These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10713#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2365 fasta sequence [CAGTCCCCTCCTCCCTCTCGTTCATTGCTCAGTATGTATCATCGAGAATGGTACGGATTCCCAATAAACTGATGTTGGGTGATCTAATAACTGAAGGCAAAATGAAGTAATATAATCGCATCAATTTGTAATGTTGTGGGGAGTTGATTTTGTTTTTGTTTTTCTGTACTGATGAGGTGTAGGCTAGCAGCGCCCGCCAACCGGCACTGAGGTAAGGAGTTCCACAACCACAGCACTCAGATGCAAATAATGGGCATGCCTCTGTCTAAGCTACTAAGCAGAGAAGCACACTGCAAATAAGAGCTGAGTGAGCTGGGAGCTGCCAATCTCTGTTTTCTCTTTTTCTTGGATTGCAATTTTTGATTTTAGATTGGATATTTGAGAGAATGCATAGGAAAGGGAAAGGAAAAGGGAAAGGGATGCCTTTACATTGTACTTATCTTTCCTTACGTTACCTATCTCAGATGTGGTCATAGTAATATACTTTTTTCTTTGTGCCACTTATCTTTCCTTTCTATGCTCCACTGATATATCAGCTGGTCCATGTGCCATTTGGTGATTGCTGCTTACATAGTTATTTTTATTTATCTCCGTACGCTATGTGATGTTATATTCCCTTCTCGATATATGTTCAGCCATTCAATCAGTTTTGATTAGTTAATGTTCATGCATCAGATTTGTTAATACAAAATGTTCTCTGATCTGGTATTCAGCTTGGCTACCAGTACATGTTACAAGTTCAATCTTCCACAAGCAATTGAGAAAGGTTGCAGGTGAGAGGCAAGCAGAAGCATGACAGGAATATTGATTTACTTACATGATAACCGTTGTGCCATTAGCCTTGGACAATCGGAGGTCATTGAGATTAAACTCTGCTTGCTTCGCATCCTCCATATGTTCAGCATGGATGGTGACTTTGGTCCATTGCTTGAGCTTATCAAGTTACACAGAATGTATGGGCTTTTGTTGGTCATGGACGTTGTTAGTGTTTTTCTCTCCCTTGAAATACATATTTTTTTCCTGACTATTGCCTTGGACAGTTGGAGATCATTGTGATGTTGGTGTAATTGGGCTTACTAAGTGCTCTGGTACTCATGGGCTTCTTCCCTGTTTTGACACCTTTTTGTTAGTATCAATTCAGAGAGAGACAATTTGCGTACATCCCTTGGATTTCATGATCTGGACAATCTTGGTTTGCAGCCCAAAGTAAAGGGCAAGTGTACGAATTTAGCCACAAAAGCGACGCCAACGAGGATCGCCATCGACGGTGACCGCTGCTCCATCGATCCTTCTTCCCCCGTTTGCTACTCTCACTTCACAGCCACAATCATGTCTTCCGCAGTGTTCGCATCAATGAGGCTGAATGCAACAAATCAAAGCTACTTGCCTGTGCCAATCACACTTGCGACAGCATATAAGATGCAGCATGGAGATAATCTGAAGTTAAAAACTTCCCATGGCTTGAAGATAAAGATCAAAATCAAGGAAGTAGCTAGCACACTGTACATGACGACAGGATGGAGATAATCTGAAGTTAGAAACTGGAGAAACGATTCTTTTCAGGATGCCATCAAGGTCTAAAGCGTGTGTTATGATACTGAACAGACAAGGCCTTATTAGATGTCCAGTGAAGACCCCATCCAACAGCTCATCAGCTAACAAAAGGTCCCCTGATCCATCAGGTCAATTAACCAGAGCAAGCACATTTGACCATGCATCTTCTAGCAAAAGCGTTCCATTTCTGAGGAATGGAACAGGCAGTAACAAAAGAAAACCTAGCAGACACCTCCTTCTGCCACCAGATTAAGCTCACAGCTGAATTGAAGAGTTACATCAAAGAGATTGCAGATTTTCTAGAAGAATCAAACAAGTTCTATGTCGTGCGTATGAACAGAACATTCATGGAACAGGACAGAGTGTACTTTGCGACCGAGTTTTCAAAGAAATACATTGTGAACTTGGTTCGAGGCAAGACAGCAAACATTAGAGTGCAGATTGCAGGTCGACCCTCAACAACTTAACATCAGGGTGGTTAGCTTTGCAGCAGCCAACAGCATCAACTTACACAATCTGCATCTTCCACTTTT-TAGG--ACAAGTCACCTCACGCTCACCATAGATGCTCTGTGAAAGTTACCTGCATCTTCAGTAGTCGCTGCTATTATCTACACTGGAACAACTACTATAAT--TCTCTATTATCCTTTGCTTGCGGTCTATCTAACTTCACTTGCTCTGTAAGCACGTGACCTATAACTGCTTATCATTGTCCTCAGCTCCTTTTGTTATCCATAAGCTGAGTGAACAATTAACCACTTTATGTACAAAC-AGCTGGCTTGTTATACTACAGGTACTATGGTACTATTTGTTG] [+] EMBL AK102626 [CAGTCCCCTCCTCCCTCTCGTTCATTGCTCAGTATGTATCATCGAGAATGGTACGGATTCCCAATAAACTGATGTTGGGTGATCTAATAACTGAAGGCAAAATGAAGTAATATAATCGCATCAATTTGTAATGTTGTGGGGAGTTGATTTTGTTTTTGTTTTTCTGTACTGATGAGGTGTAGGCTAGCAGCGCCCGCCAACCGGCACTGAGGTAAGGAGTTCCACAACCACAGCACTCAGATGCAAATAATGGGCATGCCTCTGTCTAAGCTACTAAGCAGAGAAGCACACTGCAAATAAGAGCTGAGTGAGCTGGGAGCTGCCAATCTCTGTTTTCTCTTTTTCTTGGATTGCAATTTTTGATTTTAGATTGGATATTTGAGAGAATGCATAGGAAAGGGAAAGGAAAAGGGAAAGGGATGCCTTTACATTGTACTTATCTTTCCTTACGTTACCTATCTCAGATGTGGTCATAGTAATATACTTTTTTCTTTGTGCCACTTATCTTTCCTTTCTATGCTCCACTGATATATCAGCTGGTCCATGTGCCATTTGGTGATTGCTGCTTACATAGTTATTTTTATTTATCTCCGTACGCTATGTGATGTTATATTCCCTTCTCGATATATGTTCAGCCATTCAATCAGTTTTGATTAGTTAATGTTCATGCATCAGATTTGTTAATACAAAATGTTCTCTGATCTGGTATTCAGCTTGGCTACCAGTACATGTTACAAGTTCAATCTTCCACAAGCAATTGAGAAAGGTTGCAGGTGAGAGGCAAGCAGAAGCATGACAGGAATATTGATTTACTTACATGATAACCGTTGTGCCATTAGCCTTGGACAATCGGAGGTCATTGAGATTAAACTCTGCTTGCTTCGCATCCTCCATATGTTCAGCATGGATGGTGACTTTGGTCCATTGCTTGAGCTTATCAAGTTACACAGAATGTATGGGCTTTTGTTGGTCATGGACGTTGTTAGTGTTTTTCTCTCCCTTGAAATACATATTTTTTTCCTGACTATTGCCTTGGACAGTTGGAGATCATTGTGATGTTGGTGTAATTGGGCTTACTAAGTGCTCTGGTACTCATGGGCTTCTTCCCTGTTTTGACACCTTTTTGTTAGTATCAATTCAGAGAGAGACAATTTGCGTACATCCCTTGGATTTCATGATCTGGACAATCTTGGTTTGCAGCCCAAAGTAAAGGGCAAGTGTACGAATTTAGCCACAAAAGCGACGCCAACGAGGATCGCCATCGACGGTGACCGCTGCTCCATCGATCCTTCTTCCCCCGTTTGCTACTCTCACTTCACAGCCACAATCATGTCTTCCGCAGTGTTCGCATCAATGAGGCTGAATGCAACAAATCAAAGCTACTTGCCTGTGCCAATCACACTTGCGACAGCATATAAGATGCAGCATGGAGATAATCTGAAGTTAAAAACTTCCCATGGCTTGAAGATAAAGATCAAAATCAAGGAAGTAGCTAGCACACTGTACATGACGACAGGATGGAGATAATCTGAAGTTAGAAACTGGAGAAACGATTCTTTTCAGGATGCCATCAAGGTCTAAAGCGTGTGTTATGATACTGAACAGACAAGGCCTTATTAGATGTCCAGTGAAGACCCCATCCAACAGCTCATCAGCTAACAAAAGGTCCCCTGATCCATCAGGTCAATTAACCAGAGCAAGCACATTTGACCATGCATCTTCTAGCAAAAGCGTTCCATTTCTGAGGAATGGAACAGGCAGTAACAAAAGAAAACCTAGCAGACACCTCCTTCTGCCACCAGATTAAGCTCACAGCTGAATTGAAGAGTTACATCAAAGAGATTGCAGATTGTCTAGAAGAATCAAACAAGTTCTATGTCGTGCGTATGAACAGAACATTCATGGAACAGGACAGAGTGTACTTTGCGACTGAGTTTTCAAAGAAATACATTGTGAACTTGGTTCGAGGCAAGACAGCAAACATTAGAGTGCAGATTGCAGGTCGACCCTCAACAACTTAACATCAGGGTGGTTAGCTTTGCAGCAGCCAACAGCATCAACTTACACAATCTGCATCTTCCACTTTTATAGGACACAAGTCACCTCATGCTCACCATAGATGCTCTGTGAAAGTTACCTGCATCTTCAGTAGTCGCTGCTATTATCTACCCTGGAACAGCTACTATAATTCTCTCTATTATCCTTTGCTTGCGGTCTATCTAACTTCACTTGCTCAGTAAGCACGTGACCTATAACTGCTTATCATTGTCCTCAGCTCCTTTTGTTATTCATAAGCTGAGTGAACAATTAACCACTTTATGTACAAAC AGCTGGCTTGTTATACTACAGG ] [-] EMBL CB675214 [ CCATCACAGTCTAAAGCGTGTGTTATGATACTGAACAGACAAGGCTTTATTAGATGTCCAGTGAAGACCCCATCCAACAGCTCATCAGCGAACAAAAGGCCCCTTGATCCATCAGGTCAATTAACCAGAGCAAGCACATTTGACCATGCATCTCCTAGCAAAAGCGTTCCATTTCTGAGGAATGGAACAGGCAGTAACAAAAGAAAACCTAGCAGACACCTCCTTCTGCCACCAGATTAAGCTCACAGCTGAATTGAAGAGTTACATCAAAGAGATTGCAGATTTTCTAGAAGAATCAAACAAGTTCTATGTCGTGCGTATGAACAGAACATTCATGGAACAGGACAGAGTGTACTTTGCGACCGAGTTTTCAAAGAAATACATTGTGAACTTGGTTCGAGGCAAGACAGCAAACATTAGAGTGCAGATTGCAGGTCGACCCTCAACAACTTAACATCAGGGTGGTTAGCTTTGCAGCAGCCAACAGCATCAACTTACACAATCTGCATCTTCCACTTTT TAGG ACAAGTCACCTCACGCTCACCATAGATGCTCTGTGAAAGTTACCTGCATCTTCAGTAGTCGCTGCTATTATCTACACTGGAACAACTACTATAAT TCTCTATTATCCTTTGCTTGCGGTCTATCTAACTTCACTTGCTCTGTAAGCACGTGACCTATAACTGCTTATCATTGTCCTCAGCTCCTTTTGTTATCCATAAGCTGAGTGAACAATTAACCACTTTATGTACAAACAAGCTGGCTTGTTATACTACAGCTACTATGGTACTATTTGTTG] [-] EMBL CB634119 [ AGTAACAAAAGAAAACCTAGCAGACACCTCCTTCTGCCACCAGATTAAGCTCACAGCTGAATTGAAGAGTTACATCAAAGAGATTGCAGATTTTCTAGAAGAATCAAACAAGTTCTATGTCGTGCGTATGAACAGAACATTCATGGAACAGGACAGAGTGTACTTTGCGACCGAGTTTTCAAAGAAATACATTGTGAACTTGGTTCGAGGCAAGACAGCAAACATTAGAGTGCAGATTGCAGGTCGACCCTCAACAACTTAACATCAGGGTGGTTAGCTTTGCAGCAGCCAACAGCATCAACTTACACAATCTGCATCTTCCACTTTT TAGG ACAAGTCACCTCACGCTCACCATAGATGCTCTGTGAAAGTTACCTGCATCTTCAGTAGTCGCTGCTATTATCTACACTGGAACAACTACTATAAT TCTCTATTATCCTTTGCTTGCGGTCTATCTAACTTCACTTGCTCTGTAAGCACGTGACCTATAACTGCTTATCATTGTCCTCAGCTCCTTTTGTTATCCATAAGCTGAGTGAACAATTAACCACTTTATGTACAAAC AGCTGGCTTGTTATACTACAGGTACTATGGTACTATTTGTTG] consensusID : consensus_10713#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2281 fasta sequence [CGCCTCTGCGGCTGGGTCGCTCTCCACCGCGCCCACGCCGGCCTCACCTTCCTCATTCTGCGACCACTCTGGCATGGTCTTGGTACGGATTCCCAATAAACTGATGTTCGGTGATCTAATAAGTGAAGGCAAAATGAAGTAATATAATCGCATCAATTTGTAATGTTGTGGGGAGTTGATTTTGTTTTTGTTTTTCTGTACTGATGAGGTGTAGGCTAGCAGCGCCCGCCAACCGGCACTGAGGTAAGGAGTTCCACAACCACAGCACTCAGATGCAAATAATGGGCATGCCTCTGTCTAAGCTGCTAAGTAGAGAAGCACACTGCAAATAAGAGCTGAGTGAGCTAGGACCTGCCAATCTCTGTTTTCTCTTGTTCTTGGATTGCAATTTTTGATTTTAGATTGGATATTTGAGAGAATGCATAGGAAAGGGAAAGGAAAAGGGAAAGGGATGCCTTTACATTATACTTATCTTTCCTTACGTTACCCATCTCAGATGTGGTCATAGTAATATACTTTTTCCTTTGTGCCACTTATCTTTCCTTTCTATGCTCCACTGATATATCAGCTGGTCCATGTGCCATTTGGTGATTGCTGCTTACATAGTTGTTTTTATTTATCTCCGTACGCTATGTGATGTTATATTCCCTTCTCGATATATGTTCAGCCATTCAATCAGTTTTGATTAGTTAATGTTCATGCATCAGATTTGTTAATACAAAATGTTCTCTGATCTGGTATTCAGCTTGGCTACCAGTACATGTTACAAGTTCAATCCTCCACAAGCAATTGAGAAAGGTTGCAGGTGAGAGGCAAGCAGAAGCATGACAGGAATATTGATTTACTTACATGATAACCGTTGTGCCATTAGTTTCATCTGCATGTAACCTAAATAATTTCACGGTGCTCAACTGGATCACTGCGGGTGTAGTTTCATTGCTCATTTCCCATCCTTGGACAATCGGAGGTCATTGAGATTAAACTCTGCTTGCTTCGCATCCTCCATATGTTCAGCATGGATGGTGACTTTGCTCCATTGCTTGAGCTTATCAAGTTACACAGAATGTATGGGCTTTTGTTGGTCATGGACGTTCCTTGGACAGTTGGAGATCATTGCGATGTTGGTGTAATTGGGCTTACTAAGTGCTCTGGTACTCATGGGCTTCTTCCCTGTTTTGACACCTTTTTGTTAGTATCAATTCAGAGAGAGACAATTTGCGTACATCCCTTGGATTTCATGATATGGCCACAATCATGTCTTCCGCAGTTTTCGCATCAATGAGGCTGAATGCAACAAATCAAAGCTACTTGCATATAAGATGCAGCGTGGAGATAATCTGAAGTTAAAAACTTCCCATGGCTTGAAGATAAAGATCAAAATCAAGGAAGTAGCTAGCACACTGTACATGACGACATGATGGAAATAATTTGTAGAGGCAACTGGATTAGAAACTGGAGAAACGATTCTTTTCTGGATGCCATCACAGTCTAAAGCGTGTGTTATGATACTGAACAGACAAGGCCTTATTAGATGTCCAGTGAAGACCCCATCCAACAGCTCATCAGCGAACAAAAGGCCCCTTGATCCATCAGGTCAATTAACCAGAGCAAGCACATTTGACCATGCATCTCCTAGCAAAAGCGTTCCATTTCTGAGGAATGGAACAGGCAGTAACAAAAGAAAACCTAGCAGACACCTCCTTCTGCCACCAGATTAAGCTCACAGCTGAATTGAAGAGTTACATCAAAGAGATTGCAGATTTTCTAGAAGAATCAAACA-AGTTCTATGTCGTGCGTATGAACAGAACATTCATGGAACAGGACA-GAGTGTACTTTGCGACCGAGTTTTCAAAGAAATACATTGTGAACTTGGTTCGAGGCA-AGACAGCAA-ACATTAGAGTGCAGATTGCAGGTCGACCCTCAACAACTTAACATCAGGGTGGTTAGCTTTGCAGCAGCCAACAGCATCAACTTACACAATCTGCATCTTCCACTTTTTAGGACAAGTCACCTCACGCTCACCATAGATGCTCTGTGAAAGTTACCTGCATCTTCAGTAGTCGCTGCTATTATCTACACTGGAACAACTACTATAATTCTCTATTATCCTTTGCTTGCGGTCTATCTAACTTCACTTGCTCTGTAAGCACGTGACCTATAACTGCTTATCATTGTCCTCAGCTCCTTTTGTTATCCATAAGCTGAGTGAACAATTAACCACTTTATGTACAAACAGCTGGCTTGTTATACTACAGCTACTATGGTAAAAAAAAAAAAAAAA] [+] EMBL AK120410 [CGCCTCTGCGGCTGGGTCGCTCTCCACCGCGCCCACGCCGGCCTCACCTTCCTCATTCTGCGACCACTCTGGCATGGTCTTGGTACGGATTCCCAATAAACTGATGTTCGGTGATCTAATAAGTGAAGGCAAAATGAAGTAATATAATCGCATCAATTTGTAATGTTGTGGGGAGTTGATTTTGTTTTTGTTTTTCTGTACTGATGAGGTGTAGGCTAGCAGCGCCCGCCAACCGGCACTGAGGTAAGGAGTTCCACAACCACAGCACTCAGATGCAAATAATGGGCATGCCTCTGTCTAAGCTGCTAAGTAGAGAAGCACACTGCAAATAAGAGCTGAGTGAGCTAGGACCTGCCAATCTCTGTTTTCTCTTGTTCTTGGATTGCAATTTTTGATTTTAGATTGGATATTTGAGAGAATGCATAGGAAAGGGAAAGGAAAAGGGAAAGGGATGCCTTTACATTATACTTATCTTTCCTTACGTTACCCATCTCAGATGTGGTCATAGTAATATACTTTTTCCTTTGTGCCACTTATCTTTCCTTTCTATGCTCCACTGATATATCAGCTGGTCCATGTGCCATTTGGTGATTGCTGCTTACATAGTTGTTTTTATTTATCTCCGTACGCTATGTGATGTTATATTCCCTTCTCGATATATGTTCAGCCATTCAATCAGTTTTGATTAGTTAATGTTCATGCATCAGATTTGTTAATACAAAATGTTCTCTGATCTGGTATTCAGCTTGGCTACCAGTACATGTTACAAGTTCAATCCTCCACAAGCAATTGAGAAAGGTTGCAGGTGAGAGGCAAGCAGAAGCATGACAGGAATATTGATTTACTTACATGATAACCGTTGTGCCATTAGTTTCATCTGCATGTAACCTAAATAATTTCACGGTGCTCAACTGGATCACTGCGGGTGTAGTTTCATTGCTCATTTCCCATCCTTGGACAATCGGAGGTCATTGAGATTAAACTCTGCTTGCTTCGCATCCTCCATATGTTCAGCATGGATGGTGACTTTGCTCCATTGCTTGAGCTTATCAAGTTACACAGAATGTATGGGCTTTTGTTGGTCATGGACGTTCCTTGGACAGTTGGAGATCATTGCGATGTTGGTGTAATTGGGCTTACTAAGTGCTCTGGTACTCATGGGCTTCTTCCCTGTTTTGACACCTTTTTGTTAGTATCAATTCAGAGAGAGACAATTTGCGTACATCCCTTGGATTTCATGATATGGCCACAATCATGTCTTCCGCAGTTTTCGCATCAATGAGGCTGAATGCAACAAATCAAAGCTACTTGCATATAAGATGCAGCGTGGAGATAATCTGAAGTTAAAAACTTCCCATGGCTTGAAGATAAAGATCAAAATCAAGGAAGTAGCTAGCACACTGTACATGACGACATGATGGAAATAATTTGTAGAGGCAACTGGATTAGAAACTGGAGAAACGATTCTTTTCTGGATGCCATCACAGTCTAAAGCGTGTGTTATGATACTGAACAGACAAGGCCTTATTAGATGTCCAGTGAAGACCCCATCCAACAGCTCATCAGCGAACAAAAGGCCCCTTGATCCATCAGGTCAATTAACCAGAGCAAGCACATTTGACCATGCATCTCCTAGCAAAAGCGTTCCATTTCTGAGGAATGGAACAGGCAGTAACAAAAGAAAACCTAGCAGACACCTCCTTCTGCCACCAGATTAAGCTCACAGCTGAATTGAAGAGTTACATCAAAGAGATTGCAGATTTTCTAGAAGAATCAAACA AGTTCTATGTCGTGCGTATGAACAGAACATTCATGGAACAGGACA