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Oryza sativa
cluster # 10683 cluster # 10683       Sequences # 8       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10683#0 length = 1767 sequences # 5  
consensus_10683#1 length = 1612 sequences # 2  
consensus_10683#2 length = 229 sequences # 1  

consensusID : consensus_10683#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1767
fasta sequence
                              [CACACAGCTCGTATTTTCCTAGCCCAGTAGCCCACTAGCCGGCATGGAGAAGAAGCGGGTGGTCATCGTCGGCGCCGGCGTGAGCGGCCTGGCGGCGTGCAAGCAACTGCTGGAGCGCGGCTGCCGGCCGGTGGTGTTCGAGGCGGACACCGGCCTCGGCGGCGTGTGGGCGCGGACGCCGGAGTGCACCGCGCTGCAGACGCCGCGGCCCATGTACCAGTACTCCGACTTCCCGTGGCCGGAGACGGTGACGGAGGTGTTCCCGGACCACCGCCAGGTGATGGACTACCTCGGCGCCTACGCTCGCCGCTTCGGCGTGCTCGACTGCATCAGGTTCGGCCACCGGGTGGCGGGGATGGAGTACGTCGGCGTCGGCGAGGAGGCTGTGGCGGCGTGGGATGAGTGGGCTGGGAACGGCGACGCTTTCGGCTCCGGCTCCGGCGAGTGGCGGCTAGAGGTGGTCGACGGTGAGGGCCATATTGAGACACACAAGGCGGATTTTGTCATACTTTGTATTGGGAGGTTCAGTGGAGTGCCCAACATACCAACATTTCCTCCAGGCAAAGGTCCAGAAGCATTTGATGGCCAGGTGATCCACTCCATGGATTACTCCAAGATGGGCACCAAGAATTCTAAGGAAATGATCAAGGGCAAGCGTGTCACGATCGTTGGCTACCTCAAATCAGCACTTGACATTGCTGCAGAATGTGCAGAAGTAAATGGTACTGAGATTCCATGTACAATGGTGGTCCGAACAAAGCATTGGATCATACCAGACTATTTTGCATGGGGCGTCCACATCTCAAAGCTGTATCTTAATCGGTTTTCTGAGCTTCTTATTCACAAGCCTGGTGAAGGCTTACTCCTTAGCATCTTGGCCACCCTCTTGACTCCATTGAGATGGATATTTTCGAAGTTTGCAGAAAGCTATTATTCCATTCCAATGAAGAAGTATGACATGGTGCCTGACCATAGCCTATTTGAGGCTTTGATTACATGCTTGGTTGCCATTACACCCAAAGACCATTACAAGAGATTAGAAGAAGGCAGCATTGTTCTGAAGAAATCAAAGACA-TTTAGCTTTTGCAAGGAAGGTGTGCTTGTCGAAGGCCAATCTTCGCCGATAAAGAGCGATATAGTGATCTTTGGAACTGGGTTCAGAGGGGATCAGAAGATCAAGGAGATGTTCACTTCTGAATACTTTCAGAGCATTGCAGTAGGCTCTGCATCTACAACTGTACCTCTCTACAGGGAGATCATTCACCCAAAGATCCCGCAGCTCGCGGTTATCGGCTATTCAGAGAGCTTGGCAAATCTCTACACATCAGAATTACGGGCCAAGTGGCTGGCACATTTCATGGATGGTGGCTTCAGGTTGCCAAGCATCAGTGTGATGCAGAATGATGTCCTGGAATGGGAGAAGTTCATGAAGCGCTATTCTCGTGGTTACTTTCGCAGATCCTGCATCGGAATCCTTCACATCTGGTACAATGATCAGCTATGCCGGGACATGGGGTGCAATCCGAGGAGGAAGAACGGATTCTGGGCTGATTTATTCG-ACGTTT-ATGGCCCTAGTGATTATATTGATCTTTTCCCCAAGAAAGAGTAGTACTTTCGA-CTC-GGAGTCGTGTGGAATAAATTTATCGCCTGATCATGCTTGTTTTAAG-GTTGTCACTACCTGGTTTCTTGGATTTCTGCTGTTTTGCATAGTGCAAATTCAGTAAACCGTGTGAAGTGTAAGGTACAGTTGTGTAATATAAGGAGATG]

