These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10717#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 366 fasta sequence [TTTTTTCACAAATTCACAGATCAAATAAACATCACAGATCTTTTTGACAACACAAATTCACAGATCATTGATATCACAAATTCACATACTTCACAAAATTAATCATCCACAGCAGCACCACACATCTACAACGACATCACAAAAACAAGTCCTCACATCGTCGTCTTCAGCGCTGCATCAGCCCGCTCGTCAGTGCCGCGACAACCCCTCCGGGCCGCCGCCTGCCACCGTCCTCCCCTCCACCCGCCCGACCGCCGCCTGCCACCTCCTGCCACCAATAGGTAAGGGGAGGGGATTGAGAGGAGGAGAGGGGATCGGGAAAGGAGTGAAGAGGATGAGTGGAGGAAGAGAGGACGAAGGGATAAG] [-] EMBL CF298927 [TTTTTTCACAAATTCACAGATCAAATAAACATCACAGATCAAAATGACAACACAAATTCACAGATCATTGATATCACAAATTCACATACTTCACAAAATTAATCATCCACAGCAGCACCACACATCTACAACGACATCACAAAAACAAGTCCTCACATCGTCGTCTTCAGCGCTGCATCAGCCCGCTCGTCAGTGCCGCGACAACCCCTCCGGGCCGCCGCCTGCCACCGTCCTCCCCTCCACCCGCCCGACCGCCGCCTGCCACCTCCTGCCACCAATAGGTAAGGGGAGGGGATTGAGAGGAGGAGAGGGGATCGGGAAAGGA ] [+] EMBL CF298928 [ AAACATCACAGATCAAAATGACAACACAAATTCACAGATCATTGATATCACAAATTCACATACTTTACAAAATTAATCATCCACAGCAGCACCACACATCTACAACGACTTC CATAAACAAGTCCTCACATCGTCGTCTTCAGCGCTGCATCAGCCCGCTCGTCAGTGCCGCGACAACCCCTCCGGGCCGCCGCCTGCCACCGTCCTCCCCTCCACCCGCCCGACCGCCGCCTGCCACCTCCTGCCACCAATAGGTAAGGGGAGGGGATTGAGAGGAGGAGAGGGGATCGGGAAAGG ] [+] EMBL CF291537 [ tttttTTTTTGACAACACAAATTCACAGATCATTGATATCACAAATTCACATACTTCACAAAATTAATCATCCACAGCAGCACCACACATCTACAACGACATCACAAAAACAAGTCCTCACATCGTCGTCTTCAGCGCTGCATCAGCCCGCTCGTCAGTGCCGCGACAACCCCTCCGGGCCGCCGCCTGCCACCGTCCTCCCCTCCACCCGCCCGACCGCCGCCTGCCACCTCCTGCCACCAATAGGTAAGGGGAGGGGATTGAGAGGAGGAGAGGGGATGGGGAAAGGAGTGAAGAGGATGAGTGGAGGAAGAGAGGACGAAGGGATAA ] [-] EMBL CF291536 [ ttttTTTTTGACAACACAAATTCACAGATCATTGATATCACAAATTCACATACTTCACAAAATTAATCATCCACAGCAGCACCACACATCTACAACGACATCACAAAAACAAGTCCTCACATCGTCGTCTTCAGCGCTGCATCAGCCCGCTCGTCAGTGCCGCGACAACCCCTCCGGGCCGCCGCCTGCCACCGTCCTCCCCTCCACCCGCCCGACCGCCGCCTGCCACCTCCTGCCACCAATAGGTAAGGGGAGGGGATTGAGAGGAGGAGAGGGGATGGGGAAAGGAGTGAAGAGGATGAGTGGAGGAAGAGAGGACGAAGGGATAAG] [-] EMBL AU057950 [ TTTTTGACAACACAAATTCACAGATCATTGATATCACAAATTCACATACTTCACAAAATTAATCATCCACAGCAGCACCACACATCTACAACGACATCACAAAAACAAGTCCTCACATCGTCGTCTTCAGCGCTGCATCAGCCCGCTCGTCAGTGCCGCGACAACCCCTCCGGGCCGCCGCCTGCCACCGTCCTCCCCTCCACCCGCCCGACCGCCGCCTGCCACCTCCTGCCACCAATAGGTAAGGGGAGGGGATTGAGAGGAGGAGAGGGGATCGGGAAAGGAGTGAAGAGGATGAG ] [-] EMBL AK058962 [ ATTCACATACTTCACAAAATTAATCATCCACAGCAGCACCACACATCTACAACGACATCACAAAAACAAGTCCTCACATCGTCGTCTTCAGCGCTGCATCAGCCCGCTCGTCAGTGCCGCGACAACCCCTCCGGGCCGCCGCCTGCCACCGTCCTCCCCTCCACCCGCCCGACCGCCGCCTGCCACCTCCTGCCACCAATAGGTAAGGGGAG ] consensusID : consensus_10717#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 275 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACAACACAAATTCACAGATCATTGGTATCACAAATTCACATACTTCACAAAATTAATCATCCACAGGAGCACCACACATTTACAACGACATTACAAAAACAAGTCCTCACATTGGCGTCTTCAGCGCTGCATTAACCCGCTCGTCGGGGCCGGGACAACCCCTCCGGGCCGGCGGCTGGCACCGTTCTTCCCTTCACCCGCCCGAACGGCGGCTGGCACCTTCTGGCACCAATAGGTAAGGGGA] [+] EMBL CF298827 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACAACACAAATTCACAGATCATTGGTATCACAAATTCACATACTTCACAAAATTAATCATCCACAGGAGCACCACACATTTACAACGACATTACAAAAACAAGTCCTCACATTGGCGTCTTCAGCGCTGCATTAACCCGCTCGTCGGGGCCGGGACAACCCCTCCGGGCCGGCGGCTGGCACCGTTCTTCCCTTCACCCGCCCGAACGGCGGCTGGCACCTTCTGGCACCAATAGGTAAGGGGA] [+] EMBL CF301311 [ TTTTTTTTTTTTTTGACAACACAAATTCACAGATCATTGATATCACAAATTCACATA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10717#0 TTTTTTCACAAATTCACAGATCAAATAAACATCACAGATCTTTTTGACAACACAAATTCA 60 consensus_10717#1 ---------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACAACACAAATTCA 45 * * * * ******************** consensus_10717#0 CAGATCATTGATATCACAAATTCACATACTTCACAAAATTAATCATCCACAGCAGCACCA 120 consensus_10717#1 CAGATCATTGGTATCACAAATTCACATACTTCACAAAATTAATCATCCACAGGAGCACCA 105 ********** ***************************************** ******* consensus_10717#0 CACATCTACAACGACATCACAAAAACAAGTCCTCACATCGTCGTCTTCAGCGCTGCATCA 180 consensus_10717#1 CACATTTACAACGACATTACAAAAACAAGTCCTCACATTGGCGTCTTCAGCGCTGCATTA 165 ***** *********** ******************** * ***************** * consensus_10717#0 GCCCGCTCGTCAGTGCCGCGACAACCCCTCCGGGCCGCCGCCTGCCACCGTCCTCCCCTC 240 consensus_10717#1 ACCCGCTCGTCGGGGCCGGGACAACCCCTCCGGGCCGGCGGCTGGCACCGTTCTTCCCTT 225 ********** * **** ****************** ** *** ****** ** **** consensus_10717#0 CACCCGCCCGACCGCCGCCTGCCACCTCCTGCCACCAATAGGTAAGGGGAGGGGATTGAG 300 consensus_10717#1 CACCCGCCCGAACGGCGGCTGGCACCTTCTGGCACCAATAGGTAAGGGGA---------- 275 *********** ** ** *** ***** *** ****************** consensus_10717#0 AGGAGGAGAGGGGATCGGGAAAGGAGTGAAGAGGATGAGTGGAGGAAGAGAGGACGAAGG 360 consensus_10717#1 ------------------------------------------------------------ consensus_10717#0 GATAAG 366 consensus_10717#1 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||