GAGTGTACTTTGCGACCGAGTTTTCAAAGAAATACATTGTGAACTTGGTTCGAGGCA AGACAGCAA ACATTAGAGTGCAGATTGCAGGTCGACCCTCAACAACTTAACATCAGGGTGGTTAGCTTTGCAGCAGCCAACAGCATCAACTTACACAATCTGCATCTTCCACTTTTTAGGACAAGTCACCTCACGCTCACCATAGATGCTCTGTGAAAGTTACCTGCATCTTCAGTAGTCGCTGCTATTATCTACACTGGAACAACTACTATAATTCTCTATTATCCTTTGCTTGCGGTCTATCTAACTTCACTTGCTCTGTAAGCACGTGACCTATAACTGCTTATCATTGTCCTCAGCTCCTTTTGTTATCCATAAGCTGAGTGAACAATTAACCACTTTATGTACAAACAGCTGGCTTGTTATACTACAGCTA ] [-] EMBL CB630299 [ GGCCTTATTAGATGTCCAGTGAAGACCCCATCCAACAGCTCATCAGCGAACAAAAGGCCCCTTGATCCATCAGGTCAATTAACCAGAGCAAGCACATTTGACCATGCATCTCCTAGCAAAAGCGTTCCATTTCTGAGGAATGGAACAGGCAGTAACAAAAGAAAACCTAGCAGACACCTCCTTCTGCCACCAGATTAAGCTCACAGCTGAATTGAAGAGTTACATCAAAGAGATTGCAGATTTTCTAGAAGAATCAAACA AGTTCTATGTCGTGCGTATGAACAGAACATTCATGGAACAGGACA GAGTGTACTTTGCGACCGAGTTTTCAAAGAAATACATTGTGAACTTGGTTCGAGGCA AGACAGCAA ACATTAGAGTGCAGATTGCAGGTCGACCCTCAACAACTTAACATCAGGGTGGTTAGCTTTGCAGCAGCCAACAGCATCAACTTACACAATCTGCATCTTCCACTTTTTAGGACAAGTCACCTCACGCTCACCATAGATGCTCTGTGAAAGTTACCTGCATCTTCAGTAGTCGCTGCTATTATCTACACTGGAACAACTACTATAATTCTCTATTATCCTTTGCTTGCGGTCTATCTAACTTCACTTGCTCTGTAAGCACGTGACCTATAACTGCTTATCATTGTCCTCAGCTCCTTTTGTTATCCATAAGCTGAGTGAACAATTAACCACTTTATGTACAAACAGCTGGCTTGTTATACTACAGCTACTATGGTAAAAAAAAAAAAAAAA] [+] EMBL BI813140 [ CTGAATTGAAGAGTTACATCAAAGAGATT CAGATTTTCTAGAAGAATCAAACACAGTTCTATGTCGTGCGTATGAACAGAACATTCATGGAACAGGACACGAGTGTACTTTGCGACCGAGTTTTCAAAGAAATACCTTGTGAACTTGGTTCGAGGCACAGACACCAACAC TTAGAGTGCAGATTGCAGGTCGACCCTCAACAACTTAACATCAGGGTGGTTAGCTTTGCAGCAGCC ACAGCATCAACTTACAC ATCTGCATCTTCCACTTTTTAGGACAAGTCACCTCACGCTCACCATAGATGCTCTGTGAAAGTTACCTGCATCTTCAGTAGTCGCTGCTATTATCTACACTGGAACAACTACTATAATTCTCTATTATCCTTTGCTTGCGGTCTATCTAACTTCACTTGCTCTGTAAGCACGTGACCTATAACTGCTTATCATTGTCCTCAGCTCCTTTTGTTATCCATAAGCTGAGTGAAC ATTAACCCCTTTATGTACCAACAGCTGGCTTGTTATACTACAaaa ] consensusID : consensus_10713#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 543 fasta sequence [ATTGCGATGTTGGTGTAATTGGGCTTACTAAGTGCTCTGGTACTCATGGGCTTCTTCCCTGTTTTGACACCTTTTTGTTAGTATCAATTCAGAGAGACAATTTGCGTACATCCCTTGGATTTCATGATATGGCCACAATCATGTCTTCCGCAGTTTTCGCATCAATGAGGCTGAATGCAACAAATCAAAGCTACTTGCATATAAGATGCAGCGTGGAGATAATCTGAAGTTAAAAACTTCCCATGGCTTGAAGATAAAGATCAAAATCAAGGAAGTAGCTAGCACACTGTACATGACGACATGATGGAAATAATTTGTAGAGGCAACTGGATTAGAAACTGGAGAAACGATTCTTTTCTGGATGCCATCACAGTCTAAAGCGTGTGTTATGATACTGAACAGACAAGGCCTTATTAGATGTCCAGTGANGNCCCCATCCAACAGCTCATCAGCGAACAAAAGGCCCCTTGATCCATCAGGTCAATTAACCNNNNNAAGCACATTTGACCATGCATCTCNTNNNNNNGCGTTCNNNTNCNNNNN] [+] EMBL CF196978 [ATTGCGATGTTGGTGTAATTGGGCTTACTAAGTGCTCTGGTACTCATGGGCTTCTTCCCTGTTTTGACACCTTTTTGTTAGTATCAATTCAGAGAGACAATTTGCGTACATCCCTTGGATTTCATGATATGGCCACAATCATGTCTTCCGCAGTTTTCGCATCAATGAGGCTGAATGCAACAAATCAAAGCTACTTGCATATAAGATGCAGCGTGGAGATAATCTGAAGTTAAAAACTTCCCATGGCTTGAAGATAAAGATCAAAATCAAGGAAGTAGCTAGCACACTGTACATGACGACATGATGGAAATAATTTGTAGAGGCAACTGGATTAGAAACTGGAGAAACGATTCTTTTCTGGATGCCATCACAGTCTAAAGCGTGTGTTATGATACTGAACAGACAAGGCCTTATTAGATGTCCAGTGANGNCCCCATCCAACAGCTCATCAGCGAACAAAAGGCCCCTTGATCCATCAGGTCAATTAACCNNNNNAAGCACATTTGACCATGCATCTCNTNNNNNNGCGTTCNNNTNCNNNNN] consensusID : consensus_10713#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence [GCTGCAGCCGCTGCAGTGGCCTGCGAGGGACGCGCTGTGCGGCGAGCTCGGCGCCGGTGACGCCGGCCGCCGCGTGCGCCTCTGCGGCTGGGTCGCTCTCCACCGCGCCCACGCCGGCCTCACCTTCCTCACCCTTCGTGACCGATCCGGCACGGTCCAGGTGACAACTTTGCCAGAATATCCAGAAGTTTATGCTGTGGTGAACAAGCTAAGAGTAGAGTCGGTGGTTGCGGTCGAGGGGGTTGTTCGGTCACGCCCAACAGAAGCCATCAACACAGATATGAAGACTGGGGCTATAGAGGATGCTGCCGATAATATATATGTGCTGAACTCAATAACTCGTTCATTGCCTTTTCCAATCACCACTGCTGATACTGTAAAAGAGAAGTTTCCAGAAGAAATTAGACTGAGATTCCGGGTGCTGGACTTACGCCGACCACAAATGCAGTCGAAC] [+] EMBL