These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10692#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 731 fasta sequence [TTTTTTTTTTTTTTTTTTTTNTTTTTTGAGAAAACAAGAACTCTCCCTTCATGTAGGGACGTATAAATTTTATTCAGTATTTAATTAATTAACATTAGTACACGTGATGAGGTTAAATACAGTTAAACACTTTTACATGAGCAATACAAATATACAATCACTGTAGAAACTACAAAGCATCTTCGAATTATCATGCAACCACAACTAGAGCCACAACCGTACATATATGGATACTAGCTACATGCAATCAAGCGTACGTAATAAGTGTATAACCCATGGCTTGCAAGCTTGCTATGTATATACGTACAGGACATGGGTAGAGCTGGGTAAGCTGCATCTAGCTCGATCATGGCTGAGCTTGTTCGCTCCCAATGTCATGGCCACTCCCCGGCATGTTCCCCGGGCTGCTCCAGCTGTCGTACTCCGGCCGCGGTATCGCGTGGTGGTTGTCGATGGACGTCCCCTCCGCCGTCGTCGTCTTCACCACGCCGTGCGCCAGCGGCGCCTCCTCCCCCGGCGCCGTGCGAGAAGTGACGGCGCCGAAGGCGTTGGCCATGA-CCATTGCGAGGATGAGAAGAGGGA-GAAGCTTCATGGTGAAAGGGA-GAAATTGGGGGA-TCTGGGAAGA-AGAATGAAGTCAATGTGAAATGACAC-TTTGGAGATTGGGA-GAGGG-AACAAACCCTAGCTAGGGAGAGGTGTACTTAGTTGGTA-ATTTGGTTTGACTAATGGTTCCC] [-] EMBL CA754878 [TTTTTTTTTTTTTTTTTTTTNTTTTTTGAGAAAACAAGAACTCTCCCTTCATGTAGGGACGTATAAATTTTATTCAGTATTTAATTAATTAACATTAGTACACGTGATGAGGTTAAATACAGTTAAACACTTTTACATGAGCAATACAAATATACAATCACTGTAGAAACTACAAAGCATCTTCGAATTATCATGCAACCACAACTAGAGCCACAACCGTACATATATGGATACTAGCTACATGCAATCAAGCGTACGTAATAAGTGTATAACCCATGGCTTGCAAGCTTGCTATGTATATACGTACAGGACATGGGTAGAGCTGGGTAAGCTGCATCTAGCTCGATCATGGCTGAGCTTGTTCGCTCCCAATGTCAT ] [+] EMBL BI305810 [ AGAACTCTCCCTTCATGTAGGGACGTATAAATTTTATTCAGTATTTAATTAATTAACATTAGTACACGTGATGAGGTTAAATACAGTTAAACACTTTTACATGAGCAATACAAATATACAATCACTGTAGAAACTACAAAGCATCTTCGAATTATCATGCAACCACAACTAGAGCCACAACCGTACATATATGGATACTAGCTACATGCAATCAAGCGTACGTAATAAGTGTATAACCCATGGCTTGCAAGCTTGCTATGTATATACGTACAGGACATGGGTAGAGCTGGGTAAGCTGCATCTAGCTCGATCATGGCTGAGCTTGTTCGCTCCCAATGTCATGGCCACTCCCCGGCATGTTCCCCGGGCTGCTCCAGCTGTCGTACTCCGGCCGCGGTATCGCGTGGTGGTTGTCGATGGACGTCCCCTCCGCCGTCGTCGTCTTCACCACGCCGTGCGCCAGCGGCGCCTCCTCCCCCGGCGCCGTGCGAGAAGTGACGGCGCCGAAGGCGTTGGCCATGA CCATTGCGAGGATGAGAAGAGGGA GAAGCTTCATGGTGAAAGGGA GAAATTGGGGGA TCTGGGAAGA AGAATGAAGTCAATGTGAAATGACAC TTTGGAGATTGGGA GAGGG AACANACCCTAGCTAGGGAGAGGTGTACTTAGTTGGTA ATTTGG ] [+] EMBL CB964555 [ GAACTCTCCCTTCATGTAGGGACGTATAAATTTTATTCAGTATTTAATTAATTAACATTAGTACACGTGATGAGGTTAAATACAGTTAAACACTTTTACATGAGCAATACAAATATACAATCACTGTAGAAACTACAAAGCATCTTCGAATTATCATGCAACCACAACTAGAGCCACAACCGTACATATATGGATACTAGCTACATGCAATCAAGCGTACGTAATAAGTGTATAACCCATGGCTTGCAAGCTTGCTATGTATATACGTACAGGACATGGGTAGAGCTGGGTAAGCTGCATCTAGCTCGATCATGGCTGAGCTTGTTCGCTCCCAATGTCATGGCCACTCCCCGGCATGTTCCCCGGGCTGCTCCAGCTGTCGTACTCCGGCCGCGGTATCGCGTGGTGGTTGTCGATGGACGTCCCCTCCGCCGTCGTCGTCTTCACCACGCCGTGCGCCAGCGGCGCCTCCTCCCCCGGCGCCGTGCGAGAAGTGACGGCGCCGAAGGCGTTGGCCATGA CCATTGCGAGGATGAGAAGAGGGA GAAGCTTCATGGTGAAAGGGA GAAATTGGGGGA TCTGGGAAGA AGAATGAAGTCAATGTGAAATGACAC TTTGGAGATTGGGA GAGGG AACAAACCCTAGCTAGGGAGAGGTGTACTTA ] [+] EMBL BU673590 [ CAGTATTTAATTAATTAACATTAGTACACGTGATGAGGTTAAATACAGTTAAACACTTTTACATGAGCAATACAAATATACAATCACTGTAGAAACTACAAAGCATCTTCGAATTATCATGCAACCACAACTAGAGCCACAACCGTACATATATGGATACTAGCTACATGCAATCAAGCGTACGTAATAAGTGTATAACCCATGGCTTGCAAGCTTGCTATGTATATACGTACAGGACATGGGTAGAGCTGGGTAAGCTGCATCTAGCTCGATCATGGCTGAGCTTGTACGCTCCCAATGTCATGGCCACTCCCCGGCATGTTCCCCGGGCTGCTCCAGCTGTCGTACTCCGGCCGCGGTATCGCGTGGTGGTTGTCGATGGACGTCCCCTCCGCCGTCGTCGTCTTCACCACGCCGTGCGCCAGCGGCGCCTCCTCCCCCGGCGCCGTGCGAGAAGTGACGGCGCCGAAGGCGTTGGCCATGACCCATTGCGAGGATGACAAGAGGGACGAAGCTTCATGGTGAAAGGGACGAAATTGGGGGACTCTGGGAAGACAGAATGACGTCAATGTGACATGACACTTTTGGAGATTGGGACGAGGGAAACAAACCCTAGCTAGGGAGAGGTGTACTTAGTTGGTACATTTGGTTCGACTACTGGTTCCC] [-] EMBL AU166251 [ tttttGAAACTACAAAGCATCTTCGAATTATCATGCAACCACAACTAGAGCCACAACCGTACATATATGGATACTAGCTACATGCAATCAAGCGTACGTAATAAGTGTATAACCCATGGCTTGCAAGCTTGCTATGTATATACGTACAGGACATGGGTAGAGCTGGGTAAGCTGCATCTAGCTCGATCATGGCTGAGCTTGTTCGCTCCCAATGTCATGGCCACTCCCCGGCATGTTCCCCGGGCTGCTCCAGCTGTCGTACTCCGGCCGCGGTATCG GTGGTGGTTGTCGATGGACGTCCCCTCCGCCGTCGTCGTCTTCACCACGCCGTGCGCCAG AGCGCCTCCTCCCCCGGCGCCGTGCGAGAAGTGACGGCGCCGAA GTGTGNGCCATGA CCATTGCGAGGATGAGAAGAGGGA GAAGCTTCATGGTGAAAGGGA GAAATTGGGGGA TCTGGGAAGA AGAATGAAGTCAATGTGAAATGACAC TTTGGAGATTGGGA GAGGG AACAAACCCTAGCAAGGGAGAGGTGTACTTTGTTGGTA ATTTGGTTTGACTAAT ] [-] EMBL AU031285 [ ACGTCCCTTCCGCCGTCGTCNTCTTCACCACGCCGTGCGCCAGCAGCGCCTCNTCCCCCGGCGCCGTGCGAGAANTGNCGGCGCCGAAGGCGTTGGCCATGA CCATTGCGAGGATGAGAAGAGGGA GAAGCTTCATGGTGAAAGGGA GAAATTGGGGGA TCTGGGAAGA AGAATGAAGTCAATGTGAAATGACAC TTTGGAGATTGGGA GAGGG AACAAACCCTAGCAAGGGAGAGGTGTACTTTGTTGGTA ATTTGGTTTGACTAAT ] consensusID : consensus_10692#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 600 fasta sequence [GGGAATAGCTGCGGTCGTCTGTATTGAGTTTGATTGAGAAAACAAGAACTCTCCCTTCATGTAGGGACGTATAAATTTTATTCAGTATTTAATTAATTAACATTAGTACACGTGATGAGGTTAAATACAGTTAAACACTTTTACATGAGCAATACAAATATACAATCACTGTAGAAACTACAAAGCATCTTCGAATTATCATGCAACCACAACTAGAGCCACAACCGTACATATATGGATACTAGCTACATGCAATCAAGCGTACGTAATAAGTGTATAACCCATGGCTTGCAAGCTTGCTATGTATATACGTACAGGACATGGGTAGAGCTGGGTAAGCTGCATCTAGCTCGATCATGGCTGAGCTTGTTCGCTCCCAATGTCATGGCCACTCCCCGGCATGTTCCCCGGGCTGCTCCAGCTGTCGTACTCCGGCCGCGGTATCGCGTGGTGGTCGTCGATGGACGTCCCCTCCGCCGTCGTCGTCTACACCACGCCGTGCGCCAGCGGCGCCTCCTCCCCCGGCGCCGAGCGAGAAGTGACGGCGCCGAAGGCGTTGGCCATGACCATTGCGAGGATGAGAAGAGGGAGAAGCTTCAT] [+] EMBL CB967485 [GGGAATAGCTGCGGTCGTCTGTATTGAGTTTGATTGAGAAAACAAGAACTCTCCCTTCATGTAGGGACGTATAAATTTTATTCAGTATTTAATTAATTAACATTAGTACACGTGATGAGGTTAAATACAGTTAAACACTTTTACATGAGCAATACAAATATACAATCACTGTAGAAACTACAAAGCATCTTCGAATTATCATGCAACCACAACTAGAGCCACAACCGTACATATATGGATACTAGCTACATGCAATCAAGCGTACGTAATAAGTGTATAACCCATGGCTTGCAAGCTTGCTATGTATATACGTACAGGACATGGGTAGAGCTGGGTAAGCTGCATCTAGCTCGATCATGGCTGAGCTTGTTCGCTCCCAATGTCATGGCCACTCCCCGGCATGTTCCCCGGGCTGCTCCAGCTGTCGTACTCCGGCCGCGGTATCGCGTGGTGGTCGTCGATGGACGTCCCCTCCGCCGTCGTCGTCTACACCACGCCGTGCGCCAGCGGCGCCTCCTCCCCCGGCGCCGAGCGAGAAGTGACGGCGCCGAAGGCGTTGGCCATGACCATTGCGAGGATGAGAAGAGGGAGAAGCTTCAT] [-] EMBL CA754831 [ CTTCGAATTATCATGCAACCACAACTAGAGCCACAACCGTACATATATGGATACTAGCTACATGCAATCAAGCGTACGTAATAAGTGTATAACCCATGGCTTGCAAGCTTGCTATGTATATACGTACAGGACATGGGTAGAGCTGGGTAAGCTGCATCTAGCTCGATCATGGCTGAGCTTGTTCGCTCCCAATGTCAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10692#0 --------TTTTTTTTTTTTTTTTTTTTNTTTTTTGAGAAAACAAGAACTCTCCCTTCAT 52 consensus_10692#1 GGGAATAGCTGCGGTCGTCTGTATTGAGTTTGATTGAGAAAACAAGAACTCTCCCTTCAT 60 * * * * * ** ** *************************** consensus_10692#0 GTAGGGACGTATAAATTTTATTCAGTATTTAATTAATTAACATTAGTACACGTGATGAGG 112 consensus_10692#1 GTAGGGACGTATAAATTTTATTCAGTATTTAATTAATTAACATTAGTACACGTGATGAGG 120 ************************************************************ consensus_10692#0 TTAAATACAGTTAAACACTTTTACATGAGCAATACAAATATACAATCACTGTAGAAACTA 172 consensus_10692#1 