[+] EMBL AK071801             [CACACAGCTCGTATTTTCCTAGCCCAGTAGCCCACTAGCCGGCATGGAGAAGAAGCGGGTGGTCATCGTCGGCGCCGGCGTGAGCGGCCTGGCGGCGTGCAAGCAACTGCTGGAGCGCGGCTGCCGGCCGGTGGTGTTCGAGGCGGACACCGGCCTCGGCGGCGTGTGGGCGCGGACGCCGGAGTGCACCGCGCTGCAGACGCCGCGGCCCATGTACCAGTACTCCGACTTCCCGTGGCCGGAGACGGTGACGGAGGTGTTCCCGGACCACCGCCAGGTGATGGACTACCTCGGCGCCTACGCTCGCCGCTTCGGCGTGCTCGACTGCATCAGGTTCGGCCACCGGGTGGCGGGGATGGAGTACGTCGGCGTCGGCGAGGAGGCTGTGGCGGCGTGGGATGAGTGGGCTGGGAACGGCGACGCTTTCGGCTCCGGCTCCGGCGAGTGGCGGCTAGAGGTGGTCGACGGTGAGGGCCATATTGAGACACACAAGGCGGATTTTGTCATACTTTGTATTGGGAGGTTCAGTGGAGTGCCCAACATACCAACATTTCCTCCAGGCAAAGGTCCAGAAGCATTTGATGGCCAGGTGATCCACTCCATGGATTACTCCAAGATGGGCACCAAGAATTCTAAGGAAATGATCAAGGGCAAGCGTGTCACGATCGTTGGCTACCTCAAATCAGCACTTGACATTGCTGCAGAATGTGCAGAAGTAAATGGTACTGAGATTCCATGTACAATGGTGGTCCGAACAAAGCATTGGATCATACCAGACTATTTTGCATGGGGCGTCCACATCTCAAAGCTGTATCTTAATCGGTTTTCTGAGCTTCTTATTCACAAGCCTGGTGAAGGCTTACTCCTTAGCATCTTGGCCACCCTCTTGACTCCATTGAGATGGATATTTTCGAAGTTTGCAGAAAGCTATTATTCCATTCCAATGAAGAAGTATGACATGGTGCCTGACCATAGCCTATTTGAGGCTTTGATTACATGCTTGGTTGCCATTACACCCAAAGACCATTACAAGAGATTAGAAGAAGGCAGCATTGTTCTGAAGAAATCAAAGACATTTTAGCTTTTGCAAGGAAGGTGTGCTTGTCGAAGGCCAATCTTCGCCGATAAAGAGCGATATAGTGATCTTTGGAACTGGGTTCAGAGGGGATCAGAAGATCAAGGAGATGTTCACTTCTGAATACTTTCAGAGCATTGCAGTAGGCTCTGCATCTACAACTGTACCTCTCTACAGGGAGATCATTCACCCAAAGATCCCGCAGCTCGCGGTTATCGGCTATTCAGAGAGCTTGGCAAATCTCTACACATCAGAATTACGGGCCAAGTGGCTGGCACATTTCATGGATGGTGGCTTCAGGTTGCCAAGCATCAGTGTGATGCAGAATGATGTCCTGGAATGGGAGAAGTTCATGAAGCGCTATTCTCGTGGTTACTTTCGCAGATCCTGCATCGGAATCCTTCACATCTGGTACAATGATCAGCTATGCCGGGACATGGGGTGCAATCCGAGGAGGAAGAACGGATTCTGGGCTGATTTATTCG ACGTTT ATGGCCCTAGTGATTATATTGATCTTTTCCCCAAGAAAGAGTAGTACTTTCGA CTC GGAGTCGTGTGGAATAAATTTATCGCCTGATCATGCTTGTTTTAAG GTTGTCACTACCTGGTTTCTTGGATTTCTGCTGTTTTGCATAGTGCAAATTCAGTAAACCGTGTGAAGTGTAAGGTACAGTTGTGTAATATAAGGAGATG]
[+] EMBL CF302979             [                                                                                                                                                                                                                                                                                                                                                                                                                                 CGACGCTTTCGGCTCCGGCTCCGGCGAGTGGCGGCTAGAGGTGGTCGACGGTGAGGGCCATATTGAGACACACAAGGCGGATTTTGTCATACTTTGTATTGGGAGGTTCAGTGGAGTGCCCAACATACCAACATTTCCTCCATGCAAAGGTCCAGAAGCATTTGATGGCCAGGTGATCCACTCCATGGATTACTCCAAGATGGGCACCAAGAATTCTAAGGAAATGATCAAGGGCAAGCGTGTCACGATCGTTGGCTACCTCAAATCAGCACTTGACATTGCTGCAGAATGTGCAGAAGTAAATGGTACTGAGATTCCATGTACAATGGTGGTCCGAACAAAGCATTGGATCATACCAGACTATTTTGCATGGGGCGTCCACATCTCAAAGCTGTATCTTAATCGGTTTTCTGAGCTTCTTATTCACAAGCCTGGTGAAGGCTTACTCCTTAGCATCTTGGCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CF304123             [                                                                                                                                                                                                                                                                                                                                                                                                                                               CCGGCTCCGGCGAGTGGCGGCTAGAGGTGGTCGACGGTGAGGGCCATATTGAGACACACAAGGCGGATTTTGTCATACTTTGTATTGGGAGGTTCAGTGGAGTGCCCAACATACCAACATTTCCTTCAGTCAAAGGTCCAGAAGCATTTGATGGCCAGGTGATCCACTCCATGGATTACTCCAAGATGGGCACCAAGAATTCTAAGGAAATGATCAAGGGCAAGCGTGTCACGATCGTTGGCTACCTCAAATCAGCACTTGACATTGCTGCAGAATGTGCAGAAGTAAATGGTACTGAGATTCCATGTACAATGGCGGCCCGAACAAAGCATTGGATCATACCAGACTATTTTGCATGGGGCGTGCACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AK120831             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GGGGCGTCCACATCTCAAAGCTGTATCTTAATCGGTTTTCTGAGCTTCTTATTCACAAGCCTGGTGAAGGCTTACTCCTTAGCATCTTGGCCACCCTCTTGACTCCATTGAGATGGATATTTTCGAAGTTTGCAGAAAGCTATTATTCCATTCCAATGAAGAAGTATGACATGGTGCCTGACCATAGCCTATTTGAGGCTTTGATTACATGCTTGGTTGCCATTACACCCAAAGACCATTACAAGAGATTAGAAGAAGGCAGCATTGTTCTGAAGAAATCAAAGACA TTTAGCTTTTGCAAGGAAGGTGTGCTTGTCGAAGGCCAATCTTCGCCGATAAAGAGCGATATAGTGATCTTTGGAACTGGGTTCAGAGGGGATCAGAAGATCAAGGAGATGTTCACTTCTGAATACTTTCAGAGCATTGCAGTAGGCTCTGCATCTACAACTGTACCTCTCTACAGGGAGATCATTCACCCAAAGATCCCGCAGCTCGCGGTTATCGGCTATTCAGAGAGCTTGGCAAATCTCTACACATCAGAATTACGGGCCAAGTGGCTGGCACATTTCATGGATGGTGGCTTCAGGTTGCCAAGCATCAGTGTGATGCAGAATGATGCCCTGGAATGGTAGACGTTCATGAAGCGCTATTGTTGTGGGTACTTTAGCAGATACTGCATCGGAATCATTCACATCTGGTACAATGATCAGCTAGGCCGGCACATGGGGGTCAATCCGAGGAGGAAGAACGGATTCTGGGCTCATTTATTCGCACGTTTAATGGCCCTAGTGACAATACTGATCTTTTCCCCAAGAAAGAGTAGTACTTTAGAGCTCTGGAGTCGTGCGGAATAAATTAAACGCCTGATCATGCATGTTTTAAGCGTTGTCA                                                                                             ]
[+] EMBL CA999328             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TTGGCCACCCTCTTGACTCCATTGAGATGGATATTTTCGAAGTTTGCAGAAAGCTATTATTCCATTCCAATGAAGAAGTATGACATGGTGCCTGACCATAGCCTATTTGAGGCTTTGATTACATGCTTGGTTGCCATTACACCCAAAGACCATTACAAGAGATTAGAAGAAGGCAGCATTGTTCTGAAGAAATCAAAGACA TTTAGCTTTTGCAAGGAAGGTGTGCTTGTCGAAGGCCAATCTTCACCGATAAAGAGCGATATAGTGATCTTTGGAACTGGGTTCAGAGGGGATCAGAAGATCAAGGAGATGTTCACTTCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]


