These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10714#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1700 fasta sequence [CGTGCTTGTCCTCTGGGTCTCTGTCCCCCTCATCTCTCTCCTCCTCACTCTCCTCGGCTGCTCTCCTCCTCTGTCGGTGGTGCACTGCTTGCTCGATCCTCTGCAATGGCGGTCGACCCGCGCCAGGTGGTGGCCGGGTTCCTGACCCTGTCCATGTTCGTCATGCTCGGCAACATGATCAAGCACGACCACTTCACCCCCGTCGGCGCCGGCCAGGAGGAGTTGGGCTTGGAGGCAACAGGCATAGAATCAAACGAAATTAAAATTGCAGATACTACTGAAATGACTAAGGTCAACAAGGCTGGAGTGGATCTCCCAAAGGAGACTGCTGAGGAGATTAGACCCTGCTGGTCTAAACCAAGATCAAATGTTCAGGAGTCTAAGGGTTTTGTTACATTCTCATTGACTATGGGCCCTGAATACCACATC-TCACAGATTACTGATGCTGTGGTTATCGCAAG-ATATTTAGGTGCAACACTTGTGCTTCCAGAAATTAG-AGGAAATGAGTTAGGAAAGAGGCGGAAATTCGAAGACATGTATGATGTGGATAAATTCATGACGAGCTTGGATGGAGTTGTCAAAGTAGTACATTCACTTCCTAATGCAGTGTCTTCTAAGAAGCCAGCAGTAGTTAGAGTACCAAACCGGGTGACTGAAGAGTTCATCACGGGAACCATTGAGCCGATCTTCCAAAGAAATAACTACTTACGACTTGCGACTATTTTCTCTTCAGTAAGTTTGAAACAGAAGGAGTCGGGTAACAAGGACTTGGATTCGACTGCCTGCCTTGCAATGTTCAGTGGCCTTCAGTTGAAACCTGAATTTTCAGCAGTAGCCAAGCATATGTTGGACAAGCTTAAAGAAATAAGCGAGAAATCCGATGGGATGGTTATAGCTATTGATTTACAGACCGAATTGCTAGAAAAGAAGATCTGTAAGACGAATGGAGGTGCAAGAAGAAGAGGCTGTTATTACCCTCAGGAAGTTGTGCACTTCCTGAAGAAGGTTGGCTTCTCTGCTGATACAACCATCTACTTGACGGAGACATGGTGGCACAAAAGCCTGGATACTCTGAAGGAGGCATTTCCAAACACTTATACCAAGGATGATATAATGCCGGCCGCTAACAAAGGCGAGTTCCTGAAATCCGGGGATTCATACCTTGCAAGAGCACTGGACCTCAAAATCTGCTCGGAGAGCGACGTGTTCGTCCCTGCCATCCCCGGCCTGTTCTACGGACATGTCGCCGGTAAGAGGATCGCTGCAGGCCTGACAAACATCATAGTTCCTGCTCCAGTGTCCAGCAGTTCAGCTCTGGCTTCAGAGTTCGTCTCCACATACGTGTCCAAGAAGAGCCATCTTGCCTACTCATGTTACTGCTAGTACTGTTCTTATATCATCAGCATCAGCATCAGCATCAATAAGTTCAACTGAAGTGAGTTGCTTGGCCAAGCTTTGGGTACATATGTAAGTCCTTTTGTTGTATACTAGTTCATGATGTTGTGAGGAACAGTATCATTTATGTGTTACTTAATTGTTGTTGATAACAAAAGGAGAGAAGCACAGAATTAGTGTGCTGAAAAAAAAAGGACACTAGATTAGGCATGTGGAAAGAGTGTGTGCTTCATGTACTACCAAGTTATGGTTCATCAGCTGGAAATTACTCCAAAATACTGCTTCCATAGAAGATGTGATGTGTG] [+] EMBL AK070571 [CGTGCTTGTCCTCTGGGTCTCTGTCCCCCTCATCTCTCTCCTCCTCACTCTCCTCGGCTGCTCTCCTCCTCTGTCGGTGGTGCACTGCTTGCTCGATCCTCTGCAATGGCGGTCGACCCGCGCCAGGTGGTGGCCGGGTTCCTGACCCTGTCCATGTTCGTCATGCTCGGCAACATGATCAAGCACGACCACTTCACCCCCGTCGGCGCCGGCCAGGAGGAGTTGGGCTTGGAGGCAACAGGCATAGAATCAAACGAAATTAAAATTGCAGATACTACTGAAATGACTAAGGTCAACAAGGCTGGAGTGGATCTCCCAAAGGAGACTGCTGAGGAGATTAGACCCTGCTGGTCTAAACCAAGATCAAATGTTCAGGAGTCTAAGGGTTTTGTTACATTCTCATTGACTATGGGCCCTGAATACCACATC