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Oryza sativa
cluster # 10708 cluster # 10708       Sequences # 8       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10708#0 length = 1384 sequences # 3  
consensus_10708#1 length = 1236 sequences # 4  
consensus_10708#2 length = 728 sequences # 1  

consensusID : consensus_10708#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1384
fasta sequence
                              [TTGATGCTTCTAACAGTGAGGATGATCTGAAGGGAGAAAAAAATGGTATGAATTGGTGATCTTTGATGACTGATGATTCTGCAGTTTCAGCTATTGTCGCTGACTGTGAATATTGCTTAAAAGTCAGCCAGTTCAGTTGAAATGGTGTTGTATGAGCTTCTCCTAAAAGGAGAAGTTAACTCAATAAGAGGCTCAGGTTAATGGCAACTCTTGGATAAAAGCCTCTTTTAACACACCATGAGTAACAGCAGCTGGTTAAATCTGACTCACTGATTAGAAACCAAATTTTGCAGCAGAAAGCTGGTTAATTGTCAGGCAATGCAGTAATCCGTGCTTTGCCAATTGTGATATTGAGCTCAATTTGATCGGATTGGTTATATATTTATATTGATACTTCTCAATTCTCACAGTGAGGATGATATGAATGAAAACTTTGCTAGTAAGAATTGGTAATCTTGGACTGATGATTCTGCAGTTTCAGCTATTGTTGACTGTAAATACTGATGTAGAAGTGTTAGCCAGTTCAACTGAAATGGTGCTATATGAGTTTCTCATGCAAGGTGAAGCTAACTCAACGAGAGGCTCAGGATAATGGCAAATCTTGGATAAACCTGAGTAACAGCAGCTGGCTAATTTGACTGGCGCTAACCAGAAACCAAATTTTGGAGCAGAATTTTTTGATGCAAATGTTGGCAGAGCCATCATG-TTGTAAACAGCAAGAGCAAGCTACAACAGAGCTCAGAATAACAGTAACAAACAGCACTGCCTCCATTTGGGGCATGCACAAGTTCTCTATTGACAGAGCCATGTCAGATATATACAAGCTGGCTTTGATATGCTTGAAGATAGGACGCATGTAACCACTAAATAAGTTCTACAACACAACCAGGAGGTTTGTGTCTCCACAACGGTTCAGGCATTTCCAAGAGCTTGAGTCTAAGCATGGAAATGGAGAACTTGGGGGCATAGCTTAATCAGAACAGAGCATTGGCTGAAGGCTGTCGACGAAGCAGCGTTGCGAGTCATTTTATGTGGGAATCATAAATACTGAAGATGACATCCGGAACAATCAGAGGCAGCTTGTTTATGTACATGAACAGCCTTCTGAGGTTCTCTCTTGACACTGTCTCCAAGTCAACCACATCTTGGTCCTCAACA-TAGATCCAT-AAGTCA-CCAGGGTC-AGT-CTTCTTC-AAGTTGTCACGGCAGAATGGACAAGACTGTGATCTTGAATTCCTGCAATAACACAATCCTTTTGTTCAAGCATTGTTTTTTGAACAGATATGTATGGTAGCTGTATGGCAACTCCAGAGTACAAGGACGTGATCCAAGTTTTGCTAACCCAAAAGATATGCATCGGTTGTAAGAAGCCAAGAATAAAGATAAA]