>consensus_10683#0 CACACAGCTCGTATTTTCCTAGCCCAGTAGCCCACTAGCCGGCATGGAGAAGAAGCGGGT GGTCATCGTCGGCGCCGGCGTGAGCGGCCTGGCGGCGTGCAAGCAACTGCTGGAGCGCGG CTGCCGGCCGGTGGTGTTCGAGGCGGACACCGGCCTCGGCGGCGTGTGGGCGCGGACGCC GGAGTGCACCGCGCTGCAGACGCCGCGGCCCATGTACCAGTACTCCGACTTCCCGTGGCC GGAGACGGTGACGGAGGTGTTCCCGGACCACCGCCAGGTGATGGACTACCTCGGCGCCTA CGCTCGCCGCTTCGGCGTGCTCGACTGCATCAGGTTCGGCCACCGGGTGGCGGGGATGGA GTACGTCGGCGTCGGCGAGGAGGCTGTGGCGGCGTGGGATGAGTGGGCTGGGAACGGCGA CGCTTTCGGCTCCGGCTCCGGCGAGTGGCGGCTAGAGGTGGTCGACGGTGAGGGCCATAT TGAGACACACAAGGCGGATTTTGTCATACTTTGTATTGGGAGGTTCAGTGGAGTGCCCAA CATACCAACATTTCCTCCAGGCAAAGGTCCAGAAGCATTTGATGGCCAGGTGATCCACTC CATGGATTACTCCAAGATGGGCACCAAGAATTCTAAGGAAATGATCAAGGGCAAGCGTGT CACGATCGTTGGCTACCTCAAATCAGCACTTGACATTGCTGCAGAATGTGCAGAAGTAAA TGGTACTGAGATTCCATGTACAATGGTGGTCCGAACAAAGCATTGGATCATACCAGACTA TTTTGCATGGGGCGTCCACATCTCAAAGCTGTATCTTAATCGGTTTTCTGAGCTTCTTAT TCACAAGCCTGGTGAAGGCTTACTCCTTAGCATCTTGGCCACCCTCTTGACTCCATTGAG ATGGATATTTTCGAAGTTTGCAGAAAGCTATTATTCCATTCCAATGAAGAAGTATGACAT GGTGCCTGACCATAGCCTATTTGAGGCTTTGATTACATGCTTGGTTGCCATTACACCCAA AGACCATTACAAGAGATTAGAAGAAGGCAGCATTGTTCTGAAGAAATCAAAGACATTTAG CTTTTGCAAGGAAGGTGTGCTTGTCGAAGGCCAATCTTCGCCGATAAAGAGCGATATAGT GATCTTTGGAACTGGGTTCAGAGGGGATCAGAAGATCAAGGAGATGTTCACTTCTGAATA CTTTCAGAGCATTGCAGTAGGCTCTGCATCTACAACTGTACCTCTCTACAGGGAGATCAT TCACCCAAAGATCCCGCAGCTCGCGGTTATCGGCTATTCAGAGAGCTTGGCAAATCTCTA CACATCAGAATTACGGGCCAAGTGGCTGGCACATTTCATGGATGGTGGCTTCAGGTTGCC AAGCATCAGTGTGATGCAGAATGATGTCCTGGAATGGGAGAAGTTCATGAAGCGCTATTC TCGTGGTTACTTTCGCAGATCCTGCATCGGAATCCTTCACATCTGGTACAATGATCAGCT ATGCCGGGACATGGGGTGCAATCCGAGGAGGAAGAACGGATTCTGGGCTGATTTATTCGA CGTTTATGGCCCTAGTGATTATATTGATCTTTTCCCCAAGAAAGAGTAGTACTTTCGACT CGGAGTCGTGTGGAATAAATTTATCGCCTGATCATGCTTGTTTTAAGGTTGTCACTACCT GGTTTCTTGGATTTCTGCTGTTTTGCATAGTGCAAATTCAGTAAACCGTGTGAAGTGTAA GGTACAGTTGTGTAATATAAGGAGATG