CB629023 [GCTGCAGCCGCTGCAGTGGCCTGCGAGGGACGCGCTGTGCGGCGAGCTCGGCGCCGGTGACGCCGGCCGCCGCGTGCGCCTCTGCGGCTGGGTCGCTCTCCACCGCGCCCACGCCGGCCTCACCTTCCTCACCCTTCGTGACCGATCCGGCACGGTCCAGGTGACAACTTTGCCAGAATATCCAGAAGTTTATGCTGTGGTGAACAAGCTAAGAGTAGAGTCGGTGGTTGCGGTCGAGGGGGTTGTTCGGTCACGCCCAACAGAAGCCATCAACACAGATATGAAGACTGGGGCTATAGAGGATGCTGCCGATAATATATATGTGCTGAACTCAATAACTCGTTCATTGCCTTTTCCAATCACCACTGCTGATACTGTAAAAGAGAAGTTTCCAGAAGAAATTAGACTGAGATTCCGGGTGCTGGACTTACGCCGACCACAAATGCAGTCGAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10713#0 --------------------------------CAGTCCCCTCCTCCCTCTCGTTCATTGC 28 consensus_10713#2 ------------------------------------------------------------ consensus_10713#1 CGCCTCTGCGGCTGGGTCGCTCTCCACCGCGCCCACGCCGGCCTCACCTTCCTCATTCTG 60 consensus_10713#3 ------------------------------------------------------------ consensus_10713#0 TCAGTATGTATCATCGAGAATGGTACGGATTCCCAATAAACTGATGTTGGGTGATCTAAT 88 consensus_10713#2 ------------------------------------------------------------ consensus_10713#1 CGACCACTCTGGCATGGTCTTGGTACGGATTCCCAATAAACTGATGTTCGGTGATCTAAT 120 consensus_10713#3 ------------------------------------------------------------ consensus_10713#0 AACTGAAGGCAAAATGAAGTAATATAATCGCATCAATTTGTAATGTTGTGGGGAGTTGAT 148 consensus_10713#2 ------------------------------------------------------------ consensus_10713#1 AAGTGAAGGCAAAATGAAGTAATATAATCGCATCAATTTGTAATGTTGTGGGGAGTTGAT 180 consensus_10713#3 ------------------------------------------------------------ consensus_10713#0 TTTGTTTTTGTTTTTCTGTACTGATGAGGTGTAGGCTAGCAGCGCCCGCCAACCGGCACT 208 consensus_10713#2 ------------------------------------------------------------ consensus_10713#1 TTTGTTTTTGTTTTTCTGTACTGATGAGGTGTAGGCTAGCAGCGCCCGCCAACCGGCACT 240 consensus_10713#3 ------------------------------------------------------------ consensus_10713#0 GAGGTAAGGAGTTCCACAACCACAGCACTCAGATGCAAATAATGGGCATGCCTCTGTCTA 268 consensus_10713#2 ------------------------------------------------------------ consensus_10713#1 GAGGTAAGGAGTTCCACAACCACAGCACTCAGATGCAAATAATGGGCATGCCTCTGTCTA 300 consensus_10713#3 ------------------------------------------------------------ consensus_10713#0 AGCTACTAAGCAGAGAAGCACACTGCAAATAAGAGCTGAGTGAGCTGGGAGCTGCCAATC 328 consensus_10713#2 ------------------------------------------------------------ consensus_10713#1 AGCTGCTAAGTAGAGAAGCACACTGCAAATAAGAGCTGAGTGAGCTAGGACCTGCCAATC 360 consensus_10713#3 ------------------------------------------------------------ consensus_10713#0 TCTGTTTTCTCTTTTTCTTGGATTGCAATTTTTGATTTTAGATTGGATATTTGAGAGAAT 388 consensus_10713#2 ------------------------------------------------------------ consensus_10713#1 TCTGTTTTCTCTTGTTCTTGGATTGCAATTTTTGATTTTAGATTGGATATTTGAGAGAAT 420 consensus_10713#3 ------------------------------------------------------------ consensus_10713#0 GCATAGGAAAGGGAAAGGAAAAGGGAAAGGGATGCCTTTACATTGTACTTATCTTTCCTT 448 consensus_10713#2 ------------------------------------------------------------ consensus_10713#1 GCATAGGAAAGGGAAAGGAAAAGGGAAAGGGATGCCTTTACATTATACTTATCTTTCCTT 480 consensus_10713#3 ------------------------------------------------------------ consensus_10713#0 ACGTTACCTATCTCAGATGTGGTCATAGTAATATACTTTTTTCTTTGTGCCACTTATCTT 508 consensus_10713#2 ------------------------------------------------------------ consensus_10713#1 ACGTTACCCATCTCAGATGTGGTCATAGTAATATACTTTTTCCTTTGTGCCACTTATCTT 540 consensus_10713#3 ------------------------------------------------------------ consensus_10713#0 TCCTTTCTATGCTCCACTGATATATCAGCTGGTCCATGTGCCATTTGGTGATTGCTGCTT 568 