[+] EMBL AK110769             [TTGATGCTTCTAACAGTGAGGATGATCTGAAGGGAGAAAAAAATGGTATGAATTGGTGATCTTTGATGACTGATGATTCTGCAGTTTCAGCTATTGTCGCTGACTGTGAATATTGCTTAAAAGTCAGCCAGTTCAGTTGAAATGGTGTTGTATGAGCTTCTCCTAAAAGGAGAAGTTAACTCAATAAGAGGCTCAGGTTAATGGCAACTCTTGGATAAAAGCCTCTTTTAACACACCATGAGTAACAGCAGCTGGTTAAATCTGACTCACTGATTAGAAACCAAATTTTGCAGCAGAAAGCTGGTTAATTGTCAGGCAATGCAGTAATCCGTGCTTTGCCAATTGTGATATTGAGCTCAATTTGATCGGATTGGTTATATATTTATATTGATACTTCTCAATTCTCACAGTGAGGATGATATGAATGAAAACTTTGCTAGTAAGAATTGGTAATCTTGGACTGATGATTCTGCAGTTTCAGCTATTGTTGACTGTAAATACTGATGTAGAAGTGTTAGCCAGTTCAACTGAAATGGTGCTATATGAGTTTCTCATGCAAGGTGAAGCTAACTCAACGAGAGGCTCAGGATAATGGCAAATCTTGGATAAACCTGAGTAACAGCAGCTGGCTAATTTGACTGGCGCTAACCAGAAACCAAATTTTGGAGCAGAATCACTTGATGCAAATGTTGGCAGAGCCATCATGTTTGTAAACAGCAAGAGCAAGCTACAACAGAGCTCAGAATAACAGTAACAAACAGCACTGCCTCCATTTGGGGCATGCACAAGTTCTCTATTGACAGAGCCATGTCAGATATATACAAGCTGGCTTTGATATGCTTGAAGATAGGACGCATGTAACCACTAAATAAGTTCTACAACACGACCAGGAGGTTTGTGTCTCCACAACGGTTCAGGCATTTCCAAGAGCTTGAGTCTAAGCATGGAAATGGAGAACTTGGGGGCATAGCTTAATCAGAACAGAGCATTGGCTGAAGGCCGTCGACGAAGCAGCGTTGCGAGTCATTTTATGTGGGAATCATAAATACTGAAGATGACATCCGGAACAATCAGAGGCAGCTTGTTTATGTACATGAACAGCCTTCTGAGGTTCTCTCTTGACACTGTCTCCAAGTCAACCACATCTTGGTCCTCAACA TAGATCCAT AAGTCA CCAGGGTC AGT CTTCTTC AAGTTGTCACGGCAGAATGGACAAGACTGTGATCTTGAATTCCTGCAATAACACAATCCTTTTGTTCAAGCATTGTTTTTTGAACAGATATGTATGGTAGCTGTATGGCAACTCCAGAGTACAAGGACGTGATCCAAGTTTTGCTAACCCAAAAGATATGCATCGGTTGTAAGAAGCCAAGAATAAAGATAAA]
[-] EMBL BI801648             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TTTTTGATGCAAATG TGGCAGAGCCATCATG TTGTAAACAGCAAGAGCAAGCTACAACAGAGCTCAGAATAACAGTAACAAACAGCACTGCCTCCATTTGGGGCATGCACAAGTTCTCTATTGACAGAGCCATGTCAGATATATACAAGCTGGCTTTGATATGCTTGAAGATAGGACGCATGTAACCACTAAATAAGTTCTACAACACAACCAGGAGGTTTGTGTCTCCACAACGGTTCAGGCATTTCCAAGAGCTTGAGTCTAAGCATGGAAATGGAGAACTTGGGGGCATAGCTTAATCAGAACAGAGCATTGGCTGAAGGCTGTCGACGAAGCAGCGTTGCGAGTCATTTTATGTGGGAATCATAAATACTGAAGATGACATCCGGAACAATCAGAGGCAGCTTGTTTATGTACATGAACAGCCTTCTGAGGTTCTCTCTTGACACTGTCTCCATGTCAACCACATCTTGGTCCTCAACATTAGATCCATAAAGTCACCCAGGGTCAAGTCCTTTTTCAAAGTTtt                                                                                                                                                                                          ]
[-] EMBL BM419418             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TTTTTGATGCAAATGTTGGCAGAGCCATCATG TTGTAAACAGCAAGAGCAAGCTACAACAGAGCTCAGAATAACAGTAACAAACAGCACTG CTCCA TTGGGGCATGCACAAGTTCTCTATTGACAGAGCCATGTCAGATATATACAAGCTGGCTTTGATATGCTTGAAGATAGGACGCATGTAACCACTAAATAAGTTCTACAACACAACCAGGAGGTTTGTGTCTCCACAACGGTTCAGGCATTTCCAAGAGCTTGAGTCTAAGCATGGAAATGGAGAACTTGGGGGCATAGCTTAATCAGAACAGAGCA TGGCTGAAGGCTGTCGACGAAGCAGCGTTGCGAGTCATTTTATGTGGGAATCATAAATACTGAAGATGACATC                                                                                                                                                                                                                                                                                                                                         ]