consensusID : consensus_10683#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1612
fasta sequence
                              [AAAAATATTTTTATCCATTATATATATTATGATTAGATGACATGGTCAAAAGATATATTTCGAGGAAGTATAGCACTGACCAACTATAAATACCACCTCGCTCATCAGACTCCAAACAACTCACACAGCTCGCACTTTCCTAGCCCACTAGCCATCATGGAGAAGAAGCGGGTGGTCATCGTCGGCGCCGGCGTGAGCGGCCTGGCCGCGTGCAAGCAACTGCTGGAGCGCGGCTGCCGGCCGGTGGTGTTCGAGGCGGACACCGGCGTGGGTGGCGTGTGGGCGTGGACGCTGGAGGGCACCGCGCTGCAGACTCCGCGGCCCATGTACCAGTACTCCGACTTCCCGTGGCCGGAGACGGTGACGGAGGTGTTCCCGGACCACCGCCAGGTGATGGACTACCTCGGCGCCTACGCGCGCCGCTTCGGGGTGCTCGACTGCGTCAGGTTCGGCCACCGGGTGGCGGGGATGGAGTACGTCGGCGTCGGCAAGGAGGATGTGGCGGCGTGGGATGAGTGGGCCGGGAATGGCGACGCTTTTGGCTCCGGCTCCGGCGAGTGGCGGCTGGAGGTGGCCGACGGTGAGGGCCATCTTGAGGTGAGAATTTCGCTACGGCTTTGCGTGGAGGAAGTTTCCAAATTTGCTGGAAAAAAATAATTTATAAGTAAAACCTTATGCATGTGTCATTAACAATTTAAAAGCAAATAATAAAAATCTTAATCTTAACTAATTAAAATATTCGTAATTTTCTGTTCGTCGCAAGTCCGTCGGCGGTGCGCCTTCGCAGCCCCCGAATCCGAATTGGATAAGGAAAACACTTTCCAAAATCGGCACAACCGAATCAGATGCACACACCGCAAGGAAAAGAACAAAACCTAACCAATCTTTGCCCCCAAAAAATCAACCACAATCATCACAAAATCACAAAATAATCATCCAAGAAGAACAACAATATACACCACAAACTTCACTCGCCTGCCACCGGATCCGCCCTCGGCCATCGCCACCGTGGCCCTCGGCCGTTGCCACCGCTGCCCTCGGCCGTTGCTACCGCCACTGGGTCCATCCGCGGCCGCCGCCGACACCACCACCGCCGCCGGAGGGAGAAGAGAGGCGGCGGAGGGAGCCGCCGCTACCGGATCTGCCCACCGCCACTGTTAATGGATCCACCCGCGGACGCCGCCAACGCCGCCACCACCGTCGGATCGACCGCGGGACTTGGCGAGAGGGGGCGGAGGGAGCCACCGCCGCTTGATCCGCCTGCGGAGGCCGCCGCCGCCGGCGGATCTGCCACAGGAGGAAGGCTAGAGGGGATGGAGGGAGCCGCCGCCACCACCCTCGGATTCGCCCGCGACCGCCGTCAACCCGCGCCACCGCGGGAGGGAGGCGAGGAGGAGAGGAGGAGGGAGCGAGGAGGCGAGACAGGACAAAGGGAGCGGCCGCCGGCGAGGAAAGCGAGACAGGTCGGAGGGAGCCGTCGCCGCCGCTCGCGGGGAGAGGGGGAAGGGCACCGCCGCAGCCGCTCGTGGTAGGGAGGAGGGCGGGCGCCGGAACCGCCGCCATCGCTTTTCGATCAAGAGAGAGAGAAGGGATCGTGGGCGCGGAGGGTGGA]