consensus_10713#2 ------------------------------------------------------------ consensus_10713#1 TCCTTTCTATGCTCCACTGATATATCAGCTGGTCCATGTGCCATTTGGTGATTGCTGCTT 600 consensus_10713#3 ------------------------------------------------------------ consensus_10713#0 ACATAGTTATTTTTATTTATCTCCGTACGCTATGTGATGTTATATTCCCTTCTCGATATA 628 consensus_10713#2 ------------------------------------------------------------ consensus_10713#1 ACATAGTTGTTTTTATTTATCTCCGTACGCTATGTGATGTTATATTCCCTTCTCGATATA 660 consensus_10713#3 ------------------------------------------------------------ consensus_10713#0 TGTTCAGCCATTCAATCAGTTTTGATTAGTTAATGTTCATGCATCAGATTTGTTAATACA 688 consensus_10713#2 ------------------------------------------------------------ consensus_10713#1 TGTTCAGCCATTCAATCAGTTTTGATTAGTTAATGTTCATGCATCAGATTTGTTAATACA 720 consensus_10713#3 ------------------------------------------------------------ consensus_10713#0 AAATGTTCTCTGATCTGGTATTCAGCTTGGCTACCAGTACATGTTACAAGTTCAATCTTC 748 consensus_10713#2 ------------------------------------------------------------ consensus_10713#1 AAATGTTCTCTGATCTGGTATTCAGCTTGGCTACCAGTACATGTTACAAGTTCAATCCTC 780 consensus_10713#3 ------------------------------------------------------------ consensus_10713#0 CACAAGCAATTGAGAAAGGTTGCAGGTGAGAGGCAAGCAGAAGCATGACAGGAATATTGA 808 consensus_10713#2 ------------------------------------------------------------ consensus_10713#1 CACAAGCAATTGAGAAAGGTTGCAGGTGAGAGGCAAGCAGAAGCATGACAGGAATATTGA 840 consensus_10713#3 ------------------------------------------------------------ consensus_10713#0 TTTACTTACATGATAACCGTTGTGCCATTAGCCT---------------TGGACAATCGG 853 consensus_10713#2 ------------------------------------------------------------ consensus_10713#1 TTTACTTACATGATAACCGTTGTGCCATTAGTTTCATCTGCATGTAACCTAAATAATTTC 900 consensus_10713#3 ------------------------------------------------------------ consensus_10713#0 AGGTCATTGAGATTAAACTCTGCTTGCTTCGCATCCTCCATATGTTCAGCATGGATGGTG 913 consensus_10713#2 ------------------------------------------------------------ consensus_10713#1 ACGGTGCTCAACTGGATCACTGCGGGTGTAGTTTCATTGCTCATTTCCCATCCTTGGACA 960 consensus_10713#3 ------------------------------------------------------------ consensus_10713#0 ACTTTGGTCCATTGC--TTGAGCTTATCAAGTTACACAGAATGTATGGGCTTTTGTTGGT 971 consensus_10713#2 ------------------------------------------------------------ consensus_10713#1 ATCGGAGGTCATTGAGATTAAACTCTGCTTGCTTCGCATCCTCCATATGTTCAGCATGGA 1020 consensus_10713#3 ------------------------------------------------------------ consensus_10713#0 CATGGACGTTG---------TTAGTGTTTTTCTCTCCCTTGAAATACATATTTTTTTCCT 1022 consensus_10713#2 ------------------------------------------------------------ consensus_10713#1 TGGTGACTTTGCTCCATTGCTTGAGCTTATCAAGTTACACAGAATGTATGGGCTTTTGTT 1080 consensus_10713#3 ------------------------------------------------------------ consensus_10713#0 GACTATTG-----CCTTGGACAGTTGGAGATCATTGTGATGTTGGTGTAATTGGGCTTAC 1077 consensus_10713#2 --------------------------------ATTGCGATGTTGGTGTAATTGGGCTTAC 28 consensus_10713#1 GGTCATGGACGTTCCTTGGACAGTTGGAGATCATTGCGATGTTGGTGTAATTGGGCTTAC 1140 consensus_10713#3 ------------------------------------------------------------ consensus_10713#0 TAAGTGCTCTGGTACTCATGGGCTTCTTCCCTGTTTTGACACCTTTTTGTTAGTATCAAT 1137 consensus_10713#2 TAAGTGCTCTGGTACTCATGGGCTTCTTCCCTGTTTTGACACCTTTTTGTTAGTATCAAT 88 consensus_10713#1 TAAGTGCTCTGGTACTCATGGGCTTCTTCCCTGTTTTGACACCTTTTTGTTAGTATCAAT 1200 consensus_10713#3 ------------------------------------------------------------ consensus_10713#0 