TCACAGATTACTGATGCTGTGGTTATCGCAAG ATATTTAGGTGCAACACTTGTGCTTCCAGAAATTAG AGGAAATGAGTTAGGAAAGAGGCGGAAATTCGAAGACATGTATGATGTGGATAAATTCATGACGAGCTTGGATGGAGTTGTCAAAGTAGTACATTCACTTCCTAATGCAGTGTCTTCTAAGAAGCCAGCAGTAGTTAGAGTACCAAACCGGGTGACTGAAGAGTTCATCACGGGAACCATTGAGCCGATCTTCCAAAGAAATAACTACTTACGACTTGCGACTATTTTCTCTTCAGTAAGTTTGAAACAGAAGGAGTCGGGTAACAAGGACTTGGATTCGACTGCCTGCCTTGCAATGTTCAGTGGCCTTCAGTTGAAACCTGAATTTTCAGCAGTAGCCAAGCATATGTTGGACAAGCTTAAAGAAATAAGCGAGAAATCCGATGGGATGGTTATAGCTATTGATTTACAGACCGAATTGCTAGAAAAGAAGATCTGTAAGACGAATGGAGGTGCAAGAAGAAGAGGCTGTTATTACCCTCAGGAAGTTGTGCACTTCCTGAAGAAGGTTGGCTTCTCTGCTGATACAACCATCTACTTGACGGAGACATGGTGGCACAAAAGCCTGGATACTCTGAAGGAGGCATTTCCAAACACTTATACCAAGGATGATATAATGCCGGCCGCTAACAAAGGCGAGTTCCTGAAATCCGGGGATTCATACCTTGCAAGAGCACTGGACCTCAAAATCTGCTCGGAGAGCGACGTGTTCGTCCCTGCCATCCCCGGCCTGTTCTACGGACATGTCGCCGGTAAGAGGATCGCTGCAGGCCTGACAAACATCATAGTTCCTGCTCCAGTGTCCAGCAGTTCAGCTCTGGCTTCAGAGTTCGTCTCCACATACGTGTCCAAGAAGAGCCATCTTGCCTACTCATGTTACTGCTAGTACTGTTCTTATATCATCAGCATCAGCATCAGCATCAATAAGTTCAACTGAAGTGAGTTGCTTGGCCAAGCTTTGGGTACATATGTAAGTCCTTTTGTTGTATACTAGTTCATGATGTTGTGAGGAACAGTATCATTTATGTGTTACTTAATTGTTGTTGATAACAAAAGGAGAGAAGCACAGAATTAGTGTGCTGAAAAAAAAAGGACACTAGATTAGGCATGTGGAAAGAGTGTGTGCTTCATGTACTACCAAGTTATGGTTCATCAGCTGGAAATTACTCCAAAATACTGCTTCCATAGAAGATGTGATGTGTG] [+] EMBL OSC0441 [ TCACTCTCCTCGGCTGCTCTCCTCCTCTGTCGGTGGTGCACTGCTTGCTCGATCCTCTGCAATGGCGGTCGACCCGCGCCAGGTGGTGGCCGGGTTCCTGACCCTGTCCATGTTCGTNATGCTCGGCAACATGATCAAGCACGACCACTTCACCCCCGTCGGCGCCGGCCAGGAGGAGTTGGGCTTGGAGGCAACAGGCATAGAATCAAACGAAATTAAAATTGCAGATACTACTGAAATGACTAAGGTCAACAAGGCTGGAGTGGATCTCCCAAAGGAGACTGCTGAGGAGATTAGGCCCTGCTGGTCTAAACCAAGGTCAAATGTTCAGGAGTCTAAGGGTTTTGTTACATTCTCATTGACTATGGGCCCTGAATACCACATC TCACAGATTACTGATGCTGTGGTTATCGCAAGNAT TTTAGGTGCAA ANTTGTGCTT ] [+] EMBL C74846 [ TCCTCTGTCGGTGGTGCACTGCTTGCTCGATCCTCTGCAATGGCGGTCGACCCGCGCCAGGTGGTGGCCGGGTTCCTGACCCTGTCCATGTTCGTCATGCTCGGCAACATGATCAAGCACGACCACTTCACCCCCGTCGGCGCCGGCCAGGAGGAGTTGGGCTTGGAGGCAACAGGCATAGAATCAAACGAAATTAAAATTGCAGATACTACTGAAATGACTAAGGTCAACAAGGCTGGAGTGGATCTCCCAAAGGAGACTGCTGAGGAGATTAGACCCTGCTGGTCTAAACCAAGATCAAATGTTCAGGAGTCTAAGGGTTTTGTTACATTCTCATTGACTATGGGCCCTGAATACCACATC