[-] EMBL AK105500             [AAAAATATTTTTATCCATTATATATATTATGATTAGATGACATGGTCAAAAGATATATTTCGAGGAAGTATAGCACTGACCAACTATAAATACCACCTCGCTCATCAGACTCCAAACAACTCACACAGCTCGCACTTTCCTAGCCCACTAGCCATCATGGAGAAGAAGCGGGTGGTCATCGTCGGCGCCGGCGTGAGCGGCCTGGCCGCGTGCAAGCAACTGCTGGAGCGCGGCTGCCGGCCGGTGGTGTTCGAGGCGGACACCGGCGTGGGTGGCGTGTGGGCGTGGACGCTGGAGGGCACCGCGCTGCAGACTCCGCGGCCCATGTACCAGTACTCCGACTTCCCGTGGCCGGAGACGGTGACGGAGGTGTTCCCGGACCACCGCCAGGTGATGGACTACCTCGGCGCCTACGCGCGCCGCTTCGGGGTGCTCGACTGCGTCAGGTTCGGCCACCGGGTGGCGGGGATGGAGTACGTCGGCGTCGGCAAGGAGGATGTGGCGGCGTGGGATGAGTGGGCCGGGAATGGCGACGCTTTTGGCTCCGGCTCCGGCGAGTGGCGGCTGGAGGTGGCCGACGGTGAGGGCCATCTTGAGGTGAGAATTTCGCTACGGCTTTGCGTGGAGGAAGTTTCCAAATTTGCTGGAAAAAAATAATTTATAAGTAAAACCTTATGCATGTGTCATTAACAATTTAAAAGCAAATAATAAAAATCTTAATCTTAACTAATTAAAATATTCGTAATTTTCTGTTCGTCGCAAGTCCGTCGGCGGTGCGCCTTCGCAGCCCCCGAATCCGAATTGGATAAGGAAAACACTTTCCAAAATCGGCACAACCGAATCAGATGCACACACCGCAAGGAAAAGAACAAAACCTAACCAATCTTTGCCCCCAAAAAATCAACCACAATCATCACAAAATCACAAAATAATCATCCAAGAAGAACAACAATATACACCACAAACTTCACTCGCCTGCCACCGGATCCGCCCTCGGCCATCGCCACCGTGGCCCTCGGCCGTTGCCACCGCTGCCCTCGGCCGTTGCTACCGCCACTGGGTCCATCCGCGGCCGCCGCCGACACCACCACCGCCGCCGGAGGGAGAAGAGAGGCGGCGGAGGGAGCCGCCGCTACCGGATCTGCCCACCGCCACTGTTAATGGATCCACCCGCGGACGCCGCCAACGCCGCCACCACCGTCGGATCGACCGCGGGACTTGGCGAGAGGGGGCGGAGGGAGCCACCGCCGCTTGATCCGCCTGCGGAGGCCGCCGCCGCCGGCGGATCTGCCACAGGAGGAAGGCTAGAGGGGATGGAGGGAGCCGCCGCCACCACCCTCGGATTCGCCCGCGACCGCCGTCAACCCGCGCCACCGCGGGAGGGAGGCGAGGAGGAGAGGAGGAGGGAGCGAGGAGGCGAGACAGGACAAAGGGAGCGGCCGCCGGCGAGGAAAGCGAGACAGGTCGGAGGGAGCCGTCGCCGCCGCTCGCGGGGAGAGGGGGAAGGGCACCGCCGCAGCCGCTCGTGGTAGGGAGGAGGGCGGGCGCCGGAACCGCCGCCATCGCTTTTCGATCAAGAGAGAGAGAAGGGATCGTGGGCGCGGAGGGTGGA]
[-] EMBL AK109448             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CAAAATAATCATCCAAGAAGAACAACAATATACACCACAAACTTCACTCGCCTGCCACCGGATCCGCCCTCGGCCATCGCCACCGTGGCCCTCGGCCGTTGCCACCGCTGCCCTCGGCCGTTGCTACCGCCACTGGGTCCATCCGCGGCCGCCGCCGACACCACCACCGCCGCCGGAGGGAGAAGAGAGGCGGCGGAGGGAGCCGCCGCTACCGGATCTGCCCACCGCCACTGTTAATGGATCCACCCGCGGACGCCGCCAACGCCGCCACCACCGTCGGATCGACCGCGGGACTTGGCGAGAGGGGGCGGAGGGAGCCACCGCCGCTTGATCCGCCTGCGGAGGCCGCCGCCGCCGGCGGATCTGCCACAGGAGGAAGGCTAGAGGGGATGGAGGGAGCCGCCGCCACCACCCTCGGATTCGCCCGCGACCGCCGTCAACCCGCGCCACCGCGGGAGGGAGGCGAGGAGGAGAGGAGGAGGGAGCGAGGAGGCGAGACAGGACAAAGGGAGCGGCCGCCGGCGAGGAAAGCGAGACAGGTCGGAGGGAGCCGCCGCCGCCGCTCGCGGGGAGAGGGGGAAGGGCACCGCCGCAGCCGCTCGTGGTAGGGAGGAGGGCGGGCGCCGGAACCGCCGCCATCGCTTTTCGATCA  AGAGAGAGAAGGGATCGTGGGCGCGGA       ]