TCAGAGAGAGACAATTTGCGTACATCCCTTGGATTTCATGATCTGGACAATCTTGGTTTG 1197 consensus_10713#2 TCAGAGAG--ACAATTTGCGTACATCCCTTGGATTTCATGATATGG-------------- 132 consensus_10713#1 TCAGAGAGAGACAATTTGCGTACATCCCTTGGATTTCATGATATGG-------------- 1246 consensus_10713#3 ------------------------------------------------------------ consensus_10713#0 CAGCCCAAAGTAAAGGGCAAGTGTACGAATTTAGCCACAAAAGCGACGCCAACGAGGATC 1257 consensus_10713#2 ------------------------------------------------------------ consensus_10713#1 ------------------------------------------------------------ consensus_10713#3 ------------------------------------------------------------ consensus_10713#0 GCCATCGACGGTGACCGCTGCTCCATCGATCCTTCTTCCCCCGTTTGCTACTCTCACTTC 1317 consensus_10713#2 ------------------------------------------------------------ consensus_10713#1 ------------------------------------------------------------ consensus_10713#3 ------------------------------------------------------------ consensus_10713#0 ACAGCCACAATCATGTCTTCCGCAGTGTTCGCATCAATGAGGCTGAATGCAACAAA-TCA 1376 consensus_10713#2 ----CCACAATCATGTCTTCCGCAGTTTTCGCATCAATGAGGCTGAATGCAACAAA-TCA 187 consensus_10713#1 ----CCACAATCATGTCTTCCGCAGTTTTCGCATCAATGAGGCTGAATGCAACAAA-TCA 1301 consensus_10713#3 ---------GCTGCAGCCGCTGCAGTGGCC-TGCGAGGGACGCGCTGTGCGGCGAGCTCG 50 * * ***** * * ** ** *** * * ** consensus_10713#0 AAGCTACTTGCCTGTGCCAATCACACTTGCGACAGCATATAAGATGCAGCATGGAGATAA 1436 consensus_10713#2 AAGCTACTTGC-------------------------ATATAAGATGCAGCGTGGAGATAA 222 consensus_10713#1 AAGCTACTTGC-------------------------ATATAAGATGCAGCGTGGAGATAA 1336 consensus_10713#3 GCGCCGGTGAC--------------------GCCGGCCGCCGCGTGCGCCTCTGCGGCTG 90 ** * * *** * * * consensus_10713#0 TCTGAAGTTAAAAACTTCCCATGGCTTGAAGATAAAGATCAAAATCAAGGAAGTAGCTAG 1496 consensus_10713#2 TCTGAAGTTAAAAACTTCCCATGGCTTGAAGATAAAGATCAAAATCAAGGAAGTAGCTAG 282 consensus_10713#1 TCTGAAGTTAAAAACTTCCCATGGCTTGAAGATAAAGATCAAAATCAAGGAAGTAGCTAG 1396 consensus_10713#3 GGTCGCTCTCCACCGCGCCCACGCCGGCCTCACCTTCCTCACCCTTCGTGACCGATCCGG 150 * * * **** * * * *** * ** * * * consensus_10713#0 CACACTGTACATGACGACAGGATGGAGATAATCTGAAG-----------TTAGAAACTGG 1545 consensus_10713#2 CACACTGTACATGACGACATGATGGAAATAATTTGTAGAGGCAACTGGATTAGAAACTGG 342 consensus_10713#1 CACACTGTACATGACGACATGATGGAAATAATTTGTAGAGGCAACTGGATTAGAAACTGG 1456 consensus_10713#3 CACGGTCCAGGTGACAACTTTGCCAGAATATCCAGAAGT----------TTATGCTGTGG 200 *** * * **** ** *** * ** *** *** consensus_10713#0 AGAAACGATTCTTTTCAGGAT--GCCATCAAGGTCTAAAGCGT-GTGTTATGATACTGAA 1602 consensus_10713#2 AGAAACGATTCTTTTCTGGAT--GCCATCACAGTCTAAAGCGT-GTGTTATGATACTGAA 399 consensus_10713#1 AGAAACGATTCTTTTCTGGAT--GCCATCACAGTCTAAAGCGT-GTGTTATGATACTGAA 1513 consensus_10713#3 TGAACAAGCTAAGAGTAGAGTCGGTGGTTGCGGTCGAGGGGGTTGTTCGGTCACGCCCAA 260 *** * * * * * *** * * ** ** * * * ** consensus_10713#0 CAGACAAGGCCTTATTAGATGTCCAGTGAAGACCCCATCCAACAGCTCATCAGCTAACAA 1662 consensus_10713#2 CAGACAAGGCCTTATTAGATGTCCAGTGANGNCCCCATCCAACAGCTCATCAGCGAACAA 459 consensus_10713#1 CAGACAAGGCCTTATTAGATGTCCAGTGAAGACCCCATCCAACAGCTCATCAGCGAACAA 1573 consensus_10713#3 CAGA--AGCCATCAACACAGAT---ATGAAGACTGGGGCTATAGAGGATGCTGCCGATAA 315 **** ** * * * * * * *** * * * * * ** * ** consensus_10713#0 AAGGTCCCCTGATCCATCAGGTCAATTAACCAGAGCAAGCACATTTGACCATGCATCTTC 1722 consensus_10713#2 AAGGCCCCTTGATCCATCAGGTCAATTAACCNNNNNAAGCACATTTGACCATGCATCTCN 519 consensus_10713#1 AAGGCCCCTTGATCCATCAGGTCAATTAACCAGAGCAAGCACATTTGACCATGCATCTCC 1633 consensus_10713#3 TATATATG-TGCTGAACTCAATAACTCGTTCATTGCCTTTTCCAATCACCACTGCTGATA 374 * ** * * * * * * * * **** * consensus_10713#0 