>consensus_10708#0 TTGATGCTTCTAACAGTGAGGATGATCTGAAGGGAGAAAAAAATGGTATGAATTGGTGAT CTTTGATGACTGATGATTCTGCAGTTTCAGCTATTGTCGCTGACTGTGAATATTGCTTAA AAGTCAGCCAGTTCAGTTGAAATGGTGTTGTATGAGCTTCTCCTAAAAGGAGAAGTTAAC TCAATAAGAGGCTCAGGTTAATGGCAACTCTTGGATAAAAGCCTCTTTTAACACACCATG AGTAACAGCAGCTGGTTAAATCTGACTCACTGATTAGAAACCAAATTTTGCAGCAGAAAG CTGGTTAATTGTCAGGCAATGCAGTAATCCGTGCTTTGCCAATTGTGATATTGAGCTCAA TTTGATCGGATTGGTTATATATTTATATTGATACTTCTCAATTCTCACAGTGAGGATGAT ATGAATGAAAACTTTGCTAGTAAGAATTGGTAATCTTGGACTGATGATTCTGCAGTTTCA GCTATTGTTGACTGTAAATACTGATGTAGAAGTGTTAGCCAGTTCAACTGAAATGGTGCT ATATGAGTTTCTCATGCAAGGTGAAGCTAACTCAACGAGAGGCTCAGGATAATGGCAAAT CTTGGATAAACCTGAGTAACAGCAGCTGGCTAATTTGACTGGCGCTAACCAGAAACCAAA TTTTGGAGCAGAATTTTTTGATGCAAATGTTGGCAGAGCCATCATGTTGTAAACAGCAAG AGCAAGCTACAACAGAGCTCAGAATAACAGTAACAAACAGCACTGCCTCCATTTGGGGCA TGCACAAGTTCTCTATTGACAGAGCCATGTCAGATATATACAAGCTGGCTTTGATATGCT TGAAGATAGGACGCATGTAACCACTAAATAAGTTCTACAACACAACCAGGAGGTTTGTGT CTCCACAACGGTTCAGGCATTTCCAAGAGCTTGAGTCTAAGCATGGAAATGGAGAACTTG GGGGCATAGCTTAATCAGAACAGAGCATTGGCTGAAGGCTGTCGACGAAGCAGCGTTGCG AGTCATTTTATGTGGGAATCATAAATACTGAAGATGACATCCGGAACAATCAGAGGCAGC TTGTTTATGTACATGAACAGCCTTCTGAGGTTCTCTCTTGACACTGTCTCCAAGTCAACC ACATCTTGGTCCTCAACATAGATCCATAAGTCACCAGGGTCAGTCTTCTTCAAGTTGTCA CGGCAGAATGGACAAGACTGTGATCTTGAATTCCTGCAATAACACAATCCTTTTGTTCAA GCATTGTTTTTTGAACAGATATGTATGGTAGCTGTATGGCAACTCCAGAGTACAAGGACG TGATCCAAGTTTTGCTAACCCAAAAGATATGCATCGGTTGTAAGAAGCCAAGAATAAAGA TAAA



consensusID : consensus_10708#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1236
fasta sequence
                              [TTTTTTTTTTTTTTAACAGTAACAAACAGCACTGCCTCCATTTGGGGCATGCACAAGTTCTCTATTGACAGAGCCATGTCAGATATATACAAGCTGGCTTTGATATGCTTGAAGATAGGACGCATGTAACCACTAAATAAGTTCTACAACACAACCAGGAGGTTTGTGTCTCCACAACGGTTCAGGCATTTCCAAGAGCTTGAGTCTAAGCATGGAAATGGAGAACTTGGGGGCATAGCTTAATCAAAACAGAGCATTGGCTGAAGGCTGTCGACAAAACAGCGTTGCGAGTCATTTTATGTGGGAATCATAAATACTGAAGATGACATCCGGAACAATCAGAGGCAGCTTGTTTATGTACATGAACAGCCTTCTGAGGTTCTCTCTTGACACTGTCTCCAAGTCAACCACATCTTGGTCCTCAACATAGATCCATAAGTCACCAGGGTCAGTCTTCTTCAAGTTGTCACGGCAGAATGGACAAGACTGTGATCTTGAATTCCAGTCCTGGTAGCATCTGAGGCACATATTATGGGTGCAGTTGGGCAACACCACTTTGCTGTTCATCTCCATGCAAATCCCGCACTCCTCTTCTCTCTCGGCATCAATTTCGGATAAGATGTTTCTTTCATCCTCATCTCTCCTTCTGTACCTCTCCATGCACACGGCCTTCTGCTTTTTGTCCTCCGTATCAGTAATCCCCCTTTGCAGTTGCAGCAGAGAAGGAAATATCACAGCGTAGAATTCTTTGATGCTGGCTTTCCTCTCATGGGTAGACATTGTCGTCGTCCCGTCGACATAAACCTTGTAGACGAGGATCCTCAGCAAGCCGAGAGCCCCGGCGAGGCTGCAGTCAGTCCACTGCACCAGGAAGAGGAATATATGCGCCGCGGGGCTATACGAGAGCCGCATCTGCAGGCACGCGCCATCGTACTCCCGGGGAAATTCGGAGGCCAGGGTGTTGGCGTGCTGGATGTCAGCTTCGAGCACCTTGAACGAGTCCTTGTACGCCTTCCGCATCCTCCACCACCGCCACCACCGCCACCGCCTCCACCGCCGCCGCCGACGCCGACGCCGACGCCCTCCTTCTCATCCAACCCCGGGGCAACCCCCCCGCCGCGGCCGGAACCACCCACCCTTGCGCTCGCTCGCTCGCGCGCGCTCAGATTCCTCGTCTCCTCTCCCTTCCTTGCCCTCGCTGGGGGGGTTCGCGATCGCGAGCGTGCGCCGTGCGGT]