>consensus_10683#1 AAAAATATTTTTATCCATTATATATATTATGATTAGATGACATGGTCAAAAGATATATTT CGAGGAAGTATAGCACTGACCAACTATAAATACCACCTCGCTCATCAGACTCCAAACAAC TCACACAGCTCGCACTTTCCTAGCCCACTAGCCATCATGGAGAAGAAGCGGGTGGTCATC GTCGGCGCCGGCGTGAGCGGCCTGGCCGCGTGCAAGCAACTGCTGGAGCGCGGCTGCCGG CCGGTGGTGTTCGAGGCGGACACCGGCGTGGGTGGCGTGTGGGCGTGGACGCTGGAGGGC ACCGCGCTGCAGACTCCGCGGCCCATGTACCAGTACTCCGACTTCCCGTGGCCGGAGACG GTGACGGAGGTGTTCCCGGACCACCGCCAGGTGATGGACTACCTCGGCGCCTACGCGCGC CGCTTCGGGGTGCTCGACTGCGTCAGGTTCGGCCACCGGGTGGCGGGGATGGAGTACGTC GGCGTCGGCAAGGAGGATGTGGCGGCGTGGGATGAGTGGGCCGGGAATGGCGACGCTTTT GGCTCCGGCTCCGGCGAGTGGCGGCTGGAGGTGGCCGACGGTGAGGGCCATCTTGAGGTG AGAATTTCGCTACGGCTTTGCGTGGAGGAAGTTTCCAAATTTGCTGGAAAAAAATAATTT ATAAGTAAAACCTTATGCATGTGTCATTAACAATTTAAAAGCAAATAATAAAAATCTTAA TCTTAACTAATTAAAATATTCGTAATTTTCTGTTCGTCGCAAGTCCGTCGGCGGTGCGCC TTCGCAGCCCCCGAATCCGAATTGGATAAGGAAAACACTTTCCAAAATCGGCACAACCGA ATCAGATGCACACACCGCAAGGAAAAGAACAAAACCTAACCAATCTTTGCCCCCAAAAAA TCAACCACAATCATCACAAAATCACAAAATAATCATCCAAGAAGAACAACAATATACACC ACAAACTTCACTCGCCTGCCACCGGATCCGCCCTCGGCCATCGCCACCGTGGCCCTCGGC CGTTGCCACCGCTGCCCTCGGCCGTTGCTACCGCCACTGGGTCCATCCGCGGCCGCCGCC GACACCACCACCGCCGCCGGAGGGAGAAGAGAGGCGGCGGAGGGAGCCGCCGCTACCGGA TCTGCCCACCGCCACTGTTAATGGATCCACCCGCGGACGCCGCCAACGCCGCCACCACCG TCGGATCGACCGCGGGACTTGGCGAGAGGGGGCGGAGGGAGCCACCGCCGCTTGATCCGC CTGCGGAGGCCGCCGCCGCCGGCGGATCTGCCACAGGAGGAAGGCTAGAGGGGATGGAGG GAGCCGCCGCCACCACCCTCGGATTCGCCCGCGACCGCCGTCAACCCGCGCCACCGCGGG AGGGAGGCGAGGAGGAGAGGAGGAGGGAGCGAGGAGGCGAGACAGGACAAAGGGAGCGGC CGCCGGCGAGGAAAGCGAGACAGGTCGGAGGGAGCCGTCGCCGCCGCTCGCGGGGAGAGG GGGAAGGGCACCGCCGCAGCCGCTCGTGGTAGGGAGGAGGGCGGGCGCCGGAACCGCCGC CATCGCTTTTCGATCAAGAGAGAGAGAAGGGATCGTGGGCGCGGAGGGTGGA



consensusID : consensus_10683#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 229
fasta sequence
                              [GACCTGGATATCCGCGAACTCAGCACACAGCTATTATCCCCTCCCCATGAAGAAGTATGACATGGTGCCTGACCATAGCCTATGTGAGGCTTGGATTACCTGCTTGGTTGCCATCCCACCCCAAGACCCTCACCAGACATCACAACAAGGCCCCCTCGTCCTGAAGAAATCATCGACCTTCAACCTTTGCAAGGACGGTGTGCTCGTCGACCGCCATTCCTCGCCCCAT]

[+] EMBL CA753175             [GACCTGGATATCCGCGAACTCAGCACACAGCTATTATCCCCTCCCCATGAAGAAGTATGACATGGTGCCTGACCATAGCCTATGTGAGGCTTGGATTACCTGCTTGGTTGCCATCCCACCCCAAGACCCTCACCAGACATCACAACAAGGCCCCCTCGTCCTGAAGAAATCATCGACCTTCAACCTTTGCAAGGACGGTGTGCTCGTCGACCGCCATTCCTCGCCCCAT]


>consensus_10683#2 GACCTGGATATCCGCGAACTCAGCACACAGCTATTATCCCCTCCCCATGAAGAAGTATGA CATGGTGCCTGACCATAGCCTATGTGAGGCTTGGATTACCTGCTTGGTTGCCATCCCACC CCAAGACCCTCACCAGACATCACAACAAGGCCCCCTCGTCCTGAAGAAATCATCGACCTT CAACCTTTGCAAGGACGGTGTGCTCGTCGACCGCCATTCCTCGCCCCAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10683#0      ------------------------------------------------------------
consensus_10683#2      ------------------------------------------------------------
consensus_10683#1      AAAAATATTTTTATCCATTATATATATTATGATTAGATGACATGGTCAAAAGATATATTT 60
                                                                                   

consensus_10683#0      ----------------------------------------------------CACACAGC 8
consensus_10683#2      ------------------------------------------------------------
consensus_10683#1      CGAGGAAGTATAGCACTGACCAACTATAAATACCACCTCGCTCATCAGACTCCAAACAAC 120
                                                                                   

consensus_10683#0      TCGTATT-TTCCTAGCCCAGTAGCCCACTAGCCGGCATGGAGAAGAAGCGGGTGGTCATC 67
consensus_10683#2      ------------------------------------------------------------
consensus_10683#1      TCACACAGCTCGCACTTTCCTAGCCCACTAGCCATCATGGAGAAGAAGCGGGTGGTCATC 180
                                                                                   

consensus_10683#0      GTCGGCGCCGGCGTGAGCGGCCTGGCGGCGTGCAAGCAACTGCTGGAGCGCGGCTGCCGG 127
consensus_10683#2      ------------------------------------------------------------
consensus_10683#1      GTCGGCGCCGGCGTGAGCGGCCTGGCCGCGTGCAAGCAACTGCTGGAGCGCGGCTGCCGG 240
                                                                                   

consensus_10683#0      CCGGTGGTGTTCGAGGCGGACACCGGCCTCGGCGGCGTGTGGGCGCGGACGCCGGAGTGC 187
consensus_10683#2      ------------------------------------------------------------
consensus_10683#1      CCGGTGGTGTTCGAGGCGGACACCGGCGTGGGTGGCGTGTGGGCGTGGACGCTGGAGGGC 300
                                                                                   