TAGCAAAAGCGTTCCATTTCTGAGGAATGGAACAGGCAGTAACAAAAGAAAACCTAGCAG 1782 consensus_10713#2 TNNNNNN-GCGTTCNNNTNCNNNNN----------------------------------- 543 consensus_10713#1 TAGCAAAAGCGTTCCATTTCTGAGGAATGGAACAGGCAGTAACAAAAGAAAACCTAGCAG 1693 consensus_10713#3 CTGTAAAAGAGAAGTTTCCAGAAGAAATTAGACTGAGATTCCGGGTGCTGGACTTA--CG 432 * * consensus_10713#0 ACACCTCCTTCTGCCACCAGATTAAGCTCACAGCTGAATTGAAGAGTTACATCAAAGAGA 1842 consensus_10713#2 ------------------------------------------------------------ consensus_10713#1 ACACCTCCTTCTGCCACCAGATTAAGCTCACAGCTGAATTGAAGAGTTACATCAAAGAGA 1753 consensus_10713#3 CCGACCACAAATGCAGTCGAAC-------------------------------------- 454 consensus_10713#0 TTGCAGATTTTCTAGAAGAATCAAACAAGTTCTATGTCGTGCGTATGAACAGAACATTCA 1902 consensus_10713#2 ------------------------------------------------------------ consensus_10713#1 TTGCAGATTTTCTAGAAGAATCAAACAAGTTCTATGTCGTGCGTATGAACAGAACATTCA 1813 consensus_10713#3 ------------------------------------------------------------ consensus_10713#0 TGGAACAGGACAGAGTGTACTTTGCGACCGAGTTTTCAAAGAAATACATTGTGAACTTGG 1962 consensus_10713#2 ------------------------------------------------------------ consensus_10713#1 TGGAACAGGACAGAGTGTACTTTGCGACCGAGTTTTCAAAGAAATACATTGTGAACTTGG 1873 consensus_10713#3 ------------------------------------------------------------ consensus_10713#0 TTCGAGGCAAGACAGCAAACATTAGAGTGCAGATTGCAGGTCGACCCTCAACAACTTAAC 2022 consensus_10713#2 ------------------------------------------------------------ consensus_10713#1 TTCGAGGCAAGACAGCAAACATTAGAGTGCAGATTGCAGGTCGACCCTCAACAACTTAAC 1933 consensus_10713#3 ------------------------------------------------------------ consensus_10713#0 ATCAGGGTGGTTAGCTTTGCAGCAGCCAACAGCATCAACTTACACAATCTGCATCTTCCA 2082 consensus_10713#2 ------------------------------------------------------------ consensus_10713#1 ATCAGGGTGGTTAGCTTTGCAGCAGCCAACAGCATCAACTTACACAATCTGCATCTTCCA 1993 consensus_10713#3 ------------------------------------------------------------ consensus_10713#0 CTTTTTAGGACAAGTCACCTCACGCTCACCATAGATGCTCTGTGAAAGTTACCTGCATCT 2142 consensus_10713#2 ------------------------------------------------------------ consensus_10713#1 CTTTTTAGGACAAGTCACCTCACGCTCACCATAGATGCTCTGTGAAAGTTACCTGCATCT 2053 consensus_10713#3 ------------------------------------------------------------ consensus_10713#0 TCAGTAGTCGCTGCTATTATCTACACTGGAACAACTACTATAATTCTCTATTATCCTTTG 2202 consensus_10713#2 ------------------------------------------------------------ consensus_10713#1 TCAGTAGTCGCTGCTATTATCTACACTGGAACAACTACTATAATTCTCTATTATCCTTTG 2113 consensus_10713#3 ------------------------------------------------------------ consensus_10713#0 CTTGCGGTCTATCTAACTTCACTTGCTCTGTAAGCACGTGACCTATAACTGCTTATCATT 2262 consensus_10713#2 ------------------------------------------------------------ consensus_10713#1 CTTGCGGTCTATCTAACTTCACTTGCTCTGTAAGCACGTGACCTATAACTGCTTATCATT 2173 consensus_10713#3 ------------------------------------------------------------ consensus_10713#0 GTCCTCAGCTCCTTTTGTTATCCATAAGCTGAGTGAACAATTAACCACTTTATGTACAAA 2322 consensus_10713#2 ------------------------------------------------------------ consensus_10713#1 GTCCTCAGCTCCTTTTGTTATCCATAAGCTGAGTGAACAATTAACCACTTTATGTACAAA 2233 consensus_10713#3 ------------------------------------------------------------ consensus_10713#0 CAGCTGGCTTGTTATACTACAGGTACTATGGTACTATTTGTTG----- 2365 consensus_10713#2 ------------------------------------------------ consensus_10713#1 CAGCTGGCTTGTTATACTACAGCTACTATGGTAAAAAAAAAAAAAAAA 2281 consensus_10713#3 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||