[+] EMBL CA763372             [TTTTTTTTTTTTTTAACAGTAACAAACAGCACTGCCTCCATTTGGGGCATGCACAAGTTCTCTATTGACAGAGCCATGTCAGATATATACAAGCTGGCTTTGATATGCTTGAAGATAGGACGCATGTAACCACTAAATAAGTTCTACAACACAACCAGGAGGTTTGTGTCTCCACAACGGTTCAGGCATTTCCAAGAGCTTGAGTCTAAGCATGGAAATGGAGAACTTGGGGGCATAGCTTAATCAAAACAGAGCATTGGCTGAAGGCTGTCGACAAAACAGCGTTGCGAGTCATTTTATGTGGGAATCATAAATACTGAAGATGACATCCGGAACAATCAGAGGCAGCTTGTTTATGTACATGAACAGCCTTCTGAGGTTCTCTCTTGACACTGTCTCCATGTCAACCACATCTTGGTCCTCAACATAGATCCATAAGTCACCAGGGTCAGTCTTCTTCAAGTTGTCACGGCAGAATGGACAGGACTGTGATCTTGAATTCCAGTCCTGGTAGCATCTGAGGCACATATTATGGGTGCAGTTGGGCAACACCACTTTGCTGTTCATCTCCATGCAAATCCCGCACTCCTCTTCTCTCTCGGCATCAATTTCGGATAAGATGTTTCTTTCATCCTCATCTCTCCTTCTGTACCTCc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CF303598             [                                                                                                                                                                                                                                                                                         GCGTTGCGAGTCATTTTATGTGGGAATCATAAATACTGAAGATGACATCCGGAACAATCAGAGGCAGCTTGTTTATGTACATGAACAGCCTTCTGAGGTTCTCTCTTGACACTGTCTCCAAGTCAACCACATCTTGGTCCTCAACATAGATCCATAAGTCACCAGGGTCAGTCTTCTTCAAGTTGTCACGGCAGAATGGACAAGACTGTGATCTTGAATTCCAGTCCTGGTAGCATCTGAGGCACATATTATGGGTGCAGTTGGGCAACACCACTTTGCTGTTCATCTCCATGCAAATCCCGCACTCCTCTTCTCTCTCGGCATCAATTTCGGATAAGATGTTTCTTTCATCCTCATCTCTCCTTCTGTACCTCTCCATGCACACGGCCTTCTGCTTTTTGTCCTCCGTATCAGTAATCCCCCTTTGCAGTTGCAGCAGAGAAGGAAATATCACAGCGTAGAATTCTTTGATGCTGGCTTTCCTCTCATGGGTAGACATTGTCGTCGTCCCGTCGACATAAACCTTGTAGACGA                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CF303737             [                                                                                                                                                                                                                                                                                              GCGAGTCATTTTATGTGGGAATCATAAATACTGAAGATGACATCCGGAACAATCAGAGGCAGCTTGTTTATGTACATGAACAGCCTTCTGAGGTTCTCTCTTGACACTGTCTCCAAGTCAACCACATCTTGGTCCTCAACATAGATCCATAAGTCACCAGGGTCAGTCTTCTTCAAGTTGTCACGGCAGAATGGACAAGACTGTGATCTTGAATTCCAGTCCTGGTAGCATCTGAGGCACATATTATGGGTGCAGTTGGGCAACACCACTTTGCTGTTCATCTCCATGCAAATCCCGCACTCCTCTTCTCTCTCGGCATCAATTTCGGATAAGATGTTTCTTTCATCCTCATCTCTCCTTCTGTACCTCTCCATGCACACGGCCTTCTGCTTTTTGTCCTCCGTATCAGTAATCCCCCTTTGCAGTTGCAGCAGAGAAGGAAATATCACAGCGTAGAATTCTTTGATGCTGGCTTTCCTCTCATGGGTAGACATTGTCGTCGTCCCGTCGACATAAACCTTGTAGACGA                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CB653140             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GCATCTGAGGCACATATTATGGGTGCAGTTGGGCAACACCACTTTGCTGTTCATCTCCATGCAAATCCCGCACTCCTCTTCTCTCTCGGCATCAATTTCGGATAAGATGTTTCTTTCATCCTCATCTCTCCTTCTGTACCTCTCCATGCACACGGCCTTCTGCTTTTTGTCCTCCGTATCAGTAATCCCCCTTTGCAGTTGCAGCAGAGAAGGAAATATCACAGCGTAGAATTCTTTGATGCTGGCTTTCCTCTCATGGGTAGACATTGTCGTCGTCCCGTCGACATAAACCTTGTAGACGAGGATCCTCAGCAAGCCGAGAGCCCCGGCGAGGCTGCAGTCAGTCCACTGCACCAGGAAGAGGAATATATGCGCCGCGGGGCTATACGAGAGCCGCATCTGCAGGCACGCGCCATCGTACTCCCGGGGAAATTCGGAGGCCAGGGTGTTGGCGTGCTGGATGTCAGCTTCGAGCACCTTGAACGAGTCCTTGTACGCCTTCCGCATCCTCCACCACCGCCACCACCGCCACCGCCTCCACCGCCGCCGCCGACGCCGACGCCGACGCCCTCCTTCTCATCCAACCCCGGGGCAACCCCCCCGCCGCGGCCGGAACCACCCACCCTTGCGCTCGCTCGCTCGCGCGCGCTCAGATTCCTCGTCTCCTCTCCCTTCCTTGCCCTCGCTGGGGGGGTTCGCGATCGCGAGCGTGCGCCGTGCGGT]