TTAAATACAGTTAAACACTTTTACATGAGCAATACAAATATACAATCACTGTAGAAACTA 180 ************************************************************ consensus_10692#0 CAAAGCATCTTCGAATTATCATGCAACCACAACTAGAGCCACAACCGTACATATATGGAT 232 consensus_10692#1 CAAAGCATCTTCGAATTATCATGCAACCACAACTAGAGCCACAACCGTACATATATGGAT 240 ************************************************************ consensus_10692#0 ACTAGCTACATGCAATCAAGCGTACGTAATAAGTGTATAACCCATGGCTTGCAAGCTTGC 292 consensus_10692#1 ACTAGCTACATGCAATCAAGCGTACGTAATAAGTGTATAACCCATGGCTTGCAAGCTTGC 300 ************************************************************ consensus_10692#0 TATGTATATACGTACAGGACATGGGTAGAGCTGGGTAAGCTGCATCTAGCTCGATCATGG 352 consensus_10692#1 TATGTATATACGTACAGGACATGGGTAGAGCTGGGTAAGCTGCATCTAGCTCGATCATGG 360 ************************************************************ consensus_10692#0 CTGAGCTTGTTCGCTCCCAATGTCATGGCCACTCCCCGGCATGTTCCCCGGGCTGCTCCA 412 consensus_10692#1 CTGAGCTTGTTCGCTCCCAATGTCATGGCCACTCCCCGGCATGTTCCCCGGGCTGCTCCA 420 ************************************************************ consensus_10692#0 GCTGTCGTACTCCGGCCGCGGTATCGCGTGGTGGTTGTCGATGGACGTCCCCTCCGCCGT 472 consensus_10692#1 GCTGTCGTACTCCGGCCGCGGTATCGCGTGGTGGTCGTCGATGGACGTCCCCTCCGCCGT 480 *********************************** ************************ consensus_10692#0 CGTCGTCTTCACCACGCCGTGCGCCAGCGGCGCCTCCTCCCCCGGCGCCGTGCGAGAAGT 532 consensus_10692#1 CGTCGTCTACACCACGCCGTGCGCCAGCGGCGCCTCCTCCCCCGGCGCCGAGCGAGAAGT 540 ******** ***************************************** ********* consensus_10692#0 GACGGCGCCGAAGGCGTTGGCCATGACCATTGCGAGGATGAGAAGAGGGAGAAGCTTCAT 592 consensus_10692#1 GACGGCGCCGAAGGCGTTGGCCATGACCATTGCGAGGATGAGAAGAGGGAGAAGCTTCAT 600 ************************************************************ consensus_10692#0 GGTGAAAGGGAGAAATTGGGGGATCTGGGAAGAAGAATGAAGTCAATGTGAAATGACACT 652 consensus_10692#1 ------------------------------------------------------------ consensus_10692#0 TTGGAGATTGGGAGAGGGAACAAACCCTAGCTAGGGAGAGGTGTACTTAGTTGGTAATTT 712 consensus_10692#1 ------------------------------------------------------------ consensus_10692#0 GGTTTGACTAATGGTTCCC 731 consensus_10692#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||