cluster # 1068

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1068 cluster # 1068 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1068#0 length = 435 sequences # 1

consensus_1068#1 length = 356 sequences # 1

consensusID : consensus_1068#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 435
fasta sequence

                              [ACCCAGTCATGCAGCAGCAGTGTTGCCACACAGCTCAGGCTGGTAGCCCCACCATCTCACTACCTCAGCGCCCATTAGTATTGTTCAAGCGGATTGTGGCCAACAAGCGTACAAACTGCCACGCCAATTTAGTGGTGGTCTTACTTTGATCCAGACTCAAGCGTCAAGCCCCAAACTCTTGTTGACCCTTCCAACATTGCCCATCCACTATGTGGTATCTACCCTAACTACTATAGTGCTCCCCACGGAGCACTTGCCCCTGTTGGTGGTGTTCTGGTACTGAATTGTAACCATATAATAGTTCGTATGTTAAAAATAAAGTCAAACATCATCATGTGTGACTGTTGAAACTTAGGGTCATATAAATCTAAATAAAATCATTTTACCTATTTAAATAGCCTTCCTTTATGAGGATAAATCCTATTAAAAAAAAAA]

[+] EMBL BI804742             [ACCCAGTCATGCAGCAGCAGTGTTGCCACACAGCTCAGGCTGGTAGCCCCACCATCTCACTACCTCAGCGCCCATTAGTATTGTTCAAGCGGATTGTGGCCAACAAGCGTACAAACTGCCACGCCAATTTAGTGGTGGTCTTACTTTGATCCAGACTCAAGCGTCAAGCCCCAAACTCTTGTTGACCCTTCCAACATTGCCCATCCACTATGTGGTATCTACCCTAACTACTATAGTGCTCCCCACGGAGCACTTGCCCCTGTTGGTGGTGTTCTGGTACTGAATTGTAACCATATAATAGTTCGTATGTTAAAAATAAAGTCAAACATCATCATGTGTGACTGTTGAAACTTAGGGTCATATAAATCTAAATAAAATCATTTTACCTATTTAAATAGCCTTCCTTTATGAGGATAAATCCTATTAAAAAAAAAA]




>consensus_1068#0
ACCCAGTCATGCAGCAGCAGTGTTGCCACACAGCTCAGGCTGGTAGCCCCACCATCTCAC
TACCTCAGCGCCCATTAGTATTGTTCAAGCGGATTGTGGCCAACAAGCGTACAAACTGCC
ACGCCAATTTAGTGGTGGTCTTACTTTGATCCAGACTCAAGCGTCAAGCCCCAAACTCTT
GTTGACCCTTCCAACATTGCCCATCCACTATGTGGTATCTACCCTAACTACTATAGTGCT
CCCCACGGAGCACTTGCCCCTGTTGGTGGTGTTCTGGTACTGAATTGTAACCATATAATA
GTTCGTATGTTAAAAATAAAGTCAAACATCATCATGTGTGACTGTTGAAACTTAGGGTCA
TATAAATCTAAATAAAATCATTTTACCTATTTAAATAGCCTTCCTTTATGAGGATAAATC
CTATTAAAAAAAAAA

consensusID : consensus_1068#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 356
fasta sequence

                              [ACCAGCGCCCATTTAGTGATTGGTGTGCAAGCGATTGTGCGCCAACAAGCTGACAAACTGCGCACGCCAATTGTGAGTGGGTGTCTGACTTGTGATGCCAGACTCCAAGCTGCAAGCCCCAAACTCTGGTTGGCACCTGTGCAACTGTGCGCCATCCACTATGTGGTATCTACCCTAACTACTATAGTGCTCCCACGGAGCACTTGCCACCTGTTGGTGGTGTCTGGTAACTGAATTGTAACCCATATAACTAGTTCGTATGTTAAAAATAAAGTCATACATCATCATGTGTGACCTGTTGAAACTTAGGGTCATATAAATCTAAATAAAATCATCTTACCTATTTAAAAAAAAAA]