>consensus_10708#1 TTTTTTTTTTTTTTAACAGTAACAAACAGCACTGCCTCCATTTGGGGCATGCACAAGTTC TCTATTGACAGAGCCATGTCAGATATATACAAGCTGGCTTTGATATGCTTGAAGATAGGA CGCATGTAACCACTAAATAAGTTCTACAACACAACCAGGAGGTTTGTGTCTCCACAACGG TTCAGGCATTTCCAAGAGCTTGAGTCTAAGCATGGAAATGGAGAACTTGGGGGCATAGCT TAATCAAAACAGAGCATTGGCTGAAGGCTGTCGACAAAACAGCGTTGCGAGTCATTTTAT GTGGGAATCATAAATACTGAAGATGACATCCGGAACAATCAGAGGCAGCTTGTTTATGTA CATGAACAGCCTTCTGAGGTTCTCTCTTGACACTGTCTCCAAGTCAACCACATCTTGGTC CTCAACATAGATCCATAAGTCACCAGGGTCAGTCTTCTTCAAGTTGTCACGGCAGAATGG ACAAGACTGTGATCTTGAATTCCAGTCCTGGTAGCATCTGAGGCACATATTATGGGTGCA GTTGGGCAACACCACTTTGCTGTTCATCTCCATGCAAATCCCGCACTCCTCTTCTCTCTC GGCATCAATTTCGGATAAGATGTTTCTTTCATCCTCATCTCTCCTTCTGTACCTCTCCAT GCACACGGCCTTCTGCTTTTTGTCCTCCGTATCAGTAATCCCCCTTTGCAGTTGCAGCAG AGAAGGAAATATCACAGCGTAGAATTCTTTGATGCTGGCTTTCCTCTCATGGGTAGACAT TGTCGTCGTCCCGTCGACATAAACCTTGTAGACGAGGATCCTCAGCAAGCCGAGAGCCCC GGCGAGGCTGCAGTCAGTCCACTGCACCAGGAAGAGGAATATATGCGCCGCGGGGCTATA CGAGAGCCGCATCTGCAGGCACGCGCCATCGTACTCCCGGGGAAATTCGGAGGCCAGGGT GTTGGCGTGCTGGATGTCAGCTTCGAGCACCTTGAACGAGTCCTTGTACGCCTTCCGCAT CCTCCACCACCGCCACCACCGCCACCGCCTCCACCGCCGCCGCCGACGCCGACGCCGACG CCCTCCTTCTCATCCAACCCCGGGGCAACCCCCCCGCCGCGGCCGGAACCACCCACCCTT GCGCTCGCTCGCTCGCGCGCGCTCAGATTCCTCGTCTCCTCTCCCTTCCTTGCCCTCGCT GGGGGGGTTCGCGATCGCGAGCGTGCGCCGTGCGGT



consensusID : consensus_10708#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 728
fasta sequence
                              [CACTTGATGCAAATGTTGGCCGTATAAGGATGTTTGTAAACAGCAAGAGCAAGCTACAACAGAGCTCAGAATAACAGTAACAAACAGCACTGCCTCCATTTGGGGCATGCACAAGTTCTCTATTGACAGAGCCATGTCAGATATATACAAGCTGGCTTTGATATGCTTGAAGATAGGACGCATGTAACCACTAAATAAGTTCTACAACACGACCAGGAGGTTTGTGTCTCCACAACGGTTCAGGCATTTCCAAGAGCTTGAGTCTAAGCATGGAAATGGAGAACTTGGGGGCATAGCTTAATCAGAACAGAGCATTGGCTGAAGGCCGTCGACGAAGCAGCGTTGCGAGTCATTTTATGTGGGAATCATAAATACTGAAGATGACATCCGGAACAATCAGAGGCAGCTTGTTTATGTACATGAACAGCCTTCTGAGGTTCTCTCTTGACACTGTCTCCAAGTCAACCACATCTTGGTCCTCAACATAGATCCATAAGTCACCAGGGTCAGTCTTCTTCAAGTTGTCACGGCAGAATGGACAAGACTGTGATCTTGAATTCCAGTCCTGGTAGCATCTGAGGCACATATTATGGGTGCAGTTGGGCAACACCACTTTGCTGTTCATCTCCATGCAAATCCCGCACTCCTCTTCTCTCTCGGGATCAATTTCGGATAAGATGTTTCTTTCATCCTCATCTCTCCTTCTGTACCTCTCCATGCACACGGCC]