TCACAGATTACTGATGCTGTGGTTATCGCAAG ATATTTANGTGCAA ACTT ] [+] EMBL AU031134 [ GATCCTCTGCAATGGCGGTCGACCCGCGCCAGGTGGTGGCCGGGTTCCTGACCCTGTCCATGTTCGTCATGCTCGGCAACATGATCAAGCACGACCACTTCACCCCCGTCGGCGCCGGCCAGGAGGAGTTGGGCTTGGAGGCAACAGGCATAGAATCAAACGAAATTAAAATTGCAGATACTACTGAAATGACTAAGGTCAACAAGGCTGGAGTGGATCTCCCAAAGGAGACTGCTGAGGAGATTAGACCCTGCTGGTCTAAACCAAGATCAAATGTTCAGGAGTCTAAGGGTTTTGTTACATTCTCATTGACTATGGGCCCTGAATACCACATCTTCACAGATTACTGATGCTGTGGTTATCGCAAG ATATTTAGGTGCAACACTTGTGCTTCCAGAAATTAGTAGGAAATGAGTTAGGAAAGAGGCGGAAATTCGAAGACA ] [+] EMBL AU088722 [ AGAAGGTTGGCTTCTCTGCTGATACAACCATCTACTTGACGGAGACATGGTGGCACAAAAGCCTGGATACTCTGAAGGAGGCATTTCCAAACACTTATACCAAGGATGATATAATGCCGGCCGCTAACAAAGGCGAGTTCCTGAAATCCGGGGATTCATACCTTGCAAGAGCACTGGACCTCAAAATCTGCTCGGAGAGCGACGTGTTCGTCCCTGCCATCCCCGGCCTGTTCTACGGACATGTCGCCGGTAAGAGGATCGCTGCAGGCCTGACAAACATCATAGTTCCTGCTCCAGTGTCCAGCAGTTCAGCTCTGGCTTCAGAGTTCGTCTCCACATACGTGTCCAAGAAGAGCCATCTTGCCTACTCATGTTACTGCTAGTACTGTTCTTATATCATCAGCATCAGCATCAGCATCAATAAGTTCAACTGAAGTGAGTTGCTTGGCCAAGCTTTGGGTACATATGTAAGTCCTTTTGTTGTATACTAGTTCATGATGTTGTGAGGAACAGTATCATTTATGTGTTACTTAATTGTTGTTGATAACAAAAGGAGAGAAGCACAGAATTAGTGTGCTGAAAAAAAAAGGACACTAGATTAGGCATGTGGAAAGAGTGTGTGCTTCATGTACTACCAAGTTATGGTTCATCAGCTGGAAATTACTCCAAAATACTGCTTCCATAGAAaaaaa ] [+] EMBL CA766640 [ CATTTCC AACACTTATACCAAGGATGATATAATGCCGGCCGCTAACAAAGGCGAGTTCCTGAAATCCGGGGATCCATACCTCGCAAGAGCACTAGACCTCAAAATCTGCTCGGAGAGCGACGTGTTCGTCCCTGCCATCCCCGGCCTGTTCTACGGACATGTCGCCGGTAAGAGGATCGCTGCAGGCCTGACAAACATCATAGTTCCTGCTCCAGTGTCCAGCAGTTCAGCTCTGGCTTCAGAGTTCGTCTCCACATACGTGTCCAAGAAGAGCCATCTTGCCTACTCATGTTACTGCTAGTTCTGTTCTTATATCATCAGCATCAGCATCAGCATCAATAAGTTCAACTGAAGTGAGTTGCTTGGCCAAGCTTTGGGTACATATGTAAGTCCTTTTGTTGTATACTAGTTCATGATGTTGTGAGGAACAGTATCGTTTA TGTTACTTAAATGTTGTTGATAACAAAAGGAGAGAAGCACAGAATTAGTGTGCTG AAAAAAAAGGACACTAGATTAGGCATGTGGAAAGAGTGTGTGCTTCATGTACTACCAAGTTATGGTTCATCAGCTGGAAATTACTCCAAAATACTGCTTCCA ] [+] EMBL CB096443 [ GAAATCCGGGGATTCATACCTTGCAAGAGCACTAGACCTCAAAATCTGCTCGGAGAGCGACGTGTTCGTCCCTGCCATCCCCGGCCTGTTCTACGGACATGTCGCCGGTAAGAGGATCGCTGCAGGCCTGACAAACATCATAGTTCCTGCTCCAGTGTCCAGCAGTTCAGCTCTGGCTTCAGAGTTCGTCTCCACATACGTGTCCAAGAAGAGCCATCTTGCCTACTCATGTTACTGCTGGTACTGTTCTTATATCATCAGCATCAGCATCAGCATCAATAAGTTCAACTGAAGTGAGTTCCTTGGCCAAGCTTTGGGTACATATGTAAGTCCTTTTGTCGTATACTAGTTCATGATGTTGTGAGGAACAGTATCATTTA