTGACCCTTCCAACATTGCCCATCCACTATGTGGTATCTACCCTAACTACTATAGTGCTCCCCACGGAGCACTTGCCCCTGTTGGTGGTGTTCTGGTACTGAATTGTAACCATATAATAGTTCGTATGTTAAAAATAAAGTCAAACATCATCATGTGTGACTGTTGAAACTTAGGGTCATATAAATCTAAATAAAATCATTTTACCTATTTAAATAGCCTTCCTTTATGAGGATAAATCCTATTAAAAAAAAAA] consensusID : consensus_1068#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 356 fasta sequence [ACCAGCGCCCATTTAGTGATTGGTGTGCAAGCGATTGTGCGCCAACAAGCTGACAAACTGCGCACGCCAATTGTGAGTGGGTGTCTGACTTGTGATGCCAGACTCCAAGCTGCAAGCCCCAAACTCTGGTTGGCACCTGTGCAACTGTGCGCCATCCACTATGTGGTATCTACCCTAACTACTATAGTGCTCCCACGGAGCACTTGCCACCTGTTGGTGGTGTCTGGTAACTGAATTGTAACCCATATAACTAGTTCGTATGTTAAAAATAAAGTCATACATCATCATGTGTGACCTGTTGAAACTTAGGGTCATATAAATCTAAATAAAATCATCTTACCTATTTAAAAAAAAAA] [+] EMBL BI803109 [ACCAGCGCCCATTTAGTGATTGGTGTGCAAGCGATTGTGCGCCAACAAGCTGACAAACTGCGCACGCCAATTGTGAGTGGGTGTCTGACTTGTGATGCCAGACTCCAAGCTGCAAGCCCCAAACTCTGGTTGGCACCTGTGCAACTGTGCGCCATCCACTATGTGGTATCTACCCTAACTACTATAGTGCTCCCACGGAGCACTTGCCACCTGTTGGTGGTGTCTGGTAACTGAATTGTAACCCATATAACTAGTTCGTATGTTAAAAATAAAGTCATACATCATCATGTGTGACCTGTTGAAACTTAGGGTCATATAAATCTAAATAAAATCATCTTACCTATTTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1068#0 ACCCAGTCATGCAGCAGCAGTGTTGCCACACAGCTCAGGCTGGTAGCCCCACCATCTCAC 60 consensus_1068#1 ------------------------------------------------------------ consensus_1068#0 TACCTCAGCGCCCATT-----AGTATTGTTCAAGCGGATTGTG-GCCAACAAGCGTACAA 114 consensus_1068#1 ---ACCAGCGCCCATTTAGTGATTGGTGTGCAAGCG-ATTGTGCGCCAACAAGCTGACAA 56 *********** * * *** ****** ****** ********** **** consensus_1068#0 ACTGC-CACGCCAATTT--AGTGGTGGTCTTACTT-TGAT-CCAGACTC-AAGCGTCAAG 168 consensus_1068#1 ACTGCGCACGCCAATTGTGAGTGGGTGTCTGACTTGTGATGCCAGACTCCAAGCTGCAAG 116 ***** ********** ***** **** **** **** ******** **** **** consensus_1068#0 CCCCAAACTCTTGTTG--ACCCTTCCAACATTGC-CCATCCACTATGTGGTATCTACCCT 225 consensus_1068#1 CCCCAAACTCTGGTTGGCACCTGTGCAACTGTGCGCCATCCACTATGTGGTATCTACCCT 176 *********** **** *** * **** *** ************************* consensus_1068#0 AACTACTATAGTGCTCCCCACGGAGCACTTGCC-CCTGTTGGTGGTGTTCTGGTACTGAA 284 consensus_1068#1 AACTACTATAGTGCTCCC-ACGGAGCACTTGCCACCTGTTGGTGGTGTCTGGTAACTGAA 235 ****************** ************** ************** * ****** consensus_1068#0 TTGTAACC-ATATAA-TAGTTCGTATGTTAAAAATAAAGTCAAACATCATCATGTGTGAC 342 consensus_1068#1 TTGTAACCCATATAACTAGTTCGTATGTTAAAAATAAAGTCATACATCATCATGTGTGAC 295 ******** ****** ************************** ***************** consensus_1068#0 -TGTTGAAACTTAGGGTCATATAAATCTAAATAAAATCATTTTACCTATTTAAATAGCCT 401 consensus_1068#1 CTGTTGAAACTTAGGGTCATATAAATCTAAATAAAATCATCTTACCTATTTAAAAAAAAA 355 *************************************** ************* * consensus_1068#0 TCCTTTATGAGGATAAATCCTATTAAAAAAAAAA 435 consensus_1068#1 A--------------------------------- 356 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||