[+] EMBL CB653141             [CACTTGATGCAAATGTTGGCCGTATAAGGATGTTTGTAAACAGCAAGAGCAAGCTACAACAGAGCTCAGAATAACAGTAACAAACAGCACTGCCTCCATTTGGGGCATGCACAAGTTCTCTATTGACAGAGCCATGTCAGATATATACAAGCTGGCTTTGATATGCTTGAAGATAGGACGCATGTAACCACTAAATAAGTTCTACAACACGACCAGGAGGTTTGTGTCTCCACAACGGTTCAGGCATTTCCAAGAGCTTGAGTCTAAGCATGGAAATGGAGAACTTGGGGGCATAGCTTAATCAGAACAGAGCATTGGCTGAAGGCCGTCGACGAAGCAGCGTTGCGAGTCATTTTATGTGGGAATCATAAATACTGAAGATGACATCCGGAACAATCAGAGGCAGCTTGTTTATGTACATGAACAGCCTTCTGAGGTTCTCTCTTGACACTGTCTCCAAGTCAACCACATCTTGGTCCTCAACATAGATCCATAAGTCACCAGGGTCAGTCTTCTTCAAGTTGTCACGGCAGAATGGACAAGACTGTGATCTTGAATTCCAGTCCTGGTAGCATCTGAGGCACATATTATGGGTGCAGTTGGGCAACACCACTTTGCTGTTCATCTCCATGCAAATCCCGCACTCCTCTTCTCTCTCGGGATCAATTTCGGATAAGATGTTTCTTTCATCCTCATCTCTCCTTCTGTACCTCTCCATGCACACGGCC]


>consensus_10708#2 CACTTGATGCAAATGTTGGCCGTATAAGGATGTTTGTAAACAGCAAGAGCAAGCTACAAC AGAGCTCAGAATAACAGTAACAAACAGCACTGCCTCCATTTGGGGCATGCACAAGTTCTC TATTGACAGAGCCATGTCAGATATATACAAGCTGGCTTTGATATGCTTGAAGATAGGACG CATGTAACCACTAAATAAGTTCTACAACACGACCAGGAGGTTTGTGTCTCCACAACGGTT CAGGCATTTCCAAGAGCTTGAGTCTAAGCATGGAAATGGAGAACTTGGGGGCATAGCTTA ATCAGAACAGAGCATTGGCTGAAGGCCGTCGACGAAGCAGCGTTGCGAGTCATTTTATGT GGGAATCATAAATACTGAAGATGACATCCGGAACAATCAGAGGCAGCTTGTTTATGTACA TGAACAGCCTTCTGAGGTTCTCTCTTGACACTGTCTCCAAGTCAACCACATCTTGGTCCT CAACATAGATCCATAAGTCACCAGGGTCAGTCTTCTTCAAGTTGTCACGGCAGAATGGAC AAGACTGTGATCTTGAATTCCAGTCCTGGTAGCATCTGAGGCACATATTATGGGTGCAGT TGGGCAACACCACTTTGCTGTTCATCTCCATGCAAATCCCGCACTCCTCTTCTCTCTCGG GATCAATTTCGGATAAGATGTTTCTTTCATCCTCATCTCTCCTTCTGTACCTCTCCATGC ACACGGCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10708#1      ----------------------------------------------------------TT 2
consensus_10708#2      CACTTGATGCAAATGTTGGCCGTATAAGGATGTTTGTAAACAGCAAGAGCAAGCTACAAC 60
consensus_10708#0      ------------------------------------------------------------
                                                                                   

consensus_10708#1      TTTTTTTTTTTTAACAGTAACAAACAGC--ACTGCCTCCATTTGGGGCATGCACAAGT-- 58
consensus_10708#2      AGAGCTCAGAATAACAGTAACAAACAGC--ACTGCCTCCATTTGGGGCATGCACAAGT-- 116
consensus_10708#0      -TTGATGCTTCTAACAGTGAGGATGATCTGAAGGGAGAAAAAAATGGTATGAATTGGTGA 59
                            *     ******* *  *  * *  *  *     *     ** *** *   **  

consensus_10708#1      TCTCTATTGACAGA-------GCCATGTCAGATATATACAAGCTGGCTTTGA-TAT-GCT 109
consensus_10708#2      TCTCTATTGACAGA-------GCCATGTCAGATATATACAAGCTGGCTTTGA-TAT-GCT 167
consensus_10708#0      TCTTTGATGACTGATGATTCTGCAGTTTCAGCTATTGTC--GCTGACTGTGAATATTGCT 117
                       *** *  **** **       **  * **** ***   *  **** ** *** *** ***

consensus_10708#1      TGAAGAT-----AGGACGCATGTAACCACTAAATAAGTTCTACAACACAACCAGGAGGTT 164
consensus_10708#2      TGAAGAT-----AGGACGCATGTAACCACTAAATAAGTTCTACAACACGACCAGGAGGTT 222
consensus_10708#0      TAAAAGTCAGCCAGTTCAGTTGAAATGGTGTTGTATGAGCTTCTCCTAAAAGGAGAAGTT 177
                       * **  *     **  *   ** **        ** *  ** *  *   *    ** ***