TGTTACTTAAATGTTGTTGATAACAAAAGGAGAGAAGCACAGAATTAGTGTGCTG AAAAAAAAGGACACTAGATTAGGCATGTGGAAAGAGTGTGTGCTTCATGTACTACCAAGTTATGGTTCATCAGCTGGAAATTACTCCAAAATACTGCTTCCA ] consensusID : consensus_10714#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence [GCGAGTTCCTGAAATTCCGGGGATTCATNCCTTGCAAGAGCACTGGNCCTCAAAATCTGCTCGGAGAGCGACNTGTTCGTCCCTGCCNTCCCCGGCCTGTTCTACGGACATGTCGCCGGTAAGAGGNTCGCTGCAGGCNTGACAAACATCATAGTTCCTGCTCCAGTGTCCAGCAGTTCAGCTCTGGCTTCAGAGTTCGTCTCCACATACGTGTCCAAGAAGAGCCATCTTGCCTACTCATGTTACTGCTAGTACTGTTCTTATATCATCAGCATCAGCATCAGCATCAATAAGTTCAACTGAAGTGAGTTGCTTGGCCAAGCTTTGGGTACATATGTAAGTCCTTTTGTTGTATACTAGTTCATGATGTTGTGAGGAACAGTATCATTTATGTGTTACTTAATTGTTGTTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU031135 [GCGAGTTCCTGAAATTCCGGGGATTCATNCCTTGCAAGAGCACTGGNCCTCAAAATCTGCTCGGAGAGCGACNTGTTCGTCCCTGCCNTCCCCGGCCTGTTCTACGGACATGTCGCCGGTAAGAGGNTCGCTGCAGGCNTGACAAACATCATAGTTCCTGCTCCAGTGTCCAGCAGTTCAGCTCTGGCTTCAGAGTTCGTCTCCACATACGTGTCCAAGAAGAGCCATCTTGCCTACTCATGTTACTGCTAGTACTGTTCTTATATCATCAGCATCAGCATCAGCATCAATAAGTTCAACTGAAGTGAGTTGCTTGGCCAAGCTTTGGGTACATATGTAAGTCCTTTTGTTGTATACTAGTTCATGATGTTGTGAGGAACAGTATCATTTATGTGTTACTTAATTGTTGTTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10714#0 CGTGCTTGTCCTCTGGGTCTCTGTCCCCCTCATCTCTCTCCTCCTCACTCTCCTCGGCTG 60 consensus_10714#1 ------------------------------------------------------------ consensus_10714#0 CTCTCCTCCTCTGTCGGTGGTGCACTGCTTGCTCGATCCTCTGCAATGGCGGTCGACCCG 120 consensus_10714#1 ------------------------------------------------------------ consensus_10714#0 CGCCAGGTGGTGGCCGGGTTCCTGACCCTGTCCATGTTCGTCATGCTCGGCAACATGATC 180 consensus_10714#1 ------------------------------------------------------------ consensus_10714#0 AAGCACGACCACTTCACCCCCGTCGGCGCCGGCCAGGAGGAGTTGGGCTTGGAGGCAACA 240 consensus_10714#1 ------------------------------------------------------------ consensus_10714#0 GGCATAGAATCAAACGAAATTAAAATTGCAGATACTACTGAAATGACTAAGGTCAACAAG 300 consensus_10714#1 ------------------------------------------------------------ consensus_10714#0 GCTGGAGTGGATCTCCCAAAGGAGACTGCTGAGGAGATTAGACCCTGCTGGTCTAAACCA 360 consensus_10714#1 ------------------------------------------------------------ consensus_10714#0 AGATCAAATGTTCAGGAGTCTAAGGGTTTTGTTACATTCTCATTGACTATGGGCCCTGAA 420 consensus_10714#1 ------------------------------------------------------------ consensus_10714#0 TACCACATCTCACAGATTACTGATGCTGTGGTTATCGCAAGATATTTAGGTGCAACACTT 480 consensus_10714#1 ------------------------------------------------------------ consensus_10714#0 GTGCTTCCAGAAATTAGAGGAAATGAGTTAGGAAAGAGGCGGAAATTCGAAGACATGTAT 540 consensus_10714#1 ------------------------------------------------------------ consensus_10714#0 GATGTGGATAAATTCATGACGAGCTTGGATGGAGTTGTCAAAGTAGTACATTCACTTCCT 600 consensus_10714#1 ------------------------------------------------------------ consensus_10714#0 AATGCAGTGTCTTCTAAGAAGCCAGCAGTAGTTAGAGTACCAAACCGGGTGACTGAAGAG 660 consensus_10714#1 ------------------------------------------------------------ consensus_10714#0 TTCATCACGGGAACCATTGAGCCGATCTTCCAAAGAAATAACTACTTACGACTTGCGACT 720 consensus_10714#1 ------------------------------------------------------------ consensus_10714#0 ATTTTCTCTTCAGTAAGTTTGAAACAGAAGGAGTCGGGTAACAAGGACTTGGATTCGACT 780 consensus_10714#1 ------------------------------------------------------------ consensus_10714#0 GCCTGCCTTGCAATGTTCAGTGGCCTTCAGTTGAAACCTGAATTTTCAGCAGTAGCCAAG 840 consensus_10714#1 ------------------------------------------------------------ consensus_10714#0 CATATGTTGGACAAGCTTAAAGAAATAAGCGAGAAATCCGATGGGATGGTTATAGCTATT 900 consensus_10714#1 ------------------------------------------------------------ consensus_10714#0 GATTTACAGACCGAATTGCTAGAAAAGAAGATCTGTAAGACGAATGGAGGTGCAAGAAGA 960 consensus_10714#1 ------------------------------------------------------------ consensus_10714#0 AGAGGCTGTTATTACCCTCAGGAAGTTGTGCACTTCCTGAAGAAGGTTGGCTTCTCTGCT 1020 consensus_10714#1 ------------------------------------------------------------ consensus_10714#0 GATACAACCATCTACTTGACGGAGACATGGTGGCACAAAAGCCTGGATACTCTGAAGGAG 1080 consensus_10714#1 ------------------------------------------------------------ consensus_10714#0 GCATTTCCAAACACTTATACCAAGGATGATATAATGCCGGCCGCTAACAAAGGCGAGTTC 