[+] EMBL BI803109             [ACCAGCGCCCATTTAGTGATTGGTGTGCAAGCGATTGTGCGCCAACAAGCTGACAAACTGCGCACGCCAATTGTGAGTGGGTGTCTGACTTGTGATGCCAGACTCCAAGCTGCAAGCCCCAAACTCTGGTTGGCACCTGTGCAACTGTGCGCCATCCACTATGTGGTATCTACCCTAACTACTATAGTGCTCCCACGGAGCACTTGCCACCTGTTGGTGGTGTCTGGTAACTGAATTGTAACCCATATAACTAGTTCGTATGTTAAAAATAAAGTCATACATCATCATGTGTGACCTGTTGAAACTTAGGGTCATATAAATCTAAATAAAATCATCTTACCTATTTAAAAAAAAAA]




>consensus_1068#1
ACCAGCGCCCATTTAGTGATTGGTGTGCAAGCGATTGTGCGCCAACAAGCTGACAAACTG
CGCACGCCAATTGTGAGTGGGTGTCTGACTTGTGATGCCAGACTCCAAGCTGCAAGCCCC
AAACTCTGGTTGGCACCTGTGCAACTGTGCGCCATCCACTATGTGGTATCTACCCTAACT
ACTATAGTGCTCCCACGGAGCACTTGCCACCTGTTGGTGGTGTCTGGTAACTGAATTGTA
ACCCATATAACTAGTTCGTATGTTAAAAATAAAGTCATACATCATCATGTGTGACCTGTT
GAAACTTAGGGTCATATAAATCTAAATAAAATCATCTTACCTATTTAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1068#0      ACCCAGTCATGCAGCAGCAGTGTTGCCACACAGCTCAGGCTGGTAGCCCCACCATCTCAC 60
consensus_1068#1      ------------------------------------------------------------
                                                                                  

consensus_1068#0      TACCTCAGCGCCCATT-----AGTATTGTTCAAGCGGATTGTG-GCCAACAAGCGTACAA 114
consensus_1068#1      ---ACCAGCGCCCATTTAGTGATTGGTGTGCAAGCG-ATTGTGCGCCAACAAGCTGACAA 56
                           ***********     * *  *** ****** ****** **********  ****

consensus_1068#0      ACTGC-CACGCCAATTT--AGTGGTGGTCTTACTT-TGAT-CCAGACTC-AAGCGTCAAG 168
consensus_1068#1      ACTGCGCACGCCAATTGTGAGTGGGTGTCTGACTTGTGATGCCAGACTCCAAGCTGCAAG 116
                      ***** **********   *****  **** **** **** ******** ****  ****

consensus_1068#0      CCCCAAACTCTTGTTG--ACCCTTCCAACATTGC-CCATCCACTATGTGGTATCTACCCT 225
consensus_1068#1      CCCCAAACTCTGGTTGGCACCTGTGCAACTGTGCGCCATCCACTATGTGGTATCTACCCT 176
                      *********** ****  ***  * ****  *** *************************

consensus_1068#0      AACTACTATAGTGCTCCCCACGGAGCACTTGCC-CCTGTTGGTGGTGTTCTGGTACTGAA 284
consensus_1068#1      AACTACTATAGTGCTCCC-ACGGAGCACTTGCCACCTGTTGGTGGTGTCTGGTAACTGAA 235
                      ****************** ************** **************   *  ******

consensus_1068#0      TTGTAACC-ATATAA-TAGTTCGTATGTTAAAAATAAAGTCAAACATCATCATGTGTGAC 342
consensus_1068#1      TTGTAACCCATATAACTAGTTCGTATGTTAAAAATAAAGTCATACATCATCATGTGTGAC 295
                      ******** ****** ************************** *****************

consensus_1068#0      -TGTTGAAACTTAGGGTCATATAAATCTAAATAAAATCATTTTACCTATTTAAATAGCCT 401
consensus_1068#1      CTGTTGAAACTTAGGGTCATATAAATCTAAATAAAATCATCTTACCTATTTAAAAAAAAA 355
                       *************************************** ************* *    

consensus_1068#0      TCCTTTATGAGGATAAATCCTATTAAAAAAAAAA 435
consensus_1068#1      A--------------------------------- 356