consensus_10708#1      TGTGTCTCCACAAC-GGTTCAGGCATTTCCAAGAGCTTGAGTCTAAGCATGGAAATGGAG 223
consensus_10708#2      TGTGTCTCCACAAC-GGTTCAGGCATTTCCAAGAGCTTGAGTCTAAGCATGGAAATGGAG 281
consensus_10708#0      ---AACTCAATAAGAGGCTCAGGTTAATGGCAACTCTTGGATAAAAGCCTCTTTTAACAC 234
                            *** * **  ** *****    *   *   ****  *  **** *        * 

consensus_10708#1      AACTTGGG-GGCATAGCTTAATCAAAACAGAG-CATTGGCTGAAGGCTG---TCGACA-- 276
consensus_10708#2      AACTTGGG-GGCATAGCTTAATCAGAACAGAG-CATTGGCTGAAGGCCG---TCGACG-- 334
consensus_10708#0      ACCATGAGTAACAGCAGCTGGTTAAATCTGACTCACTGATTAGAAACCAAATTTTGCAGC 294
                       * * ** *   **     *  * * * * **  ** **  *  *  *     *   *   

consensus_10708#1      AAACAGC--GTTGCGAGTCATTTTATGTGGGAATCATAAAT--ACTGAAGATGACATCCG 332
consensus_10708#2      AAGCAGC--GTTGCGAGTCATTTTATGTGGGAATCATAAAT--ACTGAAGATGACATCCG 390
consensus_10708#0      AGAAAGCTGGTTAATTGTCAGGCAATGCAGTAATCCGTGCTTTGCCAATTGTGATATTGA 354
                       *   ***  ***    ****    ***  * ****     *   *  *   *** **   

consensus_10708#1      GAACAATCAGAGGCAGCTTGTTTATGTACATGAACAGC--CTTCTGAGGTTCTCTCTTGA 390
consensus_10708#2      GAACAATCAGAGGCAGCTTGTTTATGTACATGAACAGC--CTTCTGAGGTTCTCTCTTGA 448
consensus_10708#0      GCTCAATTTGAT-CGGATTGGTTATATATTTATATTGATACTTCTCAATTCTCACAGTGA 413
                       *  ****  **  * * *** **** **  *  *  *   ***** *  *       ***

consensus_10708#1      CACTGTCTCCAAGTCAACCACATCTTGG------TCCTCAACATAGATCCATAAGTCACC 444
consensus_10708#2      CACTGTCTCCAAGTCAACCACATCTTGG------TCCTCAACATAGATCCATAAGTCACC 502
consensus_10708#0      GGATGATATGAATGAAAACTTTGCTAGTAAGAATTGGTAATCTTGGACTGATGATTCTGC 473
                          **     **   ** *    ** *       *  * * * * **   ** * **  *

consensus_10708#1      AGGGTCAGTCTTCTTCAAGT--------TGTCACGGCAGAATGGACAAG----ACTGTGA 492
consensus_10708#2      AGGGTCAGTCTTCTTCAAGT--------TGTCACGGCAGAATGGACAAG----ACTGTGA 550
consensus_10708#0      AGTTTCAGCTATTGTTGACTGTAAATACTGATGTAGAAGTGTTAGCCAGTTCAACTGAAA 533
                       **  ****   *  *  * *        **     * **  *   * **    ****  *

consensus_10708#1      TCTTGA-ATTCCAGTC-CTGGTAGCATCTGAGGCACATATTATGGGTGCAGTTGGGCAAC 550
consensus_10708#2      TCTTGA-ATTCCAGTC-CTGGTAGCATCTGAGGCACATATTATGGGTGCAGTTGGGCAAC 608
consensus_10708#0      TGGTGCTATATGAGTTTCTCATGCAAGGTGAAGCTAACTCAACGAGAGGCTCAGGATAAT 593
                       *  **  **   ***  **  *   *  *** **  *    * * * *     **  ** 

consensus_10708#1      ACCACTTTGCTGTTCATCTCCAT-----GCAAATCCCGCACTCCTCTT---CTCTCTCGG 602
consensus_10708#2      ACCACTTTGCTGTTCATCTCCAT-----GCAAATCCCGCACTCCTCTT---CTCTCTCGG 660
consensus_10708#0      GGCAAATCTTGGATAAACCTGAGTAACAGCAGCTGGCTAATTTGACTGGCGCTAACCAGA 653
                         **  *    * * * *   *      ***  *  *  * *   **    **  *  * 