consensus_10683#0      ACCGCGCTGCAGACGCCGCGGCCCATGTACCAGTACTCCGACTTCCCGTGGCCGGAGACG 247
consensus_10683#2      ------------------------------------------------------------
consensus_10683#1      ACCGCGCTGCAGACTCCGCGGCCCATGTACCAGTACTCCGACTTCCCGTGGCCGGAGACG 360
                                                                                   

consensus_10683#0      GTGACGGAGGTGTTCCCGGACCACCGCCAGGTGATGGACTACCTCGGCGCCTACGCTCGC 307
consensus_10683#2      ------------------------------------------------------------
consensus_10683#1      GTGACGGAGGTGTTCCCGGACCACCGCCAGGTGATGGACTACCTCGGCGCCTACGCGCGC 420
                                                                                   

consensus_10683#0      CGCTTCGGCGTGCTCGACTGCATCAGGTTCGGCCACCGGGTGGCGGGGATGGAGTACGTC 367
consensus_10683#2      ------------------------------------------------------------
consensus_10683#1      CGCTTCGGGGTGCTCGACTGCGTCAGGTTCGGCCACCGGGTGGCGGGGATGGAGTACGTC 480
                                                                                   

consensus_10683#0      GGCGTCGGCGAGGAGGCTGTGGCGGCGTGGGATGAGTGGGCTGGGAACGGCGACGCTTTC 427
consensus_10683#2      ------------------------------------------------------------
consensus_10683#1      GGCGTCGGCAAGGAGGATGTGGCGGCGTGGGATGAGTGGGCCGGGAATGGCGACGCTTTT 540
                                                                                   

consensus_10683#0      GGCTCCGGCTCCGGCGAGTGGCGGCTAGAGGTGGTCGACGGTGAGGGCCATATTGAGACA 487
consensus_10683#2      ------------------------------------------------------------
consensus_10683#1      GGCTCCGGCTCCGGCGAGTGGCGGCTGGAGGTGGCCGACGGTGAGGGCCATCTTGAGGT- 599
                                                                                   

consensus_10683#0      CACAAGGCGGATTTTGTCATACTTTGTATTGGGAGGTTCAGTGGAGTGCCCAACATACCA 547
consensus_10683#2      ------------------------------------------------------------
consensus_10683#1      ------GAGAATTTCGCTACGGCTTTGCGTGGAGGAAGTTTCCAAATTTGCTGGAAAAAA 653
                                                                                   

consensus_10683#0      ACATTTCCTCCAGGCAAAGGTCCAGAAGCATTTGATGGCCAGGTGATCCACTCCATGGAT 607
consensus_10683#2      ------------------------------------------------------------
consensus_10683#1      ATAATT--TATAAGTAAAA--CCTTATGCATGTG------------------TCATTAAC 691
                                                                                   

consensus_10683#0      TACTCCAAGATGGGCACCAAGAATTCTAAGGAAATGATCAAGGGCAAGCGTGTCACGATC 667
consensus_10683#2      ------------------------------------------------------------
consensus_10683#1      AATTTAAAAGCAAATAATAAAAATCTTAATC---TTAACTAATTAAAATATTCGTAATTT 748
                                                                                   

consensus_10683#0      GTTGGCTACCTCAAATCAGCACTTGACATTGCTGCAGAATGTGCAGAAGTAAATGGTACT 727
consensus_10683#2      ------------------------------------------------------------
consensus_10683#1      TCTGTTCGTCGCAAGTCCGTCGGCGGTGCGCCTTCGCAGCCCCCGAATCCGAATTGGATA 808
                                                                                   

consensus_10683#0      GAGATTCCA-TGTACAATGGTGGTCCGAACAAAGCATTGGATCATACCAGACTATTTTGC 786
consensus_10683#2      ------------------------------------------------------------
consensus_10683#1      AGGAAAACACTTTCCAAAATCGGCACAACCGAATCAGATGCACACACCGCA--------- 859
                                                                                   

consensus_10683#0      ATGGGGCGTCCACATCTCAAAGCTGTATCTTAATCGGTTTTCTGAGCTTCTTATTCACAA 846
consensus_10683#2      ------------------------------------------------------------
consensus_10683#1      AGGAAAAGAACAAAACCTAACCAATCTTTGCCCCCAAAAAATCAACCACAATCATCACAA 919
                                                                                   

consensus_10683#0      GCCTGGTGAAGGCTTACTCCTTAGCATCTTGGCCACCCTCTTGACTCCATTGAGATGGAT 906
consensus_10683#2      ---------------------------------------------------GACCTGGAT 9
consensus_10683#1      AATCACAAAATAATCATCCA--AGAAGAACAACAATATACACCACAAACTTCACTCGCCT 977
                                                                           *   *  *

consensus_10683#0      ATTTTCGAAGTTTGCAGAAAGCTATTATTCCATTCCAATGAAGAAGTATGACATGGTGCC 966
consensus_10683#2      ATCCGCGAACTCAGCACACAGCTATTATCCCCTCCCCATGAAGAAGTATGACATGGTGCC 69
consensus_10683#1      GCCACCGGA-TCCGCCCTCGGCCATCGCCACCGTGGCCCTCGGCCGT-TGCCACCG---C 1032
                            ** * *  **     ** **     *           *  ** ** **  *   *