1140 consensus_10714#1 ----------------------------------------------------GCGAGTTC 8 ******** consensus_10714#0 CTGAAAT-CCGGGGATTCATACCTTGCAAGAGCACTGGACCTCAAAATCTGCTCGGAGAG 1199 consensus_10714#1 CTGAAATTCCGGGGATTCATNCCTTGCAAGAGCACTGGNCCTCAAAATCTGCTCGGAGAG 68 ******* ************ ***************** ********************* consensus_10714#0 CGACGTGTTCGTCCCTGCCATCCCCGGCCTGTTCTACGGACATGTCGCCGGTAAGAGGAT 1259 consensus_10714#1 CGACNTGTTCGTCCCTGCCNTCCCCGGCCTGTTCTACGGACATGTCGCCGGTAAGAGGNT 128 **** ************** ************************************** * consensus_10714#0 CGCTGCAGGCCTGACAAACATCATAGTTCCTGCTCCAGTGTCCAGCAGTTCAGCTCTGGC 1319 consensus_10714#1 CGCTGCAGGCNTGACAAACATCATAGTTCCTGCTCCAGTGTCCAGCAGTTCAGCTCTGGC 188 ********** ************************************************* consensus_10714#0 TTCAGAGTTCGTCTCCACATACGTGTCCAAGAAGAGCCATCTTGCCTACTCATGTTACTG 1379 consensus_10714#1 TTCAGAGTTCGTCTCCACATACGTGTCCAAGAAGAGCCATCTTGCCTACTCATGTTACTG 248 ************************************************************ consensus_10714#0 CTAGTACTGTTCTTATATCATCAGCATCAGCATCAGCATCAATAAGTTCAACTGAAGTGA 1439 consensus_10714#1 CTAGTACTGTTCTTATATCATCAGCATCAGCATCAGCATCAATAAGTTCAACTGAAGTGA 308 ************************************************************ consensus_10714#0 GTTGCTTGGCCAAGCTTTGGGTACATATGTAAGTCCTTTTGTTGTATACTAGTTCATGAT 1499 consensus_10714#1 GTTGCTTGGCCAAGCTTTGGGTACATATGTAAGTCCTTTTGTTGTATACTAGTTCATGAT 368 ************************************************************ consensus_10714#0 GTTGTGAGGAACAGTATCATTTATGTGTTACTTAATTGTTGTTGATAACAAAAGGAGAGA 1559 consensus_10714#1 GTTGTGAGGAACAGTATCATTTATGTGTTACTTAATTGTTGTTGATAAAAAAAAAAAAAA 428 ************************************************ **** * * * consensus_10714#0 AGCACAGAATTAGTGTGCTGAAAAAAAAAGGACACTAGATTAGGCATGTGGAAAGAGTGT 1619 consensus_10714#1 AAAAAAAAA-----------AAAAAAAA-------------------------------- 445 * * * ** ******** consensus_10714#0 GTGCTTCATGTACTACCAAGTTATGGTTCATCAGCTGGAAATTACTCCAAAATACTGCTT 1679 consensus_10714#1 ------------------------------------------------------------ consensus_10714#0 CCATAGAAGATGTGATGTGTG 1700 consensus_10714#1 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||