consensus_10708#1      CATCAA-TTTCGGATAAGATGTTTCTTTCATCCTCAT--------CTCTCCTTCTGTACC 653
consensus_10708#2      GATCAA-TTTCGGATAAGATGTTTCTTTCATCCTCAT--------CTCTCCTTCTGTACC 711
consensus_10708#0      AACCAAATTTTGGAGCAGAATTTTTTGATGCAAATGTTGGCAGAGCCATCATGTTGTAAA 713
                        * *** *** ***  ***  *** *          *        *  ** *  ****  

consensus_10708#1      TCTCCAT-GCACACGGCCTTCTGCTTTTTGTCCTCCGTATCAGTAATCCCCCTTTGCAGT 712
consensus_10708#2      TCTCCAT-GCACACGGCC------------------------------------------ 728
consensus_10708#0      CAGCAAGAGCAAGCTACAACAGAGCTCAGAATAACAGTAACAAACAGCACTGCCTCCATT 773
                          * *  ***  *  *                                           

consensus_10708#1      TGCAGCAGAGAAGGA------AATATCACAGC---GTAGAATTCTTTGATGCTGGCTTTC 763
consensus_10708#2      ------------------------------------------------------------
consensus_10708#0      TGGGGCATGCACAAGTTCTCTATTGACAGAGCCATGTCAGATATATACAAGCTGGCTTTG 833
                                                                                   

consensus_10708#1      CTCTCATGGGTAGACATTGTCGTCGTCCCGTCGACATAAACCTTGTAG----ACGAGGA- 818
consensus_10708#2      ------------------------------------------------------------
consensus_10708#0      ATATGCTTGA-AGATAGGACGCATGTAACCACTAAATAAGTTCTACAACACAACCAGGAG 892
                                                                                   

consensus_10708#1      ---------TCCTCAGCAAGCCGAGAGCCCCGGCGAGGCTGCAGTCAGTCCACTGCACCA 869
consensus_10708#2      ------------------------------------------------------------
consensus_10708#0      GTTTGTGTCTCCACAACGGTTCAGGCATTTCCAAGAGCTTG-AGTCTAAGCATGGAAATG 951
                                                                                   

consensus_10708#1      GGAA-----GAGGAATA---TATGCGCCGCGGGGCTATA--CGAGAGCCGCATCTGCAGG 919
consensus_10708#2      ------------------------------------------------------------
consensus_10708#0      GAGAACTTGGGGGCATAGCTTAATCAGAACAGAGCATTGGCTGAAGGCTGTCGACGAAGC 1011
                                                                                   

consensus_10708#1      CACGCGCCATCGTACTCCCGGGGAAATTCGGAGGCCAGGGTGTTGGCGTGCTGGATGTCA 979
consensus_10708#2      ------------------------------------------------------------
consensus_10708#0      AGCGTTGCGAGTCATTTTATGTGGGAATCATAAATACTGAAGATGACATCCGGAA---CA 1068
                                                                                   

consensus_10708#1      GCTTCGAGCACCTTGAACGAGTCCTTGTAC-GCCTTCCGCA----TCCTCCACCACCGCC 1034
consensus_10708#2      ------------------------------------------------------------
consensus_10708#0      ATCAGAGGCAGCTTGTTTATGTACATGAACAGCCTTCTGAGGTTCTCTCTTGACACTGTC 1128
                                                                                   

consensus_10708#1      ACCACCGCCACCGCCTCC--ACCGCCGCCGCCGACGCCGACGCCGACGCCCTCCTTCTCA 1092
consensus_10708#2      ------------------------------------------------------------
consensus_10708#0      TCCAAGTCAACCACATCTTGGTCCTCAACATAGATCCATAAGTCACCAGGGTCAGTCTTC 1188
                                                                                   

consensus_10708#1      TCCAACCCCGGGGCAACCCCCCCGCCGCGGCCGGAACCACCCACCCTTGCGCTCGCTCGC 1152
consensus_10708#2      ------------------------------------------------------------
consensus_10708#0      TTCAAGTT-GTCACGGCAGAATGGACAAGACTGTGATCTTGAATTCCTGCAATAACACAA 1247
                                                                                   

consensus_10708#1      TCGCGCGCGCTCAGAT-TCCTCGTCTCCTCTCCCTTCCTTGCCCTCGCTGGGGGGGTTCG 1211
consensus_10708#2      ------------------------------------------------------------
consensus_10708#0      TC-CTTTTGTTCAAGCATTGTTTTTTGAACAGATATGTATGGTAGCTGTATGGCAACTCC 1306
                                                                                   

consensus_10708#1      CGATCGCGAGCGTGCGCCGTGCGGT----------------------------------- 1236
consensus_10708#2      ------------------------------------------------------------
consensus_10708#0      AGAGTACAAGGACGTGATCCAAGTTTTGCTAACCCAAAAGATATGCATCGGTTGTAAGAA 1366
                                                                                   

consensus_10708#1      ------------------
consensus_10708#2      ------------------
consensus_10708#0      GCCAAGAATAAAGATAAA 1384
                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)