consensus_10683#0      TGACCATAGCCTATTTGA--GGCTTTGATTACATGCTTGGTTGCCATTACACCCAAAGAC 1024
consensus_10683#2      TGACCATAGCCTATGTGA--GGCTTGGATTACCTGCTTGGTTGCCATCCCACCCCAAGAC 127
consensus_10683#1      TGCCCTCGGCCGTTGCTACCGCCACTGGGTCCATCCGCGGCCGCCGCCG-ACACCACCAC 1091
                       ** **   ***  *   *  * *   *  * * * *  **  ***     ** * *  **

consensus_10683#0      CATTACAAGAGATTAGAAGAAGGCAGCATTGTTCTGAAGAAATCAAAGACATTTAGCTTT 1084
consensus_10683#2      CCTCACCAGACATCACAACAAGGCCCCCTCGTCCTGAAGAAATCATCGACCTTCAACCTT 187
consensus_10683#1      CGCCGCCGGAGGGAGAAGAGAGGCGGCGGAGGGA-GCCGCCGCTACCGGATCTGCCCACC 1150
                       *    *  **      *   ****  *   *    *  *     *  *    *   *   

consensus_10683#0      TGCAAGGAAGGTGTGCTTGTCGAAGGCCAATCTTCGCCG-ATAAAGAGCGATATAGTGAT 1143
consensus_10683#2      TGCAAGGACGGTGTGCTCGTCGACCGCCATTCCTCGCCCCAT------------------ 229
consensus_10683#1      GCCACTGTTAATGGATCCACCCGCGGACGCCGCCAACGCCGCCACCACCGTCGGATCGAC 1210
                         **  *    **       *    * *        *                       

consensus_10683#0      CTTTGGAACTGGGTTCAGAGGGGATCAGAAG--ATCAAGGAGATGTTCACTTCTGAATAC 1201
consensus_10683#2      ------------------------------------------------------------
consensus_10683#1      CGCGGGACTTGGCGAGAGGGGGCGGAGGGAGCCACCGCCGCTTGATCCGCCTGCGGAGGC 1270
                                                                                   

consensus_10683#0      TTTCAGAGCATTGCAGTAGGCTCTGCATCTACAACTGTACCTCTCTACAGGGAGATCATT 1261
consensus_10683#2      ------------------------------------------------------------
consensus_10683#1      CGCCGCCGCCGGCGGATCTGCCACAGGAGGAAGGCTAGAGGGGATGGAGGGAGCCGCCGC 1330
                                                                                   

consensus_10683#0      CACC--CAAAGATCCCGCAGCTCGCGGTTATCGGCTATTCAGAGAGCTTGGCAAATCTCT 1319
consensus_10683#2      ------------------------------------------------------------
consensus_10683#1      CACCACCCTCGGATTCGCCCGCGACCGCCGTCAACCCGCGCCACCGCGGGAGGGAGGCGA 1390
                                                                                   

consensus_10683#0      ACACATCAGAATTACGGGCCAAGTGGCTGGCACATTTCATGGATGGTGGCTTCAGGTTGC 1379
consensus_10683#2      ------------------------------------------------------------
consensus_10683#1      GGAGGAGAGGAGGAGGGAGCGAGGAGGCGAGACAGGACAAAGGGAGCGGCCGCCGGCGAG 1450
                                                                                   

consensus_10683#0      CAAGCATCAGTGTGATGCAGAATGATGTCCTGGAATGGGAGAAGTTCATGAAGCGCTATT 1439
consensus_10683#2      ------------------------------------------------------------
consensus_10683#1      GAAAGCGAGACAGGTCGGAGGGAGCCGTCGCCGCCGCTCGCGGGGAGAGGGGGAAGGGCA 1510
                                                                                   

consensus_10683#0      CTCGTGGTTACTTTCGCAGATCCTGCATCGGAATCCTTCACATCTGGTACAAT-GATCAG 1498
consensus_10683#2      ------------------------------------------------------------
consensus_10683#1      CCGCCGCAGCCGCTCGTGGTAGGGAGGAGGGCGGGCGCCGGAACCGCCGCCATCGCTTTT 1570
                                                                                   

consensus_10683#0      CTATGCCGGGACATGGGGTGCAATCCGAGGAGGAAGAACGGATTCTGGGCTGATTTATTC 1558
consensus_10683#2      ------------------------------------------------------------
consensus_10683#1      CGATCAAGAGAGAGAGAAGGGATCGTGGGCGCGGAGGGTGGA------------------ 1612
                                                                                   

consensus_10683#0      GACGTTTATGGCCCTAGTGATTATATTGATCTTTTCCCCAAGAAAGAGTAGTACTTTCGA 1618
consensus_10683#2      ------------------------------------------------------------
consensus_10683#1      ------------------------------------------------------------
                                                                                   

consensus_10683#0      CTCGGAGTCGTGTGGAATAAATTTATCGCCTGATCATGCTTGTTTTAAGGTTGTCACTAC 1678
consensus_10683#2      ------------------------------------------------------------
consensus_10683#1      ------------------------------------------------------------
                                                                                   

consensus_10683#0      CTGGTTTCTTGGATTTCTGCTGTTTTGCATAGTGCAAATTCAGTAAACCGTGTGAAGTGT 1738
consensus_10683#2      ------------------------------------------------------------
consensus_10683#1      ------------------------------------------------------------
                                                                                   

consensus_10683#0      AAGGTACAGTTGTGTAATATAAGGAGATG 1767
consensus_10683#2      -----------------------------
consensus_10683#1